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Homology
BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A836CJM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM9_9STRA) HSP 1 Score: 523 bits (1348), Expect = 1.780e-185 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
Query: 70 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP 885
PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP
Sbjct: 24 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXXNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHGRSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAPSDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQANHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP 295
BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A835ZFJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ7_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.230e-23 Identity = 75/145 (51.72%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 550 DTADSYVLVACRKEQQANHVVQHDQELV-------------DVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLDLGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP*TRGGTVILLAIVRALAWQK 945
DT DS+VLV C +EQQA HVV+ QE V VV+LQGEVYAK Y IVQDEFIGQ V LQL+LG+DGHARAIT FAIQEGEASKRRGA GG+ G W T I + + A A +K
Sbjct: 5 DTVDSFVLVTCGEEQQATHVVRRSQEPVWDWNYAFSCPARSGVVQLQGEVYAKGYGIVQDEFIGQ---------VNLQLELGEDGHARAITNRWFAIQEGEASKRRGAG-GGGQALGR-WFRKRTAATLVTDINIGLGEASALRK 138
BLAST of jgi.p|Trimin1|347875 vs. uniprot
Match: A0A835Z6V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V5_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.020e-8 Identity = 64/109 (58.72%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 70 PLERRAEAAVSCAAPWQCLAAQNDXXXGELXXXXXXXXXXXX--NLYALDVELGV----AEEAMLRNRAATSTLHMTTL-------------FRHGRSNSFFESDAVAV 339
P R A SCAAPWQCLAAQN XXX XXXXXXXXXXXX LYALD ELGV AEE +LRNRAATSTL T L GR+NSFFE A A
Sbjct: 240 PEASRRSARRSCAAPWQCLAAQNGXXXXXXXXXXXXXXXXXXXXKLYALDAELGVGAKVAEETVLRNRAATSTLRETALEAAEPLPRATQRVVAGGRNNSFFEGGAGAT 348
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|347875|estExt_Genemark1.C_Ctg_160155 |
| Hectar predicted targeting category | mitochondrion |
| TranscriptId | 348197 |
| Track | FilteredModels1 |
