mRNA_3059 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347868
Unique Name	mRNA_3059
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347868 vs. uniprot
Match: A0A835ZGL9_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL9_9STRA)

HSP 1 Score: 507 bits (1305), Expect = 2.900e-180
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 3

Query:   36 MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC 812
            MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC
Sbjct:    1 MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSNLDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTSYLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALGTNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAFGSMFVLLRC 259

[Close]

BLAST of jgi.p|Trimin1|347868 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.530e-9
Identity = 42/117 (35.90%), Postives = 59/117 (50.43%), Query Frame = 3

Query:  552 EIYQNIGPDGTE-----------------------------AQGSVADSVRLNLAFQSSAFTPLTFLGRKVDDVLRPLKFNFPS-KLRNVGWLEHSFVDKDIRIARAFG-SMFVLLR 809
            +I+QNI  DGTE                             A  S+    RL L+F+ S ++P T LGR V   L P K +FP     N GW++ +F+D++IR+ARAFG ++FVL R
Sbjct:  162 QIFQNINEDGTEITNVVDLQPKAAPVLERFAGSTSARLEVFAAASLEGDKRLTLSFRRSQYSPQTLLGRDVSATLPPFKVSFPEIPGTNAGWIDTTFIDEEIRVARAFGGNLFVLAR 278

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347868 vs. uniprot

BLAST of jgi.p|Trimin1|347868 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZGL9_9STRA	2.900e-180	100.00	PAP_fibrillin domain-containing protein n=1 Tax=Tr...	[more]
A0A6H5KJ99_9PHAE	2.530e-9	35.90	PAP_fibrillin domain-containing protein n=2 Tax=Ec...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_16	contig	Contig_16:1202919..1207255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347868\|estExt_Genemark1.C_Ctg_160135
Description	response to acid chemical
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	28JPH@1\|root,2QS2T@2759\|Eukaryota
Evalue	7.52e-14
Seed ortholog	2880.D7FJD3
Hectar predicted targeting category	signal peptide
TranscriptId	348190
Track	FilteredModels1
ProteinId	347868

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347868	gene_3059	Tribonema minus UTEX_B_3156	gene	Contig_16 1202919..1207255 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347868	Trimin1\|347868\|estExt_Genemark1.C_Ctg_160135	Tribonema minus UTEX_B_3156	polypeptide	Contig_16 1202954..1207102 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3059_1	exon_3059_1	Tribonema minus UTEX_B_3156	exon	Contig_16 1202919..1203359 +
exon_3059_2	exon_3059_2	Tribonema minus UTEX_B_3156	exon	Contig_16 1203939..1204051 +
exon_3059_3	exon_3059_3	Tribonema minus UTEX_B_3156	exon	Contig_16 1205048..1205080 +
exon_3059_4	exon_3059_4	Tribonema minus UTEX_B_3156	exon	Contig_16 1205835..1205921 +
exon_3059_5	exon_3059_5	Tribonema minus UTEX_B_3156	exon	Contig_16 1206716..1206802 +
exon_3059_6	exon_3059_6	Tribonema minus UTEX_B_3156	exon	Contig_16 1207049..1207255 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3059	UTR5_3059	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_16 1202919..1202953 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3059	CDS_3059	Tribonema minus UTEX_B_3156	CDS	Contig_16 1202954..1203359 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3059	UTR3_3059	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_16 1207103..1207255 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_16:1202919..1207255+
coding sequence from alignment at Contig_16:1202919..1207255+

spliced messenger RNA

>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Trimin1|347868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=968bp|location=Sequence derived from alignment at Contig_16:1202919..1207255+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAAAACACACACTTGTGCAGAGGTTGCGTAGATTATGGCCCGTCCGTGC
CGGTGGACGCTGTGGGCGGCTCTTCTCTCTGTGCCCGGCAGCGCCTTTTT
CGGCAGCGTAGCAGTTCACAACACTCATCGTGGAAGGGGCTGTATTAGGC
TTGGCAGCAGTGATAATAGCGACTACCTGAGCAACCTGGATGGTGAATCA
AAGAGCGGCGCTCCTGCGGCAGACTATCTCAGCAAACTACCCAGATCGGA
TGCGGAGAAGAAAACCAGCAATGCAAACGAGTCTGATGACTACTTGACCA
AGCTGGATCAAGGCGCCCCTTCCACCCCCACCAGCTATCTGGACAATCTG
CAGGGAGATGCGGCGACGGCGACTGGTACAGTAGGCACGACTGATGCACC
GGAGAGCACTGAGCCAGCAGCTCCTGTCGCTGATAACGAAGGCTTGCAAG
GCCTCAAGGACCAACTGCTGAAAATGGCTTTGGGGACAAACCGTGGCTTT
AGCAGCCGTATGGAGGAGAGGCGTGACATTGCTGACATTGTTGCGGAGCT
GGAGATTTACCAAAACATCGGTCCCGATGGCACTGAGGCCCAGGGCAGCG
TGGCTGACTCTGTGCGGCTCAACCTGGCCTTCCAGTCATCTGCCTTTACA
CCGCTGACCTTCTTGGGCAGAAAGGTGGACGATGTCCTGAGGCCACTGAA
ATTCAATTTCCCATCCAAGCTGCGCAATGTTGGCTGGCTCGAACACAGTT
TCGTCGACAAGGATATCCGGATCGCACGTGCATTTGGCAGCATGTTTGTA
CTACTGAGGTGCTGAACAAGCATCAACCTGATGCTGAAGCGTGATTATAT
TTTCAGTGCCACAGACAGCACGTTGCACGTTGCATGTACAGCTCTCTGGA
GCATTGCTCTCGTGAAGCCTGTTGCTAAGGTAGGCAGCCTGATGAAGCTG
TTGAATTTTGAAAATCAC

