mRNA_3077 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347874
Unique NamemRNA_3077
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 441 bits (1134), Expect = 7.670e-156
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 3 
Query:   99 MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKVGLEELNKLEV 728
            MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKVGLEELNKLEV
Sbjct:    1 MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKVGLEELNKLEV 210
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 5.030e-102
Identity = 148/238 (62.18%), Postives = 188/238 (78.99%), Query Frame = 3 
Query:   24 VVGRAGPSLASNPPPEYDDSGLLDRMLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-------LCHKVGLEE 710
            + GRAGP+ A+   P YDD+  LDR+LLGLFR KLA E+  DG   +PGY GL++MI+ LN+   +P+   TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+EID G +GVGHGLLV+RCR+LE AGCASVC+NTCK+PT+EFF KDMGL L+MTP+Y+DFSCQFSF K PL  + DE F VACFEQCP++ + ++        CH++ ++E
Sbjct:   82 IRGRAGPTDAT---PTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDE 314
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 267 bits (683), Expect = 1.380e-85
Identity = 126/224 (56.25%), Postives = 162/224 (72.32%), Query Frame = 3 
Query:    3 ADSSHVRVVGRAGPSLASNPPPEYD--DSGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNK 668
            AD +    + +AGP+ A+   P+Y   D+  L+R+++ LFR+K+A  +  D    GY  +I++ R LN    YPTA DTQ   R +L SLFP WLPGAF  MFS+P P  SCR+NA+ T +  QWLMGP K+NDVEIDGGQ+G G G+LV+RCRYLEEAGCAS+C+N+CK+PTQEFF KDMGLPL MTP+YDDFSCQF+FGK P    +DE F+  CF QCP++
Sbjct:   11 ADGAAPAALRQAGPAAAA---PDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQLQGYPAIIDLTRRLNRQ--YPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPSR 229
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 265 bits (678), Expect = 2.940e-85
Identity = 126/226 (55.75%), Postives = 159/226 (70.35%), Query Frame = 3 
Query:    6 DSSHVRVVGRAGPSLASNPPPEYD--DSGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKAST 677
            D +    + +AGP     P P Y   D+  L+R+++ LFR+K+   +  D    GY  +I++ R LN    Y TA DTQ A R++L SLFP WLPGAF VMFS P P FSCR+NA  T +  QWLMGP K+NDVE+D G++G G G+LV+RCRYLEEAGCAS+C+N+CK+PTQEFF KDMGLPL MTP+Y+DFSCQF+FGK PL   QDE F+  CF QCP+K  T
Sbjct:   55 DGAAATQLRQAGPGT---PAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQLQGYPAIIDLTRRLNRQ--YQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSKKRT 275
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 264 bits (674), Expect = 7.790e-85
Identity = 127/229 (55.46%), Postives = 164/229 (71.62%), Query Frame = 3 
