mRNA_3070 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161308
Unique NamemRNA_3070
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A836CJM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM3_9STRA)

HSP 1 Score: 205 bits (522), Expect = 4.840e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 MLLARRSIAVQRPIEYAPIRRLNRTLVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIFL 312
            MLLARRSIAVQRPIEYAPIRRLNRTLVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIFL
Sbjct:    1 MLLARRSIAVQRPIEYAPIRRLNRTLVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIFL 104
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A835Z5Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.930e-14
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:   37 PIEYAPIRRLNRTLVSFAEDACWMQFRFRKEHIQRLRRALGVP-DVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRI 306
            P+  AP    +RTL    +  C+   R R+    RL++AL +P D +V  NRS    DEAL+IFL RL+ PSRLTD+ E +GR+ TQ+SR+
Sbjct:   88 PLYLAPRVHYSRTLADLDDTQCYNWLRLRRPDFARLKKALRLPEDFIVTENRSVYPTDEALMIFLSRLTTPSRLTDLIEFWGRDHTQISRV 178
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BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A1D1UIP0_RAMVA (Uncharacterized protein n=2 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UIP0_RAMVA)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-11
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   58 RRLNRTLVSFAE---DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIF 309
            R L RT V         C   FRF  ++++RL   L +PD V L N  K  G E L + L RL+ PSRL D++E  G+EET LSR+F
Sbjct:   40 RNLPRTTVDLDNMTLKQCRENFRFEMDNLERLCTVLRIPDTVTLGNGIKCSGMEILCVVLRRLAYPSRLCDIEELHGKEETALSRMF 126
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A7M7HPI2_STRPU (DDE Tnp4 domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HPI2_STRPU)

HSP 1 Score: 67.4 bits (163), Expect = 6.300e-11
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   76 LVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIF 309
            L  F +D C   FRF+K+ I RL+ ALGVPD + LPNRS+ DG EAL + L R + P R  D+ + + R   QL   F
Sbjct:   74 LDDFNDDECRSYFRFKKDDIFRLKHALGVPDRITLPNRSRMDGLEALCLGLQRYAYPCRYGDLVKDYRRPVPQLCLAF 151
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A6J8AUR5_MYTCO (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8AUR5_MYTCO)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-10
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   94 DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRI 306
            + C   FRF K+ I+ LRRAL +P+ VV  NR+   G + L + L RL+ PSRL D++  FGR +T+LS I
Sbjct:   41 EQCRSFFRFDKDDIEILRRALRIPEKVVCSNRTTARGIDGLCVVLRRLAYPSRLEDLEYIFGRSKTELSLI 111
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A1D1V7C3_RAMVA (DDE Tnp4 domain-containing protein n=2 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1V7C3_RAMVA)

HSP 1 Score: 63.9 bits (154), Expect = 4.130e-10
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   58 RRLNRTLVSFAE---DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRIF 309
            R L RT V         C   FRF  + ++RL     +PD V L N  K  G E L + L RL+ PSRL D++E  G+EET LSR+F
Sbjct:   31 RNLPRTTVDLDNMTLKQCRENFRFEMDDLERLCTVFRIPDTVTLGNGIKCSGMEILCVVLRRLAYPSRLCDIEELHGKEETALSRMF 117
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A6J7ZWW5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J7ZWW5_MYTCO)

HSP 1 Score: 62.0 bits (149), Expect = 7.280e-10
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   94 DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRI 306
            + C   FRF K+ I+ LRRAL +P  VV  NR+   G + L + L RL+ PSRL D++  FGR +T+LS I
Sbjct:   41 EQCRSFFRFDKDDIEILRRALRIPQKVVCSNRTTARGIDGLCMVLRRLAYPSRLEDLEYLFGRSKTELSLI 111
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A7M7RHP0_STRPU (DDE Tnp4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RHP0_STRPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.410e-9
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   76 LVSFAEDACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETF 276
            L +F +D C   +RF+K+ I RL+ ALG+PD + LPNRS+ DG +AL I L R + P R  D+ + +
Sbjct:   48 LDNFNDDECTSYYRFKKDEIYRLKHALGIPDRITLPNRSRMDGLKALCIGLQRYANPCRYGDLVKVY 114
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A6J8BI25_MYTCO (DDE Tnp4 domain-containing protein n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BI25_MYTCO)

HSP 1 Score: 62.0 bits (149), Expect = 2.680e-9
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   94 DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRI 306
            + C   FRF K+ I+ LRRA+ +P+ VV  NR+   G + L + L RL+ PSRL D++  FGR +T+LS I
Sbjct:   41 EQCRSFFRFDKDDIEILRRAMRIPEKVVCSNRTTARGIDGLCMVLRRLAYPSRLEDLEYIFGRSKTELSLI 111
[Close]
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Match: A0A8B6EGH6_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EGH6_MYTGA)