protein sequence of jgi.p|Trimin1|347868

>Trimin1|347868|estExt_Genemark1.C_Ctg_160135 ID=Trimin1|347868|estExt_Genemark1.C_Ctg_160135|Name=jgi.p|Trimin1|347868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MARPCRWTLWAALLSVPGSAFFGSVAVHNTHRGRGCIRLGSSDNSDYLSN
LDGESKSGAPAADYLSKLPRSDAEKKTSNANESDDYLTKLDQGAPSTPTS
YLDNLQGDAATATGTVGTTDAPESTEPAAPVADNEGLQGLKDQLLKMALG
TNRGFSSRMEERRDIADIVAELEIYQNIGPDGTEAQGSVADSVRLNLAFQ
SSAFTPLTFLGRKVDDVLRPLKFNFPSKLRNVGWLEHSFVDKDIRIARAF
GSMFVLLRC*

mRNA from alignment at Contig_16:1202919..1207255+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Trimin1|347868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4337bp|location=Sequence derived from alignment at Contig_16:1202919..1207255+ (Tribonema minus UTEX_B_3156 )
CCAAAACACACACTTGTGCAGAGGTTGCGTAGATTATGGCCCGTCCGTGC
CGGTGGACGCTGTGGGCGGCTCTTCTCTCTGTGCCCGGCAGCGCCTTTTT
CGGCAGCGTAGCAGTTCACAACACTCATCGTGGAAGGGGCTGTATTAGGC
TTGGCAGCAGTGATAATAGCGACTACCTGAGCAACCTGGATGGTGAATCA
AAGAGCGGCGCTCCTGCGGCAGACTATCTCAGCAAACTACCCAGATCGGA
TGCGGAGAAGAAAACCAGCAATGCAAACGAGTCTGATGACTACTTGACCA
AGCTGGATCAAGGCGCCCCTTCCACCCCCACCAGCTATCTGGACAATCTG
CAGGGAGATGCGGCGACGGCGACTGGTACAGTAGGCACGACTGATGCACC
GGAGAGCACTGAGCCAGCAGCTCCTGTCGCTGATAACGAAGGTGGGTCTG
CTCACTTTAGCGTGTCGTAGCGCCAGCCCGCTTGCCATGCCCACCTGCAT
TGATGTTTTGCAGAGTTGATGTTCATGCGTGTGCAGCTGCATAATGTGTC
ATTGTCACCTTTAAAATTGTGCGACTGCCTCATGCGCCGGTGTCAGAGCA
TCAGTAATCATGCCAAATCGGCTCTGGCATCTCGAAGTCAAAGTGTGTGG
TTTCTGCAGAGCTTTGCAAGCAATGCGCAAGAGCAAGGCACAAGCAATCA
TCAATCATGCTTTGATACACTTTTGTTGTGTGCAGGCTAACCATGCTGTT
GTGCACACACATTACCCCTCACTTCAACAAGTATATGTTGAAAGATTCAG
AAAGAAGCAGCAGCAGTATCGTGCTATGAGTTGTCGACAGCGCAATGTGC
ACGCCGGGATGGCTAGCAGGATCGTGCTACATGGGTCGCACGCTTGTTGC
GTTTTTGTTTTGCAGTGTCGAAGTGCCACCTTTGCTGTTGCTGTTCCTCG
CCCAGCGGGCCTCCCTGACCACCATGTGTTGATGTGATATGGACACACTG
CTGTTGTGGACTTTGTGCAGGCTTGCAAGGCCTCAAGGACCAACTGCTGA
AAATGGCTTTGGGGACAAACCGTGGCTTTAGCAGCCGTATGGAGGAGAGG
CGTGACATTGCTGACATTGTTGCGGAGCTGGAGGTCAGCACATGGCACCA
TATTGCAGCAGGCTTGACCATGAGACGCGTGTCATTGACGTTTACTCACA
GACACTATGCCTTATTGGATCTCCATGTGCTTGGTGTGATATCAATGTCT
GATGCGTCAGCAGGTACTTCAAAAAGTTATCGCAACTATTCGAGCACGCA
TGTGGGCATGGCGGCTGTTATGAATCATACCTTATGATTGAGCTCTTTGC
AATATGTGTACATCTACATCATTTCAACTTCACTCGGTCTTGTGCATGTG
TGCACGAGGTGCTACTTCACAAGTGGACACACACTATGGACGGGTGCACT
CCAAATACCTTCGAGTGCCCGTGAATCAACGGTGACGCATGTTTACTTAC
TGGTGATTTTTGTTGCTGATTCAACATTTGGCACAGGAACTCAACCCCAA
CCCTCACCCCAATGATGGATTCCAAGATGGCAGCTCCTTACTTACTGGAG
ACTGGCAGGTCAGCGAGTATGATTAGGCCTATGACCATCATTGAAGTTTG
TAGTACAACATGTGCGACTGGGGACGCCTCTTGGTCATTATCAAGCTGGT
GAAATTTTGTGAGCATCGTTCTCTGCTCATGCTCAACTGCTGATGAAGAT
GAGGCAATGGAAGTGTTACAAATCCGCCTGCACGGCACGCTGACTTTATG
