mRNA_297 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157547
Unique NamemRNA_297
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA)

HSP 1 Score: 589 bits (1519), Expect = 1.640e-211
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 1 
Query:    1 MVSGASSAPAPALSVPPEASSVAXXXXXXXXXXXXXXXXXXXXAPAGEDAAAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDAGGEGGSAKAAK 996
            MVSGASSAPAPALSVPPEASSVAXXXXXXXXXXXXXXXXXXXXAPAGEDAAAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDAGGEGGSAKAAK
Sbjct:    1 MVSGASSAPAPALSVPPEASSVAXXXXXXXXXXXXXXXXXXXXAPAGEDAAAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDAGGEGGSAKAAK 332
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA)

HSP 1 Score: 420 bits (1079), Expect = 7.040e-145
Identity = 210/284 (73.94%), Postives = 245/284 (86.27%), Query Frame = 1 
Query:  130 APAGEDAAAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDE---VVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDAGGE 972
            A A E  A A+A P++  VPEG +VCMRTHHTQQWRTL DALKDLI ESPVTFG +GMKL+SMDPAHVAL+NLQ+ SE YYCKRE TVGLNVAALY+MLRNLTTGGY+LE++L E DPDHL +L++NE+KRTRTSNR KLLRLP+EIITIPP VFQRVLSIPSADFQRYIRELSGVSNKI IRST+D+L+LSA GT G+TEIE+RPTASGMHWQ I+S A+DE    VEGV+ ++Y+ERF+RPLD VVEIF++ AYPLVLRY +  A VRLVIAQC  ++ GG+
Sbjct:   26 AAAEEPNADALALPSEPEVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEGGGD 309
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A836CPH7_9STRA (PCNA_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPH7_9STRA)

HSP 1 Score: 326 bits (836), Expect = 1.910e-106
Identity = 174/289 (60.21%), Postives = 208/289 (71.97%), Query Frame = 1 
Query:  175 DEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFID----------------------------SEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDD 957
            DE VP G LV +RT H+QQWRTL DALKDL+ E PVTFG  G+KLVSMDP  +AL+          C   + VGLNVAALY+MLRNLTTGGYILELS+ E  PD + V++SN +KR RT +  KLLRLP+EIITIPPAVFQRVLSIPSADFQRY+RELSGVSN+I++RS+RD L LSA G +G TEIEIRPTASGMHWQFI+                            +   D  ++GVF S+Y+ERF+RPLDS+VEIF+K+ YPLVLRY +Q   VRLV+AQC D+
Sbjct:  118 DEDVPLGTLVLLRTSHSQQWRTLADALKDLVPECPVTFGADGLKLVSMDPGMIALI----------CW--LMVGLNVAALYRMLRNLTTGGYILELSIHESTPDRMSVVVSNGEKRVRTCHSLKLLRLPEEIITIPPAVFQRVLSIPSADFQRYVRELSGVSNRIRVRSSRDRLTLSATGVAGLTEIEIRPTASGMHWQFIEPXXXXXXXXXADDAPEXXXXXXXGASPPAAVEDPGIDGVFLSKYLERFSRPLDSIVEIFLKRDYPLVLRYTMQTTVVRLVVAQCEDE 394
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.960e-105
Identity = 165/267 (61.80%), Postives = 204/267 (76.40%), Query Frame = 1 
Query:  175 DEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDE-----VVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDD 960
            D+  P+ IL CMR+  T QWR L D LKDLI+E P++F   GMKL+S+DP  VAL++LQ +SE YYCK EITVG+N+ ALYKMLRNLTTGGY+LE S+S  + D L + + N DKRT TSN+ KLL+LP E + IP   FQRVLSIPSAD QR++REL+ +SNKIKI+ST D L+LSAEGT GS+EI IRPTASGMHW  ID+    E     VVEGV++S+++ERF+RPLD + EIF+KQ YPLVLRY L  ATVRLVIA   +D+
Sbjct:   29 DDLDPDCIL-CMRSSQTSQWRLLVDFLKDLITECPISFSQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDE 294
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA)