Query:   33 RAGPSLASNPPPEYD--DSGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKVGLEEL 713
            +AGP  A+   P+Y   DS  L+ +++ LFR+K+   L  D    GY  +I++ R LN    + TA +TQ+A R +L +LFP WLPGAF VMFS+P P+FSCR+NA  T +  QWLMGP K+NDVEIDGG++G GHG+LV+RCRYLE+AGCASVC+N+CK+PTQ FF KDMGLPL MTP+YDDFSCQFSFGK P   ++D  FA  CF QCP+K S   +C  + L  +
Sbjct:   50 QAGPVDAA---PDYKPIDSQPLNIIVMALFRRKMVEALGSDSKLSGYDAIIDLTRKLNTK--FRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGIELPSM 273
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 261 bits (666), Expect = 3.200e-84
Identity = 122/221 (55.20%), Postives = 160/221 (72.40%), Query Frame = 3 
Query:   33 RAGPSLASNPPPEYD--DSGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLC 689
            +AGP     P P+Y   DS  L+++++ LFR+K+ A +  D    GY  +I++ R LN    Y  A   Q   RK+L+SLFP WLPGAFAVMFSKP P+FSC++NA  T +  QWLMGP K+NDVE+D G +G G G+LV+RCRYLE+AGCAS+C+N+CK+PTQEFF KDMGLPL MTP+Y+DFSCQF+FGK PL  + DE F+  CF+QCP++A+    C
Sbjct:    1 QAGPV---EPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQLSGYEAIIDLTRRLN--ASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAARYSDC 216
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A836B305_CHLIN (D27-like_C domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A836B305_CHLIN)

HSP 1 Score: 258 bits (658), Expect = 1.920e-83
Identity = 118/200 (59.00%), Postives = 148/200 (74.00%), Query Frame = 3 
Query:  105 LGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKVGL 704
            + LFR+K+   L  D    GY  +I++ R LN    + TA +TQ+A R +L +LFP WLPGAF VMFS+P P+FSCR+NA+ T +  QWLMGP K+NDVEIDGGQ+G GHG+LV+RCRYLE+AGCASVC+N+CK+PTQ FF +DMGLPL MTP+YDDFSCQFSFGK P   E+D  FA  CF QCP+K +    C  + L
Sbjct:    1 MALFRRKMVDALGADSKLSGYDAIIDLTRKLNTK--FRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNAFATAMTCQWLMGPCKVNDVEIDGGQVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFERDMGLPLTMTPNYDDFSCQFSFGKTPDPVERDPAFATPCFVQCPSKRARTPACGGIEL 198
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 259 bits (662), Expect = 3.350e-83
Identity = 124/213 (58.22%), Postives = 156/213 (73.24%), Query Frame = 3 
Query:   36 AGPSLASNPPPEYDD--SGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNK 668
            AGP+   +P P Y D  S  ++ +++ LFR+K+ A L  D    GY  +I++ R LN    + T  +TQ+A R +L +LFP WLPGAF VMFSKPFP+FSCR+NA  T +  QWLMGP K+NDVEIDGG +G GHG+LV+RCRYLE+AGCASVC+N+CKIPTQ FF KDMGL L MTP+Y+DFSCQF+FGK P+  E DE F   CF QCP+K
Sbjct:   42 AGPT---DPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELYGYDAIIDLTRRLNSK--FRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCKIPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 258 bits (658), Expect = 4.570e-83