CATGCTGCGCACAGGTGTGCAACACTGAGAGCTGTGCTTACATGTAGTAA
CATTGTGCACCTTGCCTTGTATCCTCACAGCTCCTGTTTACAGATGCGCC
GGATGTTCTCAGCTTGGCGTTGCTGCCTGGCGTCACTATTGGGCAGGCAA
GTAGCTGGGCCATTTGATCACAATGAAGGCATGCAACGTGCTCAACGCAA
GTTGCTGTATGCCTTGTCAAGCCATGCATGTATGCCATGCCGTGTATACA
CTACTTGCTACTGCTGCTCGATTGTTGTTTGATTCAACGAGCCGCCTTTT
GTTCTCCATTGTGCTTGACCGCTCTGCAGATTTACCAAAACATCGGTCCC
GATGGCACTGAGGTGAGTCAAAAACAACGTCGTACACACATGCATGCACA
CACTTGCAGCGCACATGCAAATCTGAAAGGAGAGTCGAGAACAGAGCGAT
GCAATCTTCCTCCCATATGCACAGCACATGTTTTGTGAAGTACCTCATCG
AGTTCACTTTGCTGCTCTGCATTTACTTCCCCGCCACAGATTGCCAATAT
AGTGGAGCTGCAACCGCTGCTGGCTCCCATCATTCCCTCTACTGTAGCAA
GGCTGGTCGTTCAGGTGAGCGAAGTGGGCGGGAATATGCCGCAGGTGATC
AGGGCCAAAGCACACATGCCGCATGCCTTCTGCAAAGTCACGCTCGATGT
CGGCAATGCGGGGGGTCCACTGTTGCCTGCCGTGTTGGCAGTCACTCGCC
AGGGATGTCCTGGCCGGGCAGAGATGCCAGCAACAAGAAGCCATTGGCAT
CTGCACCGTGGCGTGACCCATCGGCTCTTGACGGGCCAATGATGTCTAGC
CCTGGCAGCGCCGCTTCAGTGACGGCGACCACTTTCTCTCCCCTAGTGTA
ACAGCCAGGACCGTGCAGTCAAGCACAGGCAGTGCAGCATTGTAGTTTGT
TTGAAGAATACAGGCAATGTGAGAGCGCATGGCACAGCGGTGAGCAGGCC
ACGACGGCACAAAGCAAAACATCACAAGGCACACATTCATGTATGCAATT
TGGCGGGGCAGAGACTGAATCATATGTTGCACTGCATCACAAATGTCCAT
CCTCGTCGTCGTTCAGGCCCAGGGCAGCGTGGCTGACTCTGTGCGGCTCA
ACCTGGCCTTCCAGTCATCTGCCTTTACACCGCTGACCTTCTTGGGCAGA
AAGGTGAGTAAGCATGCGCCAGCATCTGCATTTGTTATTTTTTTAACAGA
CACATGTAGTAGCATTGAAAGGGGGTGAACCATCGGGAGGTATCACAGCC
AAATCGTGACCAGATTCCAGTTGCACCTGCCAAAAAAAGCCCACCGTGCA
CACTGTTTATGGTACAAGCAGCTGTGCGAATCCCCTCCTCAGTCAGGCAT
TATGCTATGTTACAATTGCCGCATCTACTGCACTTCAGGCCAAAGACACC
ACAGACAGGACAGTTCTTCAGTTTCATGCTTTGTATGAATGAATGCCTTG
CAGCGCGGACTGTGAAGTCCACCTGGCATGCGCTCAATGTGAACATCCAG
ACACATGTTCCGGCGATGCATCATGTCTCTGTGCAAAGCAAATCTGTTGT
CGCAGTTGTGTATACAGGACGACTTCTAAAGTACAATACCAGTGCCTGGG
AAGCAGCACCCCTTTGTTGTGATTCCCATTGTGAATTGCATTCTCTTCGC
GCCCCTCCAGTAGATCGCGCATCCTGTGACTCGTGCATCCTGTAACTGTC
CAAATGCTTCAACACTCTCGTCAGTAGAGCACTATATGGCGTCAGGTGTG
TCTCTCTCTATATTTGTGTGTCCATCAAGAGTACATAAAACTGTGATGAA
ACTCTTTCAAGTGCTTTTGTAAACGAATGCTTCGATGACTTGCGCAATCG
CACCTTAAGCTTTCATCCCCAAGATAATGTTTTGAATGGCAGGCTTACAG
TATGTTTCAGTGGTTGCTCTGTGTTTGCTTCGCTTTTGTCGCCATAGGTG
GACGATGTCCTGAGGCCACTGAAATTCAATTTCCCATCCAAGCTGCGCAA
TGTTGGCTGGCTCGAACACAGTTTCGTCGACAAGGTTAGTAGTGGTTTCA
ATGCACGTAGCTGGCATCATTTGACTGGATGCGCTGTTGCTGACATCTTT
GCACGCGTGCCTGCATGTGGTGTTGATGCACTGCTACAAAGGTGGTGCTG
CATCTGCCTGAGTTTTGAATTTGCACTGTCACTGATGCACGGGCAGCTAT
GACGACATGCGAAGCACTTGCTGCTGTCAGCACACTCACATGTTGTGCAT
GTTTGTTGCTGTTGGTGTTCTGTTACGCAGGATATCCGGATCGCACGTGC
ATTTGGCAGCATGTTTGTACTACTGAGGTGCTGAACAAGCATCAACCTGA
TGCTGAAGCGTGATTATATTTTCAGTGCCACAGACAGCACGTTGCACGTT
GCATGTACAGCTCTCTGGAGCATTGCTCTCGTGAAGCCTGTTGCTAAGGT
AGGCAGCCTGATGAAGCTGTTGAATTTTGAAAATCAC