HSP 1 Score: 308 bits (788), Expect = 7.350e-101
Identity = 156/249 (62.65%), Postives = 193/249 (77.51%), Query Frame = 1 
Query:  229 QWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDE-----VVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDD 960
            QWR L D LKDLI+E P++F   GMKL+S+DP  VAL++LQ +SE YYCK EIT+G+N+ ALYKMLRNLTTGGY+LE S+S  + D L + + N DKRT TSN+ KLL+LP E + IP   FQRVLSIPSAD QR++REL+ +SNKIKI+ST D L+LSAEGT GS+EI IRPTASGMHW  ID+    E     VVEGV++S+++ERF+RPLD + EIF+KQ YPLVLRY L  ATVRLVIA   +D+
Sbjct:   48 QWRLLVDFLKDLITECPISFNQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDE 296
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.340e-92
Identity = 135/259 (52.12%), Postives = 190/259 (73.36%), Query Frame = 1 
Query:  184 VPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDD 960
            +P   ++ MR+  T QWR++ D +KD+ +E P  F   G+ ++++DP  +AL++++  +E YYCK  + VG+NV  LY++LRNLT+ GY+LE+S+ +++ D + V I+N DKR+   N+ KLLRLPDE+ITIP   F RVLSIPS+D QRYIRELS +S+KI + STRD L LSA+G  GS+EI +RPT+SG+H+ F D+E  DEVV   FYSRY+E+  RP+DS  E+F+K+ YPLVLRY L  AT+R+VIA   DDD
Sbjct:   21 LPADCILMMRSTQTSQWRSIFDFVKDVTTEVPFKFDTEGLSIITLDPLKIALISVRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKHDEVVSARFYSRYLEKLCRPIDSSTEVFLKKGYPLVLRYNLATATIRVVIAPVNDDD 279
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC)

HSP 1 Score: 188 bits (478), Expect = 2.360e-54
Identity = 104/256 (40.62%), Postives = 169/256 (66.02%), Query Frame = 1 
Query:  196 ILVCMRTHHTQQWRTLTDALKDLISESPVTF-GPAGMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARP-LDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 954
            ++  MRT    Q+++L + LK+L+++  + F    G++LVS+DP  VA+V+L + S E++Y K  +T G+N+A LY+M+R+L++G Y +E  + ED+P  + + + N D+RTRT +  KLL L +  I+IP   + RV+S+PS++  +++RE+  VSN + +R TR  L   AEG   S+ I I PTASG++W+F  SE   ++ EG F  RY+E+F R  +++ VE+F+K  +PL+LRY+L   T+R VIA   D
Sbjct:   35 LIFLMRTSQCAQFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDY-MEWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNWKF--SEDVGDI-EGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIAPVKD 286
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC)

HSP 1 Score: 184 bits (466), Expect = 8.710e-53
Identity = 99/256 (38.67%), Postives = 167/256 (65.23%), Query Frame = 1 
Query:  196 ILVCMRTHHTQQWRTLTDALKDLISESPVTF-GPAGMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARP-LDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 954
            ++  +RT  + Q++ L + LK+L+++  + F    G++LVS+DP  VA+V+L I S E++Y +  +T GLN++ LY+M+R LT+G   +E  + EDDP  + + + N D+RTRT +  KLL L +  I+IP   + R++S+PS++  +++RE+  VSN + +R+T+  L   AEG   ++ I I PTASG++W++ D       +EG F  RY+E+F R  +++ VE+F+K+ +PL+LRY+L   T+R VIA   D
Sbjct:   15 LIALLRTSQSTQFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDS-MEWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKYSDDVVG--TIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIAPVKD 267
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.410e-49
Identity = 98/267 (36.70%), Postives = 168/267 (62.92%), Query Frame = 1 
Query:  169 PTDEAVPEG--ILVCMRTHHTQQWRTLTDALKDLISESPVTFGPA-GMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSV-VEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 954
            PT++   +G  +++ M+T    Q+++L + LK+L+ E  + F    G++LVS+DP  VA+++L + + E +Y K  +T GLNV  LYKM+R++T+  + +E  + ED+P  + + +SN ++RT+T    KLL L  E I IP   F RV+S+PS++  +++RE+  VS  I IR+T+  L L +EG    + I I PTASG++W+  +     E +EG +++RY+E+F +   ++ VE+F+K  YPL+LR+++    +R  IA   D
Sbjct:   16 PTEQPSYKGRPLVLMMQTSQCLQFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDF-MEWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEK---GEDIEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIAPIQD 278
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BLAST of jgi.p|Trimin1|157547 vs. uniprot
Match: A0A6C0F6B6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F6B6_9ZZZZ)

