mRNA_3109 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161277
Unique NamemRNA_3109
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A835ZE06_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE06_9STRA)

HSP 1 Score: 302 bits (773), Expect = 3.730e-104
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 
Query:    1 MPPFPDPDAPDTFPCTGCGVGYEASGYYYANGNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            MPPFPDPDAPDTFPCTGCGVGYEASGYYYANGNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA
Sbjct:    1 MPPFPDPDAPDTFPCTGCGVGYEASGYYYANGNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA 141
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A812PKQ9_9DINO (Y01B protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PKQ9_9DINO)

HSP 1 Score: 82.0 bits (201), Expect = 1.350e-15
Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = 1 
Query:   10 FPDPDAPDTFPCTGCGVGYEASGYYYAN----GNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASG-HTLTFGDIEAMAREQQDRCYLSGHPMTFA-ARSDWQASVERLDNSLDYSRENCRLICLEFNT 420
            F  PD  D F CT CG  ++A   +Y         Q+ C+ C+     AY  T  G  H M    + ++R+R+  G  SG  +L   D+  M  +Q+ RCY SG P+  A   +DW  S+ERLDNS  Y+R+NC LI  EFNT
Sbjct:  223 FRGPDEHDNFLCTRCGS-WKARDRFYPRLKGAVGLQSMCKECESQWHLAYRGTLRGHAHSM----LCSARQRALRGVWSGTFSLDLSDLLNMLSDQEGRCYYSGVPLHCARGPADWVWSLERLDNSATYTRDNCVLIAQEFNT 360
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.560e-15
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 1 
Query:   31 DTFPCTGCGVGYEASGYYYANGNR---QARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFN 417
            D+  C+ C +    + ++  N N+   Q+ C+ C         +TR GF + +  NT + S  R      S + LT    + + R Q DRC  SG P+TF   SDWQAS+ERL++  DY  EN  L  LEFN
Sbjct:  450 DSKRCSKCQIIKALTSFHKDNQNKDGLQSYCKECNRQKYIVRINTRKGFVYNLVANTQQRSNRRGM----SQNKLTAAVFDDICRTQNDRCVYSGLPVTFTPMSDWQASIERLNDDEDYLVENSALCALEFN 577
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A812HH86_9DINO (PmpB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812HH86_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 6.080e-15
Identity = 53/142 (37.32%), Postives = 73/142 (51.41%), Query Frame = 1 
Query:   10 FPDPDAPDTFPCTGCGVGYEASGYYY---ANGNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGH-TLTFGDIEAMAREQQDRCYLSGHPMTFAAR-SDWQASVERLDNSLDYSRENCRLICLEFNT 420
            F  PDA   F C  CGV   A  +Y    +    ++RC+ C       Y  T  G  H +  + +  +R RSA G+++G  TL   D+  M   Q  RCY SG P+  A   +DW  S+ERLDN++ Y++ENC LI  EF T
Sbjct:  330 FRGPDAESKFRCNCCGVWQLAENFYSDAASTTGLRSRCKKCCCGTNSVYRQTMRG--HAL--SLLAGARYRSAKGKSNGRFTLELDDLLDMLLLQGGRCYYSGVPLHCATGPADWVWSIERLDNAVTYTKENCVLIAQEFQT 467
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A836CFZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.080e-15
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  100 RQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            R + CR C     +    +R GF  R+  N+  +S+ R      + H LT  ++ A+   Q DRC  SG P+ F+  SDWQAS+ERLD+++DY   NC L  LEFN A
Sbjct:  542 RSSACRECHARMRRL--KSRNGFISRLVANSKSSSKHRGM----NQHELTAAELGAICSAQGDRCIYSGLPVNFSMMSDWQASLERLDDNIDYRVANCALCALEFNVA 643
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A812KQT9_SYMMI (PmpB protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812KQT9_SYMMI)

