mRNA_3088 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140795
Unique NamemRNA_3088
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|140795 vs. uniprot
Match: A0A835Z7U3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.690e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 GSHRLVQGATDLCKAHGGKRCLHVDGDGAPCTKSAQAPTDLCKIHGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGPRCLHVD 258
            GSHRLVQGATDLCKAHGGKRCLHVDGDGAPCTKSAQAPTDLCKIHGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGPRCLHVD
Sbjct:    1 GSHRLVQGATDLCKAHGGKRCLHVDGDGAPCTKSAQAPTDLCKIHGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGPRCLHVD 86
[Close]
BLAST of jgi.p|Trimin1|140795 vs. uniprot
Match: A0A835Z8I9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.720e-5
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   28 TDLCKAHGG-KRCLHVDGDGAPCTKSAQAPTD 120
            T LC  HGG  RC+HVD DGAPCTKSA+A TD
Sbjct:   21 TRLCVGHGGGPRCVHVDDDGAPCTKSARAGTD 52
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140795 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7U3_9STRA9.690e-36100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z8I9_9STRA5.720e-571.88Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1412319..1412576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140795|gw1.16.102.1
Hectar predicted targeting categoryother localisation
TranscriptId141117
TrackFilteredModels1
ProteinId140795
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140795gene_3088Tribonema minus UTEX_B_3156 geneContig_16 1412319..1412576 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3088_1exon_3088_1Tribonema minus UTEX_B_3156 exonContig_16 1412319..1412576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3088CDS_3088Tribonema minus UTEX_B_3156 CDSContig_16 1412319..1412576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140795Trimin1|140795|gw1.16.102.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1412319..1412576 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3088 ID=mRNA_3088|Name=jgi.p|Trimin1|140795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_16:1412319..1412576+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAGCCACCGACTTGTGCAAGGCGCGACCGACTTGTGCAAGGCACACGG
CGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTACGAAGA
GCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGGCCGAGA
TGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGCCGTGGG
AGCCACCGACTTGTGCAAAGCGCACGGAGGCGGCGGGCCGAGATGCCTTC
ACGTCGAC
back to top

protein sequence of jgi.p|Trimin1|140795

>Trimin1|140795|gw1.16.102.1 ID=Trimin1|140795|gw1.16.102.1|Name=jgi.p|Trimin1|140795|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
GSHRLVQGATDLCKAHGGKRCLHVDGDGAPCTKSAQAPTDLCKIHGGGPR
CLHVDEDGTPCTKSAVGATDLCKAHGGGGPRCLHVD
back to top

mRNA from alignment at Contig_16:1412319..1412576+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3088 ID=mRNA_3088|Name=jgi.p|Trimin1|140795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_16:1412319..1412576+ (Tribonema minus UTEX_B_3156 )
GGGAGCCACCGACTTGTGCAAGGCGCGACCGACTTGTGCAAGGCACACGG
CGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTACGAAGA
GCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGGCCGAGA
TGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGCCGTGGG
AGCCACCGACTTGTGCAAAGCGCACGGAGGCGGCGGGCCGAGATGCCTTC
ACGTCGAC
back to top

Coding sequence (CDS) from alignment at Contig_16:1412319..1412576+

>mRNA_3088 ID=mRNA_3088|Name=jgi.p|Trimin1|140795|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_16:1412319..1412576+ (Tribonema minus UTEX_B_3156 )
GGGAGCCACCGACTTGTGCAAGGCGCGACCGACTTGTGCAAGGCACACGG
CGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTACGAAGA
GCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGGCCGAGA
TGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGCCGTGGG
AGCCACCGACTTGTGCAAAGCGCACGGAGGCGGCGGGCCGAGATGCCTTC
ACGTCGAC
back to top