Identity = 122/214 (57.01%), Postives = 153/214 (71.50%), Query Frame = 3 
Query:   33 RAGPSLASNPPPEYD--DSGLLDRMLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNK 668
            +AGP     P P Y+  DS  L+R ++ LFR+K+ A +  +    GY  ++++ R LN     P   DTQ   R++L SLFP WLP AF VMFSKP P+ SC++NAWVT++  QWLMGP K+NDVE+DGG++G G G+LV+RCRYLEE GCASVC+N+CKIPTQEFF KDMGLPL MTP+Y+DFSCQFSFG  P     DE FA  CF QCP+K
Sbjct:    7 KAGPET---PAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSDKEGYDAIVDLTRLLNSKSSNP--RDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSK 215
[Close]
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Match: A0A8J9RQD0_9CHLO (Beta-carotene isomerase D27, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQD0_9CHLO)

HSP 1 Score: 248 bits (633), Expect = 1.080e-79
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 3 
Query:  105 LGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNK 668
            + LFR+K+   +  D ++ GY  ++++ R LN     P   DTQ   R++L SLFP WLP AF VMFSKP P  SC++NAWVT++  QWLMGP K+NDVE+DGG++G G G+LV+RCRYLEE GCASVC+N+CKIPTQEFF KDMGLPL MTP+Y+DFSCQFSFG  P    +DE FA  CF QCP+K
Sbjct:    1 MSLFRRKMIDAIGSDSNNKGYDAIVDLTRVLNSQSNNP--RDTQIKTRQILLSLFPSWLPPAFKVMFSKPLPDLSCQLNAWVTMLTCQWLMGPCKVNDVEVDGGRLGSGQGVLVERCRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPVTEDEAFATPCFAQCPSK 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347874 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDY9_9STRA7.670e-156100.00D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
D8LEW1_ECTSI5.030e-10262.18D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A2V0P122_9CHLO1.380e-8556.25D27-like_C domain-containing protein n=1 Tax=Raphi... [more]
A0A0D2MYG1_9CHLO2.940e-8555.75D27-like_C domain-containing protein n=1 Tax=Monor... [more]
A8IC34_CHLRE7.790e-8555.46Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A7J7QQS2_9CHLO3.200e-8455.20D27-like_C domain-containing protein n=1 Tax=Scene... [more]
A0A836B305_CHLIN1.920e-8359.00D27-like_C domain-containing protein n=2 Tax=Chlam... [more]
A0A8J4BT63_9CHLO3.350e-8358.22D27-like_C domain-containing protein n=2 Tax=Volvo... [more]
I0YX40_COCSC4.570e-8357.01D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A0A8J9RQD0_9CHLO1.080e-7959.57Beta-carotene isomerase D27, chloroplastic n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1291205..1296622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347874|estExt_Genemark1.C_Ctg_160147