HSP 1 Score: 79.3 bits (194), Expect = 1.630e-14
Identity = 52/140 (37.14%), Postives = 72/140 (51.43%), Query Frame = 1 
Query:   19 PDAPDTFPCTGCGVGYEASGYYYANGNR---QARCRSCQLVNLQAYYSTRVGFEHRMWNNTM-KASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAAR-SDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            PD   ++PCT CG+    S ++  N  +   + +C+ C      A+  T  G    + +N   +AS  R+  G   G  L   D+  M   Q  RCY SG P+  AA  +DW  S+ERLDNS+ Y+RENC LI  EF TA
Sbjct:  494 PDTESSWPCTCCGIWKHVSQFHKNNTCKAGFKRQCKQCTSEKKSAWRQTMRGHGLTLLSNARYRASTVRTWSG---GSMLDLDDVLDMLWLQGGRCYYSGVPLHCAAGPADWVWSIERLDNSVTYTRENCVLIAQEFQTA 630
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.670e-14
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   52 CGVGYEASGYYYANGNR-QARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            C V    + +Y    NR  + C+ C  +N +   +TR GF     +  +  SR RS     + + LT    + + R Q DRC  SG P+ FA  SDWQAS+ERL+N  DY+  N  L  LEFN A
Sbjct:  457 CQVRKPLTSFYKNKLNRLHSFCKECVALNNRVRINTRPGFI----SGLVAGSRLRSKRRGMNQNELTTAIFDGICRNQNDRCIYSGLPVNFAPMSDWQASIERLNNDEDYTISNSALCVLEFNVA 577
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A1Q9E2Z5_SYMMI (Putative outer membrane protein PmpB n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E2Z5_SYMMI)

HSP 1 Score: 79.3 bits (194), Expect = 1.820e-14
Identity = 52/140 (37.14%), Postives = 72/140 (51.43%), Query Frame = 1 
Query:   19 PDAPDTFPCTGCGVGYEASGYYYANGNR---QARCRSCQLVNLQAYYSTRVGFEHRMWNNTM-KASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAAR-SDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            PD   ++PCT CG+    S ++  N  +   + +C+ C      A+  T  G    + +N   +AS  R+  G   G  L   D+  M   Q  RCY SG P+  AA  +DW  S+ERLDNS+ Y+RENC LI  EF TA
Sbjct: 3058 PDTESSWPCTCCGIWKHVSQFHKNNTCKAGFKRQCKQCTSEKKSAWRQTMRGHGLTLLSNARYRASTVRTWSG---GSMLDLDDVLDMLWLQGGRCYYSGVPLHCAAGPADWVWSIERLDNSVTYTRENCVLIAQEFQTA 3194
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A813H9K2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H9K2_POLGL)

HSP 1 Score: 78.2 bits (191), Expect = 3.880e-14
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:   37 FPCTGCGVGYEASGYYYANGNR----QARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAAR-SDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            F C+ CG  Y+    +  + +R    Q  CR C    +  + ST  G      +  + ++R RS + R    TL   D+  M R Q+ RCY SG PM +  R +DW+ S+ERLDN + Y+R+NC LI +EFNT+
Sbjct:  322 FHCSTCGT-YKPEADFNKSHSRPHGIQIYCRGCSKARMVQHRSTLRG----NISGLLDSARGRS-IRREQAFTLQQEDMFEMLRSQRGRCYYSGVPMQYRQRHTDWRMSLERLDNLIGYTRQNCVLIAVEFNTS 449
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BLAST of jgi.p|Trimin1|161277 vs. uniprot
Match: A0A813D8X4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D8X4_POLGL)