| ProteinId | 347875 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3085 ID=mRNA_3085|Name=jgi.p|Trimin1|347875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1103bp|location=Sequence derived from alignment at Contig_16:1380635..1384986+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCGCTCGTCGCGC TGCGCGGCCTCCACCCCGCCCCCTGGAGCGTCGCGCCGAAGCGGCCGTCA GCTGCGCGGCACCGTGGCAGTGCCTAGCGGCCCAAAATGACGACTCCAGC GGCGAACTGACGGCGGAGGCTCAGCAGCAGCAACAGCAGCAGCAGAACCT GTACGCCCTGGATGTAGAACTGGGGGTAGCGGAAGAGGCCATGCTGCGCA ACAGAGCGGCCACCAGCACGCTGCACATGACAACGCTCTTTCGGCACGGC CGCAGCAACTCCTTCTTTGAGAGTGACGCTGTCGCGGTTCGCATCTGGCA CTGCTCACAGGCGCAGCGAGATAGGGAGGTCGGAGGAGGGGTTCCCTGGC GCTGCGGCATGTGCAGCTGGCGCGAGCGCTGCAACAGTCTGGATGCACCG TCGGATTGGGCGCCGCTGGCAGCGCGCCCGGGGTCCACGTCGTTATTTCT GGAGGAGCGGCGCGCTTTCTGCTGGTCAGCATACAGCGCTGAAGAGGACG ACACCGCGGACAGCTATGTGCTGGTTGCATGCCGCAAGGAGCAGCAGGCA AACCACGTCGTGCAGCACGACCAGGAGCTGGTCGACGTGGTGAAGCTGCA GGGGGAGGTCTACGCCAAGGTGTACAGCATCGTGCAGGACGAGTTCATCG GGCAGGAGGCGCTGCGCGTGCCCTACGCTACCGTGACTTTGCAGCTAGAC CTGGGCAAGGACGGGCACGCGCGCGCCATTACTTACCTGCAGTTCGCGAT CCAGGAGGGGGAGGCGAGCAAGCGGCGCGGCGCACGGGAGGCAGGGGGCA GGCCCAGGGGCACTGACTGGCTGGACTGCGAGCCGTGAACGCGCGGCGGC ACAGTCATTCTGCTTGCTATAGTGAGGGCGCTGGCCTGGCAAAAGTGGTG ATGCGGCTACGGCAAGCGGTGCTAGGATTGACGTCATGCAGGGACAGGGG GGGCTTCAGGGTATGGCCAGAATGAATGGGGGCAGGCGTGTGCAACCGTA AACTGTGACGCTCCAGAGCTGTTGATTTGCAGGACAATCACGATGCATGA TAT back to topprotein sequence of jgi.p|Trimin1|347875 >Trimin1|347875|estExt_Genemark1.C_Ctg_160155 ID=Trimin1|347875|estExt_Genemark1.C_Ctg_160155|Name=jgi.p|Trimin1|347875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=296bp
MAAAAAAAAAAAAARRAARPPPRPLERRAEAAVSCAAPWQCLAAQNDDSS GELTAEAQQQQQQQQNLYALDVELGVAEEAMLRNRAATSTLHMTTLFRHG RSNSFFESDAVAVRIWHCSQAQRDREVGGGVPWRCGMCSWRERCNSLDAP SDWAPLAARPGSTSLFLEERRAFCWSAYSAEEDDTADSYVLVACRKEQQA NHVVQHDQELVDVVKLQGEVYAKVYSIVQDEFIGQEALRVPYATVTLQLD LGKDGHARAITYLQFAIQEGEASKRRGAREAGGRPRGTDWLDCEP* back to topmRNA from alignment at Contig_16:1380635..1384986+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3085 ID=mRNA_3085|Name=jgi.p|Trimin1|347875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4352bp|location=Sequence derived from alignment at Contig_16:1380635..1384986+ (Tribonema minus UTEX_B_3156 ) ATGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCGCTCGTCGCGC
TGCGCGGCCTCCACCCCGCCCCCTGGAGCGTCGCGCCGAAGCGGCCGTCA
GCTGCGCGGCACCGTGGCAGTGCCTAGCGGCCCAAAATGACGACTCCAGC
GGCGAACTGACGGCGGAGGCTCAGCAGCAGCAACAGCAGCAGCAGAACCT
GTACGCCCTGGATGTAGAACTGGGGGTGCGTGCCCTGTAATCGCGCTCAG
CGTCGCCTGCCGGCAGCCACACATGAGTAGCTTGCCACACGGTTCTTTTG
TATTCCATGTTGAGGCACACATTATTAGCTTGCCATACGGCTCTGTTGTG
CTCCATGCGGGTGCAAGTCCTTGTGGCAGATCATGAGCGCGAAGGCGAGC
CACCGCGCTATGCGCATTGCCATGGTGTCAGTGCTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGCCCCGCACGCCGCATCTAGGCGAGCTATATGTCA
TCGCTGCAACAAAATACTGCTCTGAACTACCATGATGCAATGCGCGCTGC
CCTGTATGGTGTTACAGTAGACGGTGGCCTTGGCGAGCTGCGGCACTCGC