DescriptionDomain of unknown function (DUF4033)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28YJ7@1|root,2R5D2@2759|Eukaryota
Evalue1.76e-95
Seed ortholog2880.D8LEW1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
TranscriptId348196
TrackFilteredModels1
ProteinId347874
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347874gene_3077Tribonema minus UTEX_B_3156 geneContig_16 1291205..1296622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347874Trimin1|347874|estExt_Genemark1.C_Ctg_160147Tribonema minus UTEX_B_3156 polypeptideContig_16 1291292..1296524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3077_10exon_3077_10Tribonema minus UTEX_B_3156 exonContig_16 1291205..1291327 -
exon_3077_9exon_3077_9Tribonema minus UTEX_B_3156 exonContig_16 1292165..1292230 -
exon_3077_8exon_3077_8Tribonema minus UTEX_B_3156 exonContig_16 1292756..1292804 -
exon_3077_7exon_3077_7Tribonema minus UTEX_B_3156 exonContig_16 1293547..1293605 -
exon_3077_6exon_3077_6Tribonema minus UTEX_B_3156 exonContig_16 1293959..1294060 -
exon_3077_5exon_3077_5Tribonema minus UTEX_B_3156 exonContig_16 1294371..1294400 -
exon_3077_4exon_3077_4Tribonema minus UTEX_B_3156 exonContig_16 1294966..1295066 -
exon_3077_3exon_3077_3Tribonema minus UTEX_B_3156 exonContig_16 1295385..1295421 -
exon_3077_2exon_3077_2Tribonema minus UTEX_B_3156 exonContig_16 1295870..1295995 -
exon_3077_1exon_3077_1Tribonema minus UTEX_B_3156 exonContig_16 1296498..1296622 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3077UTR3_3077Tribonema minus UTEX_B_3156 three_prime_UTRContig_16 1291205..1291291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3077CDS_3077Tribonema minus UTEX_B_3156 CDSContig_16 1296498..1296524 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3077UTR5_3077Tribonema minus UTEX_B_3156 five_prime_UTRContig_16 1296525..1296622 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3077 ID=mRNA_3077|Name=jgi.p|Trimin1|347874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=818bp|location=Sequence derived from alignment at Contig_16:1291205..1296622- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGACAGCAGCCATGTGCGAGTGGTGGGGAGGGCAGGGCCAAGCCTT
GCTTCGAACCCGCCGCCTGAATATGACGACTCTGGGTTGTTGGATAGAAT
GCTGCTGGGACTATTCAGGAAAAAGCTGGCCGCGGAGCTACAGTACGATG
GCAGCGATCCTGGCTATGCAGGCCTGATTGAGATGATACGGTCGCTGAAC
GATGGGCCTGGCTATCCTACGGCTCATGACACGCAGCAGGCGGCTCGCAA
GGTACTCCAGTCATTATTTCCCCCGTGGTTACCAGGAGCATTTGCGGTGA
TGTTCAGCAAGCCCTTTCCTCAATTTTCCTGTCGAATGAACGCGTGGGTG
ACACTGGTGGCCAGCCAGTGGCTCATGGGCCCCAGCAAGATCAACGACGT
GGAGATTGACGGCGGGCAGATGGGCGTTGGGCATGGCCTGCTGGTCAAGC