HSP 1 Score: 152 bits (384), Expect = 1.210e-40
Identity = 78/243 (32.10%), Postives = 154/243 (63.37%), Query Frame = 1 
Query:  199 LVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQS---EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFAR--PLDSVVEIFIKQAYPLVLRYQL 912
            L+ ++T  +  +R L +ALK++++++ + F P G+K+++ D +   L+++++++   EHYYC  +  +GLN+  LYK+++ +     IL +++ +  P+ + + I+N +K+++T  R  LL LP   I+IPPA F+  L++PS+DFQ+ IR+++ + +KI+I+S+ + L+LS EG     E  +  T +G+   F      +E ++GVF  +Y+  F +   L +++ ++IK  YPLV+RY +
Sbjct:    7 LLVVKTVQSGAFRVLVEALKEILTDTNLIFEPTGIKMMATDNSDTVLIHMKLEADKFEHYYCPEKTVIGLNMNNLYKLIKTMGNND-ILTMAIPKMSPNRISIKINNMEKQSQTIFRLNLLDLPHPEISIPPAKFETELTLPSSDFQKLIRDMTNIGDKIEIKSSGENLILSCEGDFAEQETVLSETQNGL--SFSVKSKPEEPIQGVFSLKYLSLFTKCTNLCNLIHLYIKNDYPLVIRYDV 246
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157547 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX88_9STRA1.640e-211100.00Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z117_9STRA7.040e-14573.94Proliferating cell nuclear antigen n=3 Tax=Tribone... [more]
A0A836CPH7_9STRA1.910e-10660.21PCNA_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A836CHQ2_9STRA1.960e-10561.80Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z7L8_9STRA7.350e-10162.65Proliferating cell nuclear antigen n=2 Tax=Tribone... [more]
A0A835Z2Q5_9STRA3.340e-9252.12Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
B5LWG9_9PHYC2.360e-5440.63Putative PCNA n=1 Tax=Feldmannia species virus Tax... [more]
Q6XM81_9PHYC8.710e-5338.67FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPF8_ECTSI2.410e-4936.70Proliferating cell nuclear antigen n=2 Tax=root Ta... [more]
A0A6C0F6B6_9ZZZZ1.210e-4032.10Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:889463..890461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157547|e_gw1.3.462.1
BRITEko00000,ko00001,ko00002,ko03032,ko03400
KEGG ModuleM00295
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG koko:K04802
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000280,GO:0000700,GO:0000701,GO:0000710,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006275,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030337,GO:0030466,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032268,GO:0032270,GO:0032404,GO:0032405,GO:0032446,GO:0032502,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034085,GO:0034087,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035556,GO:0035753,GO:0035861,GO:0036211,GO:0040029,GO:0042176,GO:0042276,GO:0042592,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0043626,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044877,GO:0045005,GO:0045732,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070557,GO:0070647,GO:0070914,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0090329,GO:0090734,GO:0097159,GO:0098772,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902392,GO:1902394,GO:1902400,GO:1902402,GO:1902403,GO:1902679,GO:1902806,GO:1902807,GO:1902969,GO:1902983,GO:1902990,GO:1903021,GO:1903022,GO:1903046,GO:1903047,GO:1903362,GO:1903364,GO:1903459,GO:1903460,GO:1903506,GO:1903507,GO:1905777,GO:1905779,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2001020,GO:2001022,GO:2001141
Preferred namePCNA
DescriptionDNA polymerase processivity factor activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0592@1|root,KOG1636@2759|Eukaryota
Evalue3.95e-50
Seed ortholog2880.D8LPF8
Hectar predicted targeting categoryother localisation
TranscriptId157869
TrackFilteredModels1
ProteinId157547
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157547gene_297Tribonema minus UTEX_B_3156 geneContig_3 889463..890461 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_297_1exon_297_1Tribonema minus UTEX_B_3156 exonContig_3 889463..890461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_297CDS_297Tribonema minus UTEX_B_3156 CDSContig_3 889463..890461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157547Trimin1|157547|e_gw1.3.462.1Tribonema minus UTEX_B_3156 polypeptideContig_3 889463..890461 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_297 ID=mRNA_297|Name=jgi.p|Trimin1|157547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_3:889463..890461- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGTGGCGCGTCCTCCGCCCCCGCCCCCGCGCTCTCAGTGCCGCC
CGAGGCTTCGTCCGTAGCAGCGCCGGCACCGCCGGCGAATCCCGCGCCTC
GGGCCGAAGTCGTCGATCCTCCCGCCCCTGCGCCGGCGGGTGAGGACGCT
GCAGCGGCCGTCGCCTGCCCCACAGACGAGGCCGTGCCCGAGGGCATTCT
GGTCTGCATGAGGACGCACCACACTCAGCAGTGGAGGACCCTGACGGATG
CGCTCAAGGACCTCATCAGCGAGTCGCCCGTCACCTTCGGTCCCGCGGGG
ATGAAGCTCGTGTCGATGGACCCCGCCCACGTCGCGCTCGTGAACCTCCA
GATCCAGAGCGAGCACTACTATTGCAAGCGGGAGATCACCGTGGGACTCA
ACGTGGCCGCCCTGTACAAGATGCTGCGCAACCTCACCACGGGTGGCTAC
ATCCTCGAGCTCAGCCTCAGCGAGGACGACCCCGACCACCTGCGCGTGCT
GATCAGCAACGAGGACAAGCGCACGAGGACCAGCAACAGGCCCAAGCTGC
TGCGCCTGCCTGACGAGATCATCACCATCCCCCCCGCGGTGTTCCAGAGG
GTGCTGTCCATCCCTTCCGCGGACTTCCAGCGGTACATCCGCGAGCTCAG
CGGCGTCTCCAACAAGATCAAGATACGCTCCACCCGCGATGTCCTCGTGC
TCAGCGCGGAGGGGACGTCGGGGTCCACGGAGATCGAGATCAGGCCCACC
GCCAGCGGGATGCACTGGCAGTTCATCGACTCGGAGGCCACGGACGAGGT
CGTCGAGGGCGTCTTCTACTCCCGCTACGTCGAGAGGTTCGCGAGGCCAC
TGGACTCCGTCGTCGAGATCTTCATCAAGCAGGCGTATCCGCTGGTGCTC
CGGTACCAGCTGCAGGCCGCGACCGTGCGGCTCGTGATCGCGCAGTGCAC
GGACGACGACGCGGGCGGAGAGGGCGGCAGCGCGAAAGCGGCCAAGTGA
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protein sequence of jgi.p|Trimin1|157547

