mRNA_3100 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A836CJ84_9STRA (Leucine carboxyl methyltransferase-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ84_9STRA) HSP 1 Score: 451 bits (1160), Expect = 4.010e-160 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 Query: 1 MPPDPLRTLLAGETEVTALRRDLYAVRAERGAAAARNALEAVAVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVPGLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVLQAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFGGLDASAPPVYVPGGW 699 MPPDPLRTLLAGETEVTALRRDLYAVRAERGAAAARNALEAVAVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVPGLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVLQAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFGGLDASAPPVYVPGGW Sbjct: 1 MPPDPLRTLLAGETEVTALRRDLYAVRAERGAAAARNALEAVAVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVPGLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVLQAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFGGLDASAPPVYVPGGW 233
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A7K2T7H6_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Streptomyces sp. SID8352 TaxID=2690338 RepID=A0A7K2T7H6_9ACTN) HSP 1 Score: 62.8 bits (151), Expect = 4.370e-8 Identity = 66/199 (33.17%), Postives = 89/199 (44.72%), Query Frame = 1 Query: 124 VAVRRVWSTGRLAAALR-CGPGQVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPT-PVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVLQ-------------------AAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFG 654 +A+R + +A LR G Q+V GMDTR RL P G +YEV+ AA + K L R G+ + V ADL +W ALA+AGFDASRP VW+ E +L L +A +L+ A R P + + T RFG PE L+ G+ T E + G+P A G Sbjct: 56 IAIRTRYFDDAVADVLRETGADQIVLVAAGMDTRAFRLDWPAGATVYEVDHAALIDEKRERLRR--LGAEARADRREVRADLAG--DWLPALAAAGFDASRPTVWITEGLLFFLTEDQAAGLLRTLGSVSAPGSRLVVDFVSRALLRSPFSQSFLRGLREDGTPW--RFGTDEPERFLAGTGWKTHEVREPGEPGAGEG 248
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A4R1HH28_9PSEU (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Pseudonocardia endophytica TaxID=401976 RepID=A0A4R1HH28_9PSEU) HSP 1 Score: 62.8 bits (151), Expect = 5.020e-8 Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1 Query: 157 LAAALRCGPGQVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVL 447 L +A+ G QVV G+DTR RL P G+ +YEV+ A L K+ +L+ A +S T VA ++ +W AAL +AGFD SRP VW+ E +L Sbjct: 84 LGSAVEAGTSQVVLLAAGLDTRGCRLGWPSGVTVYEVDQPAVLEFKDRVLADA---GATSEATRVAVPVDLRHDWPAALTAAGFDPSRPTVWLAEGLL 178
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: UPI0011775E9E (SAM-dependent methyltransferase n=1 Tax=Crossiella equi TaxID=130796 RepID=UPI0011775E9E) HSP 1 Score: 61.6 bits (148), Expect = 5.670e-8 Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 124 VAVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVPG-LAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVA-ADLERPPEWQAALASAGFDASRPAVWVVEDVL 447 +A R V+ L AAL G QVV G G+DTR R+ +PG +YEV+T A K +L G+ +V V ADL +W AAL +AGFD +RP +WV+E +L Sbjct: 81 LAARTVYYDRALLAALSQGTRQVVLPGAGLDTRAYRMALPGDTTLYEVDTPAVHDFKTTVLD----GTEPAVRRVVVEADLRA--DWAAALTAAGFDRTRPTIWVLEGLL 184
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: UPI001AEA8863 (SAM-dependent methyltransferase n=1 Tax=Crossiella equi TaxID=130796 RepID=UPI001AEA8863) HSP 1 Score: 61.6 bits (148), Expect = 1.280e-7 Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 124 VAVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVPG-LAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVA-ADLERPPEWQAALASAGFDASRPAVWVVEDVL 447 +A R V+ L AAL G QVV G G+DTR R+ +PG +YEV+T A K +L G+ +V V ADL +W AAL +AGFD +RP +WV+E +L Sbjct: 81 LAARTVYYDRALLAALSQGTRQVVLPGAGLDTRAYRMALPGDTTLYEVDTPAVHDFKTTVLD----GTEPAVRRVVVEADLRA--DWAAALTAAGFDRTRPTIWVLEGLL 184
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A2N8P0N4_STREU (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Streptomyces eurocidicus TaxID=66423 RepID=A0A2N8P0N4_STREU) HSP 1 Score: 59.3 bits (142), Expect = 7.000e-7 Identity = 58/176 (32.95%), Postives = 77/176 (43.75%), Query Frame = 1 Query: 187 QVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRL-------------------AWGEAQAVLQAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFG 654 QVV GMDTR RL P G +YE++ AA + K A L+R + ++ V ADL +W AL AGFD SRP +WV E ++ L +W V +A R P T + T L FG PE LSA G+ + + G+P A G Sbjct: 77 QVVLVAAGMDTRAFRLPWPAGTTVYELDHAALVDEKRARLARLD-ATATTDRREVRADLAE--DWLPALTRAGFDPSRPTLWVAEGLMFFLTREQSAGLLRALGAASAPGSWLAVDFVSKALLRSPFSQTFLKGLKEDGTPWL--FGTDEPEEFLSAAGWKVRDLKEPGEPGAGEG 247