GCTGCAGATACCTGGAAGAGGCAGGCTGTGCCAGTGTGTGTGTCAATACA
TGCAAAATACCCACACAAGAGTTCTTCATGAAGGACATGGGGCTGCCTTT
GCAGATGACACCGGACTATGATGACTTCAGCTGCCAGTTCAGCTTTGGCA
AAATTCCGCTGGAACCTGAACAAGATGAGGTGTTTGCAGTGGCATGCTTC
GAGCAGTGTCCCAACAAAGCATCCACCAAACGACTTTGTCATAAGGTTGG
TCTTGAAGAGCTCAACAAGCTAGAAGTATAGGTTTGGACTACAAGTCCAA
GGCCATTGTGGGCCGCCAGATTATCACAGATGCGCCACAATCTTCAAATG
TAATATGTTTGTTCATAA
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protein sequence of jgi.p|Trimin1|347874

>Trimin1|347874|estExt_Genemark1.C_Ctg_160147 ID=Trimin1|347874|estExt_Genemark1.C_Ctg_160147|Name=jgi.p|Trimin1|347874|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAAR
KVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKIND
VEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLP
LQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKRLCHKV
GLEELNKLEV*
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mRNA from alignment at Contig_16:1291205..1296622-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3077 ID=mRNA_3077|Name=jgi.p|Trimin1|347874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5418bp|location=Sequence derived from alignment at Contig_16:1291205..1296622- (Tribonema minus UTEX_B_3156 )
CAGCAGACAGCAGCCATGTGCGAGTGGTGGGGAGGGCAGGGCCAAGCCTT
GCTTCGAACCCGCCGCCTGAATATGACGACTCTGGGTTGTTGGATAGAAT
GCTGCTGGGACTATTCAGGAAAAAGGCAAGTGCTGGGCACCGTTTGCTAC
ATGTGCTCAGCCCATGGTGTTTGTCGGTACGCACATGCACCAACTCACTC
ACATACTCTATACTATGTGCACTAGAGCACCATTTTTCGCAGCATGGGAA
CTTTGAAATCGGTTGTGTGCACAGCGACAGCACGGACTTCGCATGCACTG
GTCGTCGAGCATGCCCTAGGCTGCTAGTGCATCTAGTGTCCATCTCACGT
GCTGCAGATTGCCATGCCCGCGATCGACAATGTACGCTACGTCTGGATAT
CTGTAGCATTGTCAAAAGCATCTCTAAACAAGCGAAGGCTGGTGGAACTA
GTTGACATACTGCATGTCGTTGTTCCCGCAAAGTTCTTGTTTGCTTGTGT
GTGTTCACTTTGCGCTACTTTGGGACCAGACAGCTGGCCCAATGGATTGA
AATCATTGCCTATTTGACTGTGCTGGCCTCGATTATCTGTTTTTGCATGT
GCATGTGGGCTGGTGGTGGGTACGCAGCTGGCCGCGGAGCTACAGTACGA
TGGCAGCGATCCTGGCTATGCAGGCCTGATTGAGATGATACGGTCGCTGA
ACGATGGGCCTGGCTATCCTACGGCTCATGACACGCAGCAGGCGGCTCGC
AAGGTGCGATTTCGCTTCAAGCAACACAATATCAAATCCGAGTTTGCAAG
AAACTGCGAGCTGTGCTGGGTCAATTGTCTGATGTGATGATTGTACATAC
AAGGTGCTAAGAATCCTCAGTATGTACACGCTTCCAAGTGCGATTGTAGT
GGTATGTATGCCGAGGCCGTCAGCGTGCAGGCGAATTTGCTGTACTGTAT
TGTGCACCTCACTGCATTGACAGCCTGTGGATGACAGAGCTTATGACCGA
GCTTCACGTTTCTGCTTGCATCATGCTGATTTGATAGCCCAAGCACATGC
AGTGTACAGTACGGTACACAGTACACATTTTGTGCGATGTAGCTAAGCAT
AGCTAAGCATCAGCCTGCAGTCGGTTTATTGTCACCATCATCATTACAAC
TGTACATGATGTTGAAGCGATTGGCGGTCGTTGGTGTTGTTGTTGATGCA
GGTACTCCAGTCATTATTTCCCCCGTGGTTACCAGGAGGTGAGCAGATCT
GTTGTAACATAAATGAAAGCAGATATATATATATGTATGGACGTCATGTG
CGCCACAAGGGCGGCTACTATACAAGGGCGCTCGATATAGGAGCAGTCAC