>Trimin1|157547|e_gw1.3.462.1 ID=Trimin1|157547|e_gw1.3.462.1|Name=jgi.p|Trimin1|157547|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp
MVSGASSAPAPALSVPPEASSVAAPAPPANPAPRAEVVDPPAPAPAGEDA
AAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAG
MKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGY
ILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQR
VLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPT
ASGMHWQFIDSEATDEVVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVL
RYQLQAATVRLVIAQCTDDDAGGEGGSAKAAK*
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mRNA from alignment at Contig_3:889463..890461-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_297 ID=mRNA_297|Name=jgi.p|Trimin1|157547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_3:889463..890461- (Tribonema minus UTEX_B_3156 )
ATGGTCAGTGGCGCGTCCTCCGCCCCCGCCCCCGCGCTCTCAGTGCCGCC
CGAGGCTTCGTCCGTAGCAGCGCCGGCACCGCCGGCGAATCCCGCGCCTC
GGGCCGAAGTCGTCGATCCTCCCGCCCCTGCGCCGGCGGGTGAGGACGCT
GCAGCGGCCGTCGCCTGCCCCACAGACGAGGCCGTGCCCGAGGGCATTCT
GGTCTGCATGAGGACGCACCACACTCAGCAGTGGAGGACCCTGACGGATG
CGCTCAAGGACCTCATCAGCGAGTCGCCCGTCACCTTCGGTCCCGCGGGG
ATGAAGCTCGTGTCGATGGACCCCGCCCACGTCGCGCTCGTGAACCTCCA
GATCCAGAGCGAGCACTACTATTGCAAGCGGGAGATCACCGTGGGACTCA
ACGTGGCCGCCCTGTACAAGATGCTGCGCAACCTCACCACGGGTGGCTAC
ATCCTCGAGCTCAGCCTCAGCGAGGACGACCCCGACCACCTGCGCGTGCT
GATCAGCAACGAGGACAAGCGCACGAGGACCAGCAACAGGCCCAAGCTGC
TGCGCCTGCCTGACGAGATCATCACCATCCCCCCCGCGGTGTTCCAGAGG
GTGCTGTCCATCCCTTCCGCGGACTTCCAGCGGTACATCCGCGAGCTCAG
CGGCGTCTCCAACAAGATCAAGATACGCTCCACCCGCGATGTCCTCGTGC
TCAGCGCGGAGGGGACGTCGGGGTCCACGGAGATCGAGATCAGGCCCACC
GCCAGCGGGATGCACTGGCAGTTCATCGACTCGGAGGCCACGGACGAGGT
CGTCGAGGGCGTCTTCTACTCCCGCTACGTCGAGAGGTTCGCGAGGCCAC
TGGACTCCGTCGTCGAGATCTTCATCAAGCAGGCGTATCCGCTGGTGCTC
CGGTACCAGCTGCAGGCCGCGACCGTGCGGCTCGTGATCGCGCAGTGCAC
GGACGACGACGCGGGCGGAGAGGGCGGCAGCGCGAAAGCGGCCAAGTGA
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Coding sequence (CDS) from alignment at Contig_3:889463..890461-