Coding sequence (CDS) from alignment at Contig_16:1202919..1207255+

>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Trimin1|347868|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_16:1202919..1207255+ (Tribonema minus UTEX_B_3156 )
ATGGCCCGTCCGTGCCGGTGGACGCTGTGGGCGGCTCTTCTCTCTGTGCC
CGGCAGCGCCTTTTTCGGCAGCGTAGCAGTTCACAACACTCATCGTGGAA
GGGGCTGTATTAGGCTTGGCAGCAGTGATAATAGCGACTACCTGAGCAAC
CTGGATGGTGAATCAAAGAGCGGCGCTCCTGCGGCAGACTATCTCAGCAA
ACTACCCAGATCGGATGCGGAGAAGAAAACCAGCAATGCAAACGAGTCTG
ATGACTACTTGACCAAGCTGGATCAAGGCGCCCCTTCCACCCCCACCAGC
TATCTGGACAATCTGCAGGGAGATGCGGCGACGGCGACTGGTACAGTAGG
CACGACTGATGCACCGGAGAGCACTGAGCCAGCAGCTCCTGTCGCTGATA
ACGAAGGCTTGCAAGGCCTCAAGGACCAACTGCTGAAAATGGCTTTGGGG
ACAAACCGTGGCTTTAGCAGCCGTATGGAGGAGAGGCGTGACATTGCTGA
CATTGTTGCGGAGCTGGAGATTTACCAAAACATCGGTCCCGATGGCACTG
AGGCCCAGGGCAGCGTGGCTGACTCTGTGCGGCTCAACCTGGCCTTCCAG
TCATCTGCCTTTACACCGCTGACCTTCTTGGGCAGAAAGGTGGACGATGT
CCTGAGGCCACTGAAATTCAATTTCCCATCCAAGCTGCGCAATGTTGGCT
GGCTCGAACACAGTTTCGTCGACAAGGATATCCGGATCGCACGTGCATTT
GGCAGCATGTTTGTACTACTGAGGTGCTGA