AGTATAAGATCGGCCTGGTGGCTGGACCTAGATTCAATCGATATAAGATC
AGCTTGGTGCTGCTTGGGGCTGATGGCTCGTAGTGTCCACTACCGCTACC
AGCTTAAACTGCACACACTGGCGTGGTGTTGGCCTCTCATTTATTCTTTG
AAGTATGTTTGAGTTAATACGTGTCATGGTCATGTTGTGCTTGTTCTGCT
CTGCAGCATTTGCGGTGATGTTCAGCAAGCCCTTTCCTCAATTTTCCTGT
CGAATGAACGCGTGGGTGACACTGGTGGCCAGCCAGTGGCTCATGGGCCC
CAGCAAGGTGAGCTCATCATGTCAACCCTACGAAATTACTTCACATGTAC
AAAAAGTATGGCCTAAGATGTGTACGTGCCTGACTAGCCCGCTTGGTTGC
CTCTCTCAATTTGTGATGGTTGCGGAACGCATCTGGTGGCATGCACACTG
CAATTCAATGAAGCTGCTGTAGGTATTGAGCTGTAAGTGTCTTGCACGTT
GCCTGCGGCATGCAATGATGAAAACGAAATGTTGCTCAACAGTGTGTGTC
GCTGGTCTGATGAGCTAAACACTACTTTGGACATCGCATCAAAATGTAGC
ACATGTGTGTTGATACATCACAAAGTGCTTTGACCATCCCCTAAGAGCAT
GCTTCATGCAATGCGATTTCAGCTTATGCACGTCTCATGTGTCTACCATG
TGGGACAAACACACACCATCAGGCATTACTACCATTGCCATGCCCTTCAT
GACATCTCTGAACCAGGAGCTGTTATGTGATAGTGCTCTGGCATACTGGC
CAGCCCATGAGGTACCATATGAGGCAAATTGGTAGCATAACCACTCGTGT
TCCCGTTGCTTGCTGCTCACAGATCAACGACGTGGAGATTGACGGCGGGC
AGGTGAGGTCATGTCACACAGTCAAATGTACTGCAGTGTACATTACACAC
TTGGCATCAAGCTATTGAGTGCGTTGACCGTGTCAAATTGCCCATGATGC
CTGGCGTTTTCTTCTCGCATCTTGTTGATCGCTGCACGTCTTGCCTTTGA
AGAACGTTTGCGCAGTAAGTCATGCATGCAATGATTTGACCCCCTGCTGC
TTGGTATCGTGTTATGTAGCCTCGGTACCTCCTGTGCTCACTTGAACTGT
ACATGCCAACATGGTGCATCAGTCACCTCGTTCCTACCATGATGCTGGTG
ATCGTATTGCAGATGGGCGTTGGGCATGGCCTGCTGGTCAAGCGCTGCAG
ATACCTGGAAGAGGCAGGCTGTGCCAGTGTGTGTGTCAATACATGCAAAA
TACCCACACAAGAGGTACGGAACTGCTCCTATTTGTTCGTGTGGGGAACA
AAACGAACATTGCGTGAATTGAGCCTGGCGAACTCTGAAATGAATCATGC
AGCTATTGGTACTTCGAGATTTCAGTGTGTGCACACGAACCACTGCTCAG
AAGGCTGTGGTACACTAAGTACAGCTTTGCAATCATGTTTTCCGAAACTG
TATGTGGGCACACTGCAGTGAGCACAAGATGTTGCCATGCAGCTCATAAG
GTAGTCAGGTTATGACAAGTATATATTTTGACGCCGTGCATACATCCTGC
GCCACCTGGCATATAATGATAACCACTCTGATCATCATCCGCATGCCTGG
ACATCTTGCTGCTGCAGTTCTTCATGAAGGACATGGGGCTGCCTTTGCAG
ATGACACCGGACTATGATGACTTCAGGTACTGTACAGCAGGCACGCTTGT
TTGGATGGACAGAGCGACCGTTGCCGATTTTCAGCTTCGCTCGCTTTGCT
CAATCTAGCTGCAGGCCATTGTGTAGCAACCCCACCACTTGAACTGCAAC
AACTTCAAGGGCAGTGGTGTGCCCTCCAGCTTGTCCTTGCAATGCACTCG
ATGGCTCCACGAAAGCCCAGTGACATACCTATATGCCAGGCAATGGCAGT
AAGACGCCGGGAAGCAAAATGCTGTGGGCTCGTGCTTTAGGCAACCTTCA
GCCGCAGGAGTAGATGTCACTGCTTGATTACGGCAAGCAATGCGTTGGGA
ACAACAGGCCACAGTGGTCGTGAAAGTCCACAGTTTGTCATTGCCTCTGC
ATGTGCAAGTGGGCTTGTGAATGCACCAACTACGGCCAGGCGTCTTACTA
GTAAGGTCGATGCATATTGAGCACATTGTGTGTGCTGATACATTGCTTAT
TCCAAGAACAATCTGTCTTAGCCTTTCCTTCCTGTTCGAGCCCGTGAAAT
GGCCTGAGTCCCCATTTGATTTATTCAAGCCCTGACGCAAACCATATGGG
GTGCATGTTCGCCATCGCTTGAGGTGGTGTGTTATGCTCCGCAGGCGCAC
ACCCTGAGGCTCGTGATACCCACTGAGCACTTTGTACATGAGTCCACGTC
AACACACGTTTCGCAATAGCAATGCGCGCATGCTCTGCTCCTGTGCTTCT
GTACTATCGTTGTTGCAGCTGCCAGTTCAGCTTTGGCAAAATTCCGCTGG