>mRNA_297 ID=mRNA_297|Name=jgi.p|Trimin1|157547|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_3:889463..890461- (Tribonema minus UTEX_B_3156 )
ATGGTCAGTGGCGCGTCCTCCGCCCCCGCCCCCGCGCTCTCAGTGCCGCC
CGAGGCTTCGTCCGTAGCAGCGCCGGCACCGCCGGCGAATCCCGCGCCTC
GGGCCGAAGTCGTCGATCCTCCCGCCCCTGCGCCGGCGGGTGAGGACGCT
GCAGCGGCCGTCGCCTGCCCCACAGACGAGGCCGTGCCCGAGGGCATTCT
GGTCTGCATGAGGACGCACCACACTCAGCAGTGGAGGACCCTGACGGATG
CGCTCAAGGACCTCATCAGCGAGTCGCCCGTCACCTTCGGTCCCGCGGGG
ATGAAGCTCGTGTCGATGGACCCCGCCCACGTCGCGCTCGTGAACCTCCA
GATCCAGAGCGAGCACTACTATTGCAAGCGGGAGATCACCGTGGGACTCA
ACGTGGCCGCCCTGTACAAGATGCTGCGCAACCTCACCACGGGTGGCTAC
ATCCTCGAGCTCAGCCTCAGCGAGGACGACCCCGACCACCTGCGCGTGCT
GATCAGCAACGAGGACAAGCGCACGAGGACCAGCAACAGGCCCAAGCTGC
TGCGCCTGCCTGACGAGATCATCACCATCCCCCCCGCGGTGTTCCAGAGG
GTGCTGTCCATCCCTTCCGCGGACTTCCAGCGGTACATCCGCGAGCTCAG
CGGCGTCTCCAACAAGATCAAGATACGCTCCACCCGCGATