mRNA_3037 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A836CJL4_9STRA (Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL4_9STRA) HSP 1 Score: 456 bits (1172), Expect = 9.820e-162 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIIIV 717 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIIIV Sbjct: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIIIV 239
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A835Z7P1_9STRA (Cation/H+ exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P1_9STRA) HSP 1 Score: 334 bits (857), Expect = 1.420e-112 Identity = 170/238 (71.43%), Postives = 201/238 (84.45%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 P L TVF+P+L+FVSAW++H H+L RQIWQ+LWLAFPAV++ LTA F+KY L Y W WL CLLLG+I+S TDPVATVALLKE GVS+ LSTL+E SLFNDGSA VLF +FLGA+EG ELT G VP+ F+R+SLGG A+GFVLG AAAQ LRLIVNDA+AE+TLTLVMC+STWL+A+ TPI VSGV+AVV+MGLTL + GRPFVSPSVQ FM DFW LL+F NTV+FFVAGII+ Sbjct: 81 PTALFTVFLPVLIFVSAWSMHIHMLQRQIWQILWLAFPAVVVGTALTATFLKYVL-YDWDWLPCLLLGTIVSSTDPVATVALLKEQGVSDKLSTLIEGESLFNDGSALVLFELFLGAIEGHELTPGGVPITFVRSSLGGAALGFVLGYAAAQVLRLIVNDAVAEVTLTLVMCHSTWLLAQGTPIGVSGVMAVVLMGLTLRKQGRPFVSPSVQAFMTDFWILLDFLANTVVFFVAGIIL 317
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE) HSP 1 Score: 221 bits (562), Expect = 3.620e-65 Identity = 118/239 (49.37%), Postives = 167/239 (69.87%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIIIV 717 P++L VF PIL+FVSA+ H+L R++ Q+++LA P VI+ AGLTA F+K+ LPY W W L ++ GS+++ TDPVA VALL+ELGVSE L TL+E SL NDGSA V+F +FL AVEG +V R +LGGPAIG V+G+ A L ++NDAL E++LT+++ +ST+ + E T + VSGVL +V G+ LS +G+P VS V + DFW L+F +T IFF++G+I++ Sbjct: 98 PRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFLEAVEGHSRNWHEVIEFGARLALGGPAIGAVIGIMGAFVLGYVINDALVEVSLTVLLAFSTFALCEATRVKVSGVLGIVACGVVLSYYGKPRVSSPVLPSLMDFWKTLQFFADTTIFFLSGLIVI 336
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO) HSP 1 Score: 213 bits (543), Expect = 7.740e-60 Identity = 115/238 (48.32%), Postives = 157/238 (65.97%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 P +L VF+P L+F SA++V H+ R WQ+ LA P + I GLTAA Y PY+WSW L+ GSIL+ TDPVA VALLKELG S+ L TL+E SL NDG+A V F F G V G+E T ++ ++ SLGGP +G + + AL + NDA++EIT+T+V CYS +++AE T +H SGVLAVV +G+ +S G+ VSP V+ M FW +L + +NTVIF ++G+II Sbjct: 90 PHTILVVFLPTLIFESAFSVDFHIFRRSFWQLFILAVPGMAIGTGLTAAVGVYLFPYQWSWEASLMFGSILAATDPVAVVALLKELGASKQLETLIEGESLLNDGTAIVAFTAFRGMVLGEEKTIEELVGFGLQLSLGGPLLGAIFAAISIVALSYLYNDAVSEITVTVVGCYSVFMIAEATMLHTSGVLAVVTLGVLMSGFGKVHVSPEVEHAMHGFWEMLSYFSNTVIFLLSGVII 327