AACCTGAACAAGATGAGGTAAGCGGCGTAGTGGCCTATTTTGAAACACAC
AGTAGTGCCTTGGTGGCGTGAATTTAACCATAACGCCCATAGCAGGAGTT
CGAGTGGTTATAAATGTGTGAGTGCCGCCTTGATCTGTTGCAAGATTAGA
CTACATGCAGTGTGCAAGTACAATCGCTGTAATACTGTTTGGAGAGTGCA
CAGACACTGGCCTTTTGTTGGCAGCAATTATTCCCACAATGCATTTTGTT
CCTGTTATCGATTGTTGCATTGCAGCTGCTGCTAGCAATAATGTTTTATC
CAGCATCATGGAAGCACGGCAGGCTTGCATTTTCTGCTGTTTTTCGCCCT
GCAAGATGGAAAGACGGCATGCTTGTACTCCAACACTTTTTTACAATTAT
GTCACACGATGGTCTGACGGTGCTTGTACTAGACTAGTTGCTGCTACACA
TGCCCGTCGTGAACTTATTTGCAGCATGACATGTGTGATATCAACAGTAG
GCACAACTATTGCGCCTTGTGTGGTGGTTCTGCTATCTGCAGGTGTTTGC
AGTGGCATGCTTCGAGCAGTGTCCCAACAAAGCATCCACCAAACGACTTT
GTCATAAGGTGAGCGCAGCAATGCTGTTGGAAAGAGCTCTACCACGCATG
CCAGTGGAGTGTGTCGGCCACCCAGCCCTTCTGTCTTTCGTTTCAGTTCA
TGGCAAGCAGTGCATGTTTTGTTTATTCGCAGCCATATGAAGCAATGAGT
GTTCTGCACGTCATGATGCTGCGTATTGTAAGGTCTTGTGTTTCAGACGG
AGCGCTTATGATAGTTTGAAGTTCGTTCAAAGAGAAAAATCGTCAAAACA
TCAGCGCTTATCCAGCATCATGCAAACCAGATTGATTCTGGGCGGATATG
CATCTATATCATGCATTGCATCCCTAAAGTACCTGTAGTTGTAGGCACAG
TAATGCATACTTCTCCGAGTTGAAAGTACTGGTACACAGAGCATCACAGT
GACTGGCCTCGGTACGGCTTGCCTTGCTCATCAAGCATGTCATGCAGCGG
TATGCTGGCATGCATTTATTTGTGTGCTACAGTAGTAAAAATCATCTCCA
TGAGAGCATCGCTCCGAGTTTGGATACTTGGACGCATGGCGCATACTGTG
TGATTGATCCTATGTCTCTGCAGCCGTACATAACCACCAGCAGCAACTCG
GCGACTATGAATGTGCATGTTCTACACACAAGAATACTTGCATCTGCGTG
ATGCTGTTGATTTGTCTTTGTCCAGTTTTCTTGATCGGTGATTGGTGCTG
CACACCATCTGTTGGCGTATTTCATAGCTGCATGTGCTTATGTTCGCATG
ATAGCGCGGTGCACCACGCCTGAACATGCTACCTTGCCTGAACATGACTC
ATGATTGTGATGTGCTGTGGTGTCTGTGAACACTGCTTCATGCAGGTTGG
TCTTGAAGAGCTCAACAAGCTAGAAGTATAGGTTTGGACTACAAGTCCAA
GGCCATTGTGGGCCGCCAGATTATCACAGATGCGCCACAATCTTCAAATG
TAATATGTTTGTTCATAA
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Coding sequence (CDS) from alignment at Contig_16:1291205..1296622-

>mRNA_3077 ID=mRNA_3077|Name=jgi.p|Trimin1|347874|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_16:1291205..1296622- (Tribonema minus UTEX_B_3156 )
ATGCTGCTGGGACTATTCAGGAAAAAGCTGGCCGCGGAGCTACAGTACGA
TGGCAGCGATCCTGGCTATGCAGGCCTGATTGAGATGATACGGTCGCTGA
ACGATGGGCCTGGCTATCCTACGGCTCATGACACGCAGCAGGCGGCTCGC
AAGGTACTCCAGTCATTATTTCCCCCGTGGTTACCAGGAGCATTTGCGGT
GATGTTCAGCAAGCCCTTTCCTCAATTTTCCTGTCGAATGAACGCGTGGG
TGACACTGGTGGCCAGCCAGTGGCTCATGGGCCCCAGCAAGATCAACGAC
GTGGAGATTGACGGCGGGCAGATGGGCGTTGGGCATGGCCTGCTGGTCAA
GCGCTGCAGATACCTGGAAGAGGCAGGCTGTGCCAGTGTGTGTGTCAATA
CATGCAAAATACCCACACAAGAGTTCTTCATGAAGGACATGGGGCTGCCT
TTGCAGATGACACCGGACTATGATGACTTCAGCTGCCAGTTCAGCTTTGG
CAAAATTCCGCTGGAACCTGAACAAGATGAGGTGTTTGCAGTGGCATGCT
TCGAGCAGTGTCCCAACAAAGCATCCACCAAACGACTTTGTCATAAGGTT
GGTCTTGAAGAGCTCAACAAGCTAGAAGTATAG
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