HSP 1 Score: 60.8 bits (146), Expect = 3.810e-9
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   94 DACWMQFRFRKEHIQRLRRALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLSRI 306
            + C   FRF K+ I+ LRRAL +P+ VV  NR+   G + L + L RL+ P RL D++  FGR +T+LS I
Sbjct:   41 EQCRSFFRFDKDDIEILRRALRIPEKVVCSNRTTARGIDGLCMVLRRLAYPCRLEDLEYIFGRSKTELSLI 111
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161308 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJM3_9STRA4.840e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5Y2_9STRA1.930e-1445.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1D1UIP0_RAMVA1.870e-1143.68Uncharacterized protein n=2 Tax=Ramazzottius varie... [more]
A0A7M7HPI2_STRPU6.300e-1146.15DDE Tnp4 domain-containing protein n=2 Tax=Strongy... [more]
A0A6J8AUR5_MYTCO1.850e-1046.48Uncharacterized protein n=2 Tax=Mytilus TaxID=6548... [more]
A0A1D1V7C3_RAMVA4.130e-1042.53DDE Tnp4 domain-containing protein n=2 Tax=Ramazzo... [more]
A0A6J7ZWW5_MYTCO7.280e-1046.48Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A7M7RHP0_STRPU1.410e-944.78DDE Tnp4 domain-containing protein n=1 Tax=Strongy... [more]
A0A6J8BI25_MYTCO2.680e-945.07DDE Tnp4 domain-containing protein n=3 Tax=Mytilus... [more]
A0A8B6EGH6_MYTGA3.810e-945.07Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1241751..1242065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161308|e_gw1.16.286.1
DescriptionDDE superfamily endonuclease
COG categoryS
Max annot lvl33154|Opisthokonta
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
Evalue9.7e-12
Seed ortholog7668.SPU_016560-tr
Hectar predicted targeting categorymitochondrion
TranscriptId161630
TrackFilteredModels1
ProteinId161308
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161308gene_3070Tribonema minus UTEX_B_3156 geneContig_16 1241751..1242065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3070_1exon_3070_1Tribonema minus UTEX_B_3156 exonContig_16 1241751..1242065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3070CDS_3070Tribonema minus UTEX_B_3156 CDSContig_16 1241751..1242065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161308Trimin1|161308|e_gw1.16.286.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1241751..1242065 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3070 ID=mRNA_3070|Name=jgi.p|Trimin1|161308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_16:1241751..1242065- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTTGCGCGACGAAGCATTGCGGTTCAGCGCCCTATCGAGTATGC
CCCCATCCGCCGCCTCAATCGCACCCTCGTCAGCTTCGCTGAGGACGCAT
GCTGGATGCAGTTCCGATTCCGCAAAGAGCACATACAGCGGCTGAGGCGC
GCGTTGGGGGTGCCAGACGTCGTGGTGCTGCCTAATCGCAGCAAAGACGA
CGGCGACGAGGCCTTGCTCATCTTTCTCCATCGCTTGTCGCGGCCTTCAC
GGCTCACCGACGTCAAGGAAACATTCGGGAGAGAGGAGACACAGCTCAGC
AGGATCTTTCTATGA
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protein sequence of jgi.p|Trimin1|161308

>Trimin1|161308|e_gw1.16.286.1 ID=Trimin1|161308|e_gw1.16.286.1|Name=jgi.p|Trimin1|161308|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MLLARRSIAVQRPIEYAPIRRLNRTLVSFAEDACWMQFRFRKEHIQRLRR
ALGVPDVVVLPNRSKDDGDEALLIFLHRLSRPSRLTDVKETFGREETQLS
RIFL*
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mRNA from alignment at Contig_16:1241751..1242065-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3070 ID=mRNA_3070|Name=jgi.p|Trimin1|161308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_16:1241751..1242065- (Tribonema minus UTEX_B_3156 )
ATGCTTCTTGCGCGACGAAGCATTGCGGTTCAGCGCCCTATCGAGTATGC
CCCCATCCGCCGCCTCAATCGCACCCTCGTCAGCTTCGCTGAGGACGCAT
GCTGGATGCAGTTCCGATTCCGCAAAGAGCACATACAGCGGCTGAGGCGC
GCGTTGGGGGTGCCAGACGTCGTGGTGCTGCCTAATCGCAGCAAAGACGA
CGGCGACGAGGCCTTGCTCATCTTTCTCCATCGCTTGTCGCGGCCTTCAC
GGCTCACCGACGTCAAGGAAACATTCGGGAGAGAGGAGACACAGCTCAGC
AGGATCTTTCTATGA
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Coding sequence (CDS) from alignment at Contig_16:1241751..1242065-

>mRNA_3070 ID=mRNA_3070|Name=jgi.p|Trimin1|161308|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_16:1241751..1242065- (Tribonema minus UTEX_B_3156 )
ATGCTTCTTGCGCGACGAAGCATTGCGGTTCAGCGCCCTATCGAGTATGC
CCCCATCCGCCGCCTCAATCGCACCCTCGTCAGCTTCGCTGAGGACGCAT
GCTGGATGCAGTTCCGATTCCGCAAAGAGCACATACAGCGGCTGAGGCGC
GCGTTGGGGGTGCCAGACGTCGTGGTGCTGCCTAATCGCAGCAAAGACGA
CGGCGACGAGGCCTTGCTCATCTTTCTCCATCGCTTGTCGCGGCCTTCAC
GGCTCACCGACGTCAAGGAAACATTCGGGAGAGAGGAGACACAGCTCAGC
AGGATCTTTCTATGA
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