TGCCGTGATGAGAACCTGCAGCTAGAGGAGCCCGGCGCAACGCCCTCTTT
CCGTCAGCACTTGCTGACCCGCTGTGATTCCGCGTGCTCATGGCTGCAGC
GGCATGTCACTGCCGTAGCGCTGCAACCACCTTGAAGACTTACACAACAC
AGCAGCCGCGCAAACACTGCAGCCTGGCACCTCCCATGGGCTCGAGTCGA
ATGCTTGTGACCTAACCGTAATCCCAAGTGTTCTGCAACACAAGGACAAA
TGCGGCGCTGCAGCCGTCGGTGCTGCTCGCTGCAGCATTAGGCGCTCCGC
TTCTGCCGCTGCAGTTGCTGTTGCACGCTTGTGCTGAGCTGCTGACGACT
CCGGGCACCTTCTGCAGCACCCCGTTTGCAAGCACATGTTGCCGTTTACT
TAGATAGAGACACAGGCACGCTCGCGCGCACTGCGCCGGTGCCCTGACAC
TCCATCATCTTGCCCGTTGACACAATCGTGGAAACCGCAATGTGCGTCAG
GAAGACCAGCACCTTGTGCACTACTTGGGTTTAACTGTGCCTTTGCTTGG
AGGGCGTGCCCTGGTCACTGCAGCCCCGAAGTTTCAGTTTTCGCCCAGCA
CTCAGTTGCGGCAGCATTTGCCACCACTGCACGGATGGCCGAGCAGACGG
CGTAATGCGTGATAGGGGGGCGACCGGCGCGCTGCCTGGTCCCGCCCCCT
AGCCCTAATCCTCATCAAACCCTACCGCTGATATAACAGGGCAGCCACCG
GCGCGCAGCCCGATGACGCTGCCTCTTGATGGAGGCCCCATCCGCAGCAG
TGACGTCACTGCCACGCTGCTGCCGCCATCGCCTCCGCACAGGTAGCGGA
AGAGGCCATGCTGCGCAACAGAGCGGCCACCAGCACGCTGCACATGACAA
CGCTCTTTCGGCACGGCCGCAGCAACTCCTTCTTTGAGAGTGACGCTGTC
GCGGTTCGCATCTGGCACTGCTCACAGGTGAGCGTGTTTAATATCAGCTA
TGGCTCCGGCTGGGGCTGGGGGGGACGGGAGGCTGCACTAACCCTTAGCC
ATGACCATACATCGCAGTATACTGAATGTTTTCATCAAGTGCCATGTCAC
GCACTTGAGCGGCTCACACGCACTCTGCCGCGTCTCTCCGCGCAGCAGCA
GCAGCAGCATCGACAGCAGCAGCGCGGCACCGCTCGATGCAGGCGCGCAG
GCGCAGCGAGATAGGGAGGTCGGAGGAGGGGTTCCCTGGCGCTGCGGCAT
GTGCAGCTGGCGCGAGCGCTGCAACAGTCTGGATGCACCGTCGGATTGGG
CGCCGCTGGCAGCGCGCCCGGGGTCCACGTCGTTATTTCTGGAGGTGCGC
GATGCGCTGAGATGCACTTGAGTTGAAAAGTAGAATGACCGTGATTGAGA
GCGGACATGACTTGGATGCAACTTTGAAGCTACTTCTTTAAGCCGAAATG
CTGCTTTCAGCTGAAACTTCAACATGGGAGGTCGCGCAATCGCCCTCCAA
GACCTGGAGGTGTGCGACCTGTGGTGTAACCCTAACCCCAATCCCTTCCC
TTAACTCTTACCCTGTCCTCATAGTCTCCGGCGAGCAGTTCTTCTTACAG
CACGGCCGAGTCACTCTGCACCTCATCCATCTCAATTCATTCTTCACCGA
TTTGATGAATTCCTCCATCACGCTTCCGACTCTGTCAGGTCACGGTACTT
TGAAGAAGATGAAGTGTCTTACACCGCTGGGCCAGCTGTGCATACAGCGT
CCAAAAGGCTAAGCGCCTGACCTGATAAAGCTTACGCCTCTAACCATCTT
CCTCACAGGCATGGGCAAGTCACTGCATTCTCTCCCTTCAGATCCCCCCG
CCGCTCTCCCTGGCGCAGTCGATGACCATGTAAACCGCTGGCTTTGGCAC
GTGCACATGCAAACTCACGCACACATAGCTCCCTGCACATTGCTGATCAT
GTTGGCGTGTTCGCGTTCACAGGAGCGGCGCGCTTTCTGCTGGTCAGCAT
ACAGCGCTGAAGAGGACGACACCGCGGACAGCTATGTGCTGGTTGCATGC
CGCAAGGAGCAGCAGGTGCGTGCAGCGCACATGCACATTGCACCTCTGAG
CTGCTATGAAGTCATGGCCTCCATGGGGCAGCCTCAGCAACCATCTTGGC
ATCATGATAGCATAGATGTGCATCTGCTTGTGACGTGTCAGCGCGCACGA
TGACCTGGAATCCACGTTGTGGCTGAGCACTGAGGCACTGCAGACGATAT
ACATGGTTTGGCGGCATGATGCGACACTGTTGAGCAGTGTTCACGGATGC
CTGTGACACTCTACGGAGCGCTGCTGCACCGGATTATCAAACAGAGTACT
ATACCGCGTCGCGCACGCATTGCATGCAGTTGCTGCACCAGAAAGCGCGC
CTCGAGCGCTGCCCACGCGATTTCACGCTGTGCTCAGGGGTCATTGCCTG
TCAACAGTAGGTATCGATGACCGCCTGTGCCACTCTGTGGAGCGCTGCTG