HSP 1 Score: 78.2 bits (191), Expect = 3.880e-14
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:   43 CTGCGVGYEASGYYYANGNR----QARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAAR-SDWQASVERLDNSLDYSRENCRLICLEFNTA 423
            C+ C + Y++   +  +  R    Q  CR+C    +  + ST  GF   +    ++++R RS + RA    L   D+  M   Q+ RCY SG P+ +  R +DWQ S+ERLDN   Y+R+NC LI LEFNT+
Sbjct:  325 CSNCQI-YKSDAEFNKHNKRPSGVQPYCRACSSAIVSEHRSTLRGFIRSL----LESARRRS-IQRAQEFALQPADLLEMMWSQRGRCYYSGVPLQYKLRHTDWQMSLERLDNLNGYTRQNCVLIALEFNTS 450
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161277 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE06_9STRA3.730e-104100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A812PKQ9_9DINO1.350e-1538.46Y01B protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A835Z7X8_9STRA3.560e-1535.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812HH86_9DINO6.080e-1537.32PmpB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A836CFZ5_9STRA9.080e-1539.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812KQT9_SYMMI1.630e-1437.14PmpB protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A835YK65_9STRA1.670e-1437.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Q9E2Z5_SYMMI1.820e-1437.14Putative outer membrane protein PmpB n=1 Tax=Symbi... [more]
A0A813H9K2_POLGL3.880e-1436.57Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813D8X4_POLGL3.880e-1436.36Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1440839..1441261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161277|e_gw1.16.95.1
Max annot lvl1236|Gammaproteobacteria
EggNOG OGs2DTVY@1|root,33MW8@2|Bacteria,1P6ST@1224|Proteobacteria,1SU01@1236|Gammaproteobacteria
Evalue3.34e-06
Seed ortholog743721.Psesu_1123
Hectar predicted targeting categoryother localisation
TranscriptId161599
TrackFilteredModels1
ProteinId161277
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161277gene_3109Tribonema minus UTEX_B_3156 geneContig_16 1440839..1441261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3109_1exon_3109_1Tribonema minus UTEX_B_3156 exonContig_16 1440839..1441261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3109CDS_3109Tribonema minus UTEX_B_3156 CDSContig_16 1440839..1441261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161277Trimin1|161277|e_gw1.16.95.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1440839..1441261 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Trimin1|161277|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_16:1440839..1441261+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTTCCCGGACCCGGACGCTCCCGACACGTTCCCCTGCACCGG
GTGCGGGGTCGGGTACGAGGCGAGCGGCTACTACTACGCCAACGGCAACC
GTCAGGCGAGATGCAGATCGTGTCAGCTCGTCAACCTGCAGGCGTACTAC
AGCACGAGAGTCGGCTTCGAGCACCGCATGTGGAATAACACAATGAAAGC
CTCCCGAGAACGCTCCGCTCTCGGACGGGCGAGCGGCCACACGCTGACGT
TCGGAGACATCGAGGCCATGGCACGGGAGCAGCAGGACAGGTGCTACCTG
TCGGGTCACCCTATGACGTTCGCCGCCAGGAGCGACTGGCAGGCGAGCGT
CGAGAGGCTCGACAACTCCCTGGACTACTCGCGGGAGAACTGCAGGCTCA
TCTGCCTCGAGTTCAACACGGCG
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protein sequence of jgi.p|Trimin1|161277

>Trimin1|161277|e_gw1.16.95.1 ID=Trimin1|161277|e_gw1.16.95.1|Name=jgi.p|Trimin1|161277|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MPPFPDPDAPDTFPCTGCGVGYEASGYYYANGNRQARCRSCQLVNLQAYY
STRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYL
SGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA
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mRNA from alignment at Contig_16:1440839..1441261+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Trimin1|161277|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_16:1440839..1441261+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGTTCCCGGACCCGGACGCTCCCGACACGTTCCCCTGCACCGG
GTGCGGGGTCGGGTACGAGGCGAGCGGCTACTACTACGCCAACGGCAACC
GTCAGGCGAGATGCAGATCGTGTCAGCTCGTCAACCTGCAGGCGTACTAC
AGCACGAGAGTCGGCTTCGAGCACCGCATGTGGAATAACACAATGAAAGC
CTCCCGAGAACGCTCCGCTCTCGGACGGGCGAGCGGCCACACGCTGACGT
TCGGAGACATCGAGGCCATGGCACGGGAGCAGCAGGACAGGTGCTACCTG
TCGGGTCACCCTATGACGTTCGCCGCCAGGAGCGACTGGCAGGCGAGCGT
CGAGAGGCTCGACAACTCCCTGGACTACTCGCGGGAGAACTGCAGGCTCA
TCTGCCTCGAGTTCAACACGGCG
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Coding sequence (CDS) from alignment at Contig_16:1440839..1441261+

>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Trimin1|161277|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_16:1440839..1441261+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCGTTCCCGGACCCGGACGCTCCCGACACGTTCCCCTGCACCGG
GTGCGGGGTCGGGTACGAGGCGAGCGGCTACTACTACGCCAACGGCAACC
GTCAGGCGAGATGCAGATCGTGTCAGCTCGTCAACCTGCAGGCGTACTAC
AGCACGAGAGTCGGCTTCGAGCACCGCATGTGGAATAACACAATGAAAGC
CTCCCGAGAACGCTCCGCTCTCGGACGGGCGAGCGGCCACACGCTGACGT
TCGGAGACATCGAGGCCATGGCACGGGAGCAGCAGGACAGGTGCTACCTG
TCGGGTCACCCTATGACGTTCGCCGCCAGGAGCGACTGGCAGGCGAGCGT
CGAGAGGCTCGACAACTCCCTGGACTACTCGCGGGAGAACTGCAGGCTCA
TCTGCCTCGAGTTCAACACGGCG
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