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A8I1SVR8_THIA3 (S-adenosyl-L-methionine-dependent methyltransferase n=3 Tax=Thiomonas TaxID=32012 RepID=A0A8I1SVR8_THIA3) HSP 1 Score: 58.9 bits (141), Expect = 9.530e-7 Identity = 53/141 (37.59%), Postives = 72/141 (51.06%), Query Frame = 1 Query: 118 EAVAVRRVWSTGRLAAALRCGPG--QVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVLQAA-ARGPLGTTVIAD 528 E V +R + AAALR P Q+V GMDTR RL P G +YEV+ L K A L + G ++ VAADL R +W+ L AGFD S+PA+W+ E +L L +A VL A +G+ ++ D Sbjct: 54 EFVVIRTRFFDDACAAALREEPAIRQIVMVAAGMDTRAYRLDWPQGTKVYEVDHGELLAEKTARLHQIG-GPSRALRLNVAADLAR--DWRGPLIGAGFDPSKPALWLAEGLLFFLTDEQAGEVLSTCRAMSAMGSRLVVD 191
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: A0A1Z2KVI2_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Streptomyces albireticuli TaxID=1940 RepID=A0A1Z2KVI2_9ACTN) HSP 1 Score: 58.5 bits (140), Expect = 1.300e-6 Identity = 62/198 (31.31%), Postives = 85/198 (42.93%), Query Frame = 1 Query: 124 VAVRRVWSTGRLAAALRCGP-GQVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRL-------------------AWGEAQAVLQAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFG 654 +A+R + +A LR QVV GMDTR RL P G +YE++ A + K A L+R + ++ V ADL EW AL AGFD SRP +WV E ++ L +W V +A R P T + T L FG PE L+A G+ + + G+P A G Sbjct: 55 IAIRTKYFDDSIATVLRENTIEQVVLVAAGMDTRAFRLTWPAGTTVYEMDHHALIDEKRARLARLD-ATATADRREVKADLAE--EWLPALTRAGFDPSRPTLWVTEGLMFFLTRDQAAQLLRSLGAASAPGSWLAVDFVSKALLRSPFSQTFLKGLKEDGTPWL--FGTDEPEEFLAATGWKARDVREPGEPGAGEG 247
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: UPI001675BAD5 (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Streptomyces lucensis TaxID=67319 RepID=UPI001675BAD5) HSP 1 Score: 57.8 bits (138), Expect = 2.570e-6 Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 127 AVRRVWSTGRLAAALRCGPGQVVFFGCGMDTRPRRLLVP-GLAIYEVETAAALGAKEALLSRAPYGSFSSVPTPVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVL 483 AVR + + AA+R G QVV G+D R RL +P G +EV+ K+ALL R+ S VAADL +W++AL +AGFD SRP VW+VE +L L AVL Sbjct: 73 AVRTRFFDDEVLAAVRRGIRQVVTLAAGLDGRGVRLELPSGTRWFEVDLPEMTEFKDALLERSGL-PLSCERRAVAADLRE--DWRSALRAAGFDPSRPTVWLVEGLLMYLTDEAGDAVL 189
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Match: UPI00146C35E3 (SAM-dependent methyltransferase n=1 Tax=Streptomyces sp. HNM0574 TaxID=2714954 RepID=UPI00146C35E3) HSP 1 Score: 54.7 bits (130), Expect = 2.740e-5 Identity = 58/180 (32.22%), Postives = 74/180 (41.11%), Query Frame = 1 Query: 178 GPGQVVFFGCGMDTRPRRL-LVPGLAIYEVETAAALGAKEALLSRAPYGSFSSVPT-PVAADLERPPEWQAALASAGFDASRPAVWVVEDVLCRLAWGEAQAVL-------------------QAAARGPLGTTVIADCPTPATAELGRFGVRCPETCLSALGFATCEASQLGDPSANFG 654 G QVV GMDTR RL PG+ +YEV+ A + K A L R G+ + V ADL EW L AGFD SRP +WV E + L +A +L +A R P + T RFG PE L+ G+ E + G+P A G Sbjct: 75 GVRQVVLVAAGMDTRAFRLGWPPGVTVYEVDHEALVREKRARLER--LGATARTERREVGADLAG--EWLPRLEEAGFDRSRPVLWVAEGLFFFLTREQATGLLRLLRSASAPGSALATDFASEALLRSPFSRRFLEHLRADGTPW--RFGTDEPEEFLAGSGWKAVEVKEPGEPGAGRG 248 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3100 ID=mRNA_3100|Name=jgi.p|Trimin1|161148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_16:1427699..1428397- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGCCCGACCCCCTGCGGACGCTGCTGGCGGGGGAGACCGAGGTCACback to top protein sequence of jgi.p|Trimin1|161148 >Trimin1|161148|e_gw1.16.129.1 ID=Trimin1|161148|e_gw1.16.129.1|Name=jgi.p|Trimin1|161148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp MPPDPLRTLLAGETEVTALRRDLYAVRAERGAAAARNALEAVAVRRVWSTback to top mRNA from alignment at Contig_16:1427699..1428397- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3100 ID=mRNA_3100|Name=jgi.p|Trimin1|161148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_16:1427699..1428397- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:1427699..1428397- >mRNA_3100 ID=mRNA_3100|Name=jgi.p|Trimin1|161148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_16:1427699..1428397- (Tribonema minus UTEX_B_3156 )back to top |