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 208 bits (529), Expect = 2.170e-59 Identity = 112/238 (47.06%), Postives = 160/238 (67.23%), Query Frame = 1 Query: 4 QVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEG-DELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 Q++L VF+PIL+F SA+ H+ R+ WQV+ LA P V I+ +TA+ VKY PY W W L L+LG ILS TDPVA VALLK+LGVSE L+ L+E SL ND + V+F++F A G + + V V +R S GGP +G LG+ + L I++DA+ EIT+T+++C+S+++++E T +HVSGVLA V GL +S + +SP V+ M FW++ + NTVIFFV+G+II Sbjct: 11 QIILFVFLPILIFESAFETDVHIFQREFWQVVTLAGPGVAIATIITASIVKYVFPYGWDWNLSLMLGGILSATDPVAVVALLKDLGVSERLNVLIEGESLLNDATGIVVFIVFRDAFVGVADSSPAQVLVTAVRMSFGGPMVGLALGMFGSFLLGYIIDDAMTEITVTVIVCFSSFIISEATTLHVSGVLAAVTAGLVMSFYAGGRISPGVEHSMHTFWSMATYVANTVIFFVSGLII 248
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 209 bits (533), Expect = 2.830e-59 Identity = 112/236 (47.46%), Postives = 158/236 (66.95%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTA-GDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAG 705 P+++ +PIL+F SA+ H+ R++WQVL LA P V+ + + A F KY PY W W CL G++ S TDPVA VAL+KELGVSE L+ L+E SL NDG++ V+F +F A G T+ G V F+R LGGPA+GF G+ + A+ I+ D L+EIT T+V+C+S +L+AE T + VSG+L+VV+ GL +S +GRP +SPSVQ + +FW+L + NTVIFF+ G Sbjct: 114 PEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVFFDASTGIGSTSVGHVVAQFVRLGLGGPAVGFFTGMIGSFAIGYILEDHLSEITCTVVVCFSAFLLAEATILRVSGILSVVIAGLYMSFYGRPRISPSVQESLREFWSLWGYMANTVIFFLTG 349
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.960e-57 Identity = 111/229 (48.47%), Postives = 150/229 (65.50%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDE-----LTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEF 672 P+V+L FIPIL+F S+++ H++ + QVL+LA P VI+S LTA FVKY Y WSW LCLL GS++S TDPVA VAL K+LGV++ L TL+E L NDGSA V+F + L A+E L+AGDV ++ SLGGP +G VL +ND +E+TLT+V CY+ +LVAE + +HVSGVLAVV GL LS +GR +S V+ + FW++ E+ Sbjct: 133 PEVILFAFIPILLFESSFSTDVHIIRHEALQVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLGVNQRLGTLIEGEGLMNDGSAIVIFNICLAAIEKRRTNNAGLSAGDVVTTALQLSLGGPVVGLVLXXXXXXXXXXXINDLKSEVTLTVVGCYACFLVAEGSKLHVSGVLAVVFAGLYLSFYGRGKISIKVEHSLHSFWHIAEY 361
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A8J9RDR6_9CHLO (Sodium/hydrogen exchanger 7 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RDR6_9CHLO) HSP 1 Score: 201 bits (511), Expect = 1.550e-55 Identity = 111/238 (46.64%), Postives = 154/238 (64.71%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 P +LLT F+PIL+F A+ + H + R +W L LA P V++ LTA VKY PY WSW+ LL G++ S TDPVA VA+LKE G+S+ L TLV++ +L NDG+AF LFL+ G EG ELTA D F++ ++GGP G G+A LR + N +AEITLT+V Y T++VA+ +HVS VLAVV++G+ +S G +S V+ + W LEF NT+IF ++G+II Sbjct: 84 PTLLLTAFLPILLFAGAFALEWHTVRRLMWSSLLLAGPGVLVGTALTAVLVKYTFPYDWSWVESLLFGAMFSATDPVAVVAVLKEAGLSKRLRTLVDSEALLNDGTAFTLFLLLKGFTEGQELTAADTVREFVQLAVGGPLAGLAFGIATTFWLRFMYNTPMAEITLTIVSAYGTYIVADEL-MHVSAVLAVVILGIYMSAKGVMAISRKVEHPLHIIWEELEFLANTLIFVLSGVII 320