CATCAACCGCTTGCGCCTCGCGCCGCGCGCACGCGCCGCACCGCAGGCAA
ACCACGTCGTGCAGCACGACCAGGAGCTGGTGTGAGACTGGACCTACGCG
TTCAGCTGCCCGGTGCGCAGCGACGTGGTGAAGCTGCAGGGGGAGGTCTA
CGCCAAGGTGTACAGCATCGTGCAGGACGAGTTCATCGGGCAGGTCTATG
CCGTGGACTGAACTGGGTAGTCTGATCTGACTCTTGTTCGATACAATGCC
ACTCTGAATTGAGCGGATGAACGCGTCAAGAGGTGGCCTCGCGTTAGTGA
GTAGCGTGTCGTGAGTAACGGCGTGTACATGCACTGGTGAGGCCCCGCAC
GTACCCAGGTATGTATGAGGTGGGCTGAGCTGGGCAGAGTATTCTAAGTT
TTGTTCTGCCCAACCCAACCAGATGGTGACGCTGTATTGGAGTCTCACGG
AGTGAGTGAGTGAGTTGCAGTAGAAGCATATGGCTCGAGAGGCCATGGCT
TCTGATCACTGACTCAGGAGGCGCTGCGCGTGCCCTACGCTACCGTACGC
GCTTCTGCTTGAACGCACCGCCGCCAGTGCAACTTCACCAGCGCAGAGAG
TCATTGAACTACCTGGAACCCCCCCTTGACCAAAAGCGTCAGACATGCAA
AGTCAAACGACTTCCCTGCATCCTGTGTCAACGCTCAAAATCGGGATGCC
CCCCCCCCCCCCAATGCCAGGTGACTTTGCAGCTAGACCTGGGCAAGGAC
GGGCACGCGCGCGCCATTACTTACCTGCAGTTCGCGATCCAGGAGGGGGA
GGCGAGCAAGCGGCGCGGCGCACGGGAGGCAGGGGGCAGGCCCAGGGGCA
CTGACTGGTTCAGCAAGCACACCGCCGCCACTCTGATCACCAATACCAAC
ACTGGCTTAGGAGAGGTGAATGTGCATAGCAAGTGCGGTCAGTTGCAAAG
TGGGAAGTGATTGTGTTCATGGTTGTAAGCAGCTGTATGTATATCTGATG
TCAATCGTTGCTGCAAAGGCTGGACTGCGAGCCGTGAACGCGCGGCGGCA
CAGTCATTCTGCTTGCTATAGTGAGGGCGCTGGCCTGGCAAAAGTGGTGA
TGCGGCTACGGCAAGCGGTGCTAGGATTGACGTCATGCAGGGACAGGGGG
GGCTTCAGGGTATGGCCAGAATGAATGGGGGCAGGCGTGTGCAACCGTAA
ACTGTGACGCTCCAGAGCTGTTGATTTGCAGGACAATCACGATGCATGAT
AT back to topCoding sequence (CDS) from alignment at Contig_16:1380635..1384986+ >mRNA_3085 ID=mRNA_3085|Name=jgi.p|Trimin1|347875|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=888bp|location=Sequence derived from alignment at Contig_16:1380635..1384986+ (Tribonema minus UTEX_B_3156 ) ATGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCCGCTCGTCGCGC TGCGCGGCCTCCACCCCGCCCCCTGGAGCGTCGCGCCGAAGCGGCCGTCA GCTGCGCGGCACCGTGGCAGTGCCTAGCGGCCCAAAATGACGACTCCAGC GGCGAACTGACGGCGGAGGCTCAGCAGCAGCAACAGCAGCAGCAGAACCT GTACGCCCTGGATGTAGAACTGGGGGTAGCGGAAGAGGCCATGCTGCGCA ACAGAGCGGCCACCAGCACGCTGCACATGACAACGCTCTTTCGGCACGGC CGCAGCAACTCCTTCTTTGAGAGTGACGCTGTCGCGGTTCGCATCTGGCA CTGCTCACAGGCGCAGCGAGATAGGGAGGTCGGAGGAGGGGTTCCCTGGC GCTGCGGCATGTGCAGCTGGCGCGAGCGCTGCAACAGTCTGGATGCACCG TCGGATTGGGCGCCGCTGGCAGCGCGCCCGGGGTCCACGTCGTTATTTCT GGAGGAGCGGCGCGCTTTCTGCTGGTCAGCATACAGCGCTGAAGAGGACG ACACCGCGGACAGCTATGTGCTGGTTGCATGCCGCAAGGAGCAGCAGGCA AACCACGTCGTGCAGCACGACCAGGAGCTGGTCGACGTGGTGAAGCTGCA GGGGGAGGTCTACGCCAAGGTGTACAGCATCGTGCAGGACGAGTTCATCG GGCAGGAGGCGCTGCGCGTGCCCTACGCTACCGTGACTTTGCAGCTAGAC CTGGGCAAGGACGGGCACGCGCGCGCCATTACTTACCTGCAGTTCGCGAT CCAGGAGGGGGAGGCGAGCAAGCGGCGCGGCGCACGGGAGGCAGGGGGCA GGCCCAGGGGCACTGACTGGCTGGACTGCGAGCCGTGA back to top
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