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: C3Z1F9_BRAFL (Cyclic nucleotide-binding domain-containing protein n=6 Tax=Branchiostoma TaxID=7737 RepID=C3Z1F9_BRAFL) HSP 1 Score: 194 bits (493), Expect = 3.900e-53 Identity = 106/238 (44.54%), Postives = 150/238 (63.03%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLGAVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 P +L VF+P+L+F SA+ + H+ W+ I+Q+L +A P +++++ LT Y Y W+W + ++ GSI S TDPVA VALLKELG S+ L T++E SL NDG V+F MFL G E A D + ++ LGGPA GFV+ + L I NDAL EIT+TL Y T+ VAE + VSGVLAVV++GLT+ R +SP V+ F+ FW ++ + NTVIF + G++I Sbjct: 106 PHLLFHVFLPVLIFESAFAMDTHMFWKSIYQILIMALPGLLLASLLTGILSMYTFNYGWNWYVGMMFGSICSATDPVAVVALLKELGASKQLGTVIEGESLLNDGCGIVIFTMFLNLATGVEWAAADFVIFIVKVMLGGPAFGFVMSKLTSFWLANIFNDALTEITITLASTYITFYVAEV--LGVSGVLAVVILGLTMERTS---ISPEVESFLHRFWEMMAYLANTVIFILVGVMI 338
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Match: A0A8J1Y2V3_OWEFU (Ofus.G13166 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y2V3_OWEFU) HSP 1 Score: 187 bits (474), Expect = 1.390e-50 Identity = 106/239 (44.35%), Postives = 148/239 (61.92%), Query Frame = 1 Query: 1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFLG-AVEGDELTAGDVPVMFIRASLGGPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 714 P LL VF+P+LVF SA+ + H + Q++ LA P + I+ GLT F + Y W+W ++ GSILS TDPVA VALLK+LG S+ L TL+E SL NDG+A VLF +FL A G + ++ F++ +LGGPA G V+G L I NDAL EIT+TL Y T+ + E + VSGVLAVVV+G+ +S + +SP V+ F+ FW +L + NT+IF + G++I Sbjct: 75 PHTLLNVFLPVLVFESAFAMEAHTFLKSFVQIVILAIPGLAIATGLTGLFAMFVFTYEWTWTESMMFGSILSATDPVAVVALLKDLGASKQLGTLIEGESLLNDGAAIVLFKVFLKLATPGMTMAGHEILFEFLQVALGGPAFGLVMGKLTTYWLSKIFNDALTEITITLASTYVTYYIGEQF-LKVSGVLAVVVLGVIVSAE-KTSISPEVEAFLHRFWEMLAYLANTLIFILVGVVI 311 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161388 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3037 ID=mRNA_3037|Name=jgi.p|Trimin1|161388|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=720bp|location=Sequence derived from alignment at Contig_16:1044345..1047067- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGCAGGTGCTGCTGACGGTGTTCATCCCCATTCTGGTGTTTGTCAGCGCback to top protein sequence of jgi.p|Trimin1|161388 >Trimin1|161388|e_gw1.16.258.1 ID=Trimin1|161388|e_gw1.16.258.1|Name=jgi.p|Trimin1|161388|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFback to top mRNA from alignment at Contig_16:1044345..1047067- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3037 ID=mRNA_3037|Name=jgi.p|Trimin1|161388|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2723bp|location=Sequence derived from alignment at Contig_16:1044345..1047067- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:1044345..1047067- >mRNA_3037 ID=mRNA_3037|Name=jgi.p|Trimin1|161388|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=720bp|location=Sequence derived from alignment at Contig_16:1044345..1047067- (Tribonema minus UTEX_B_3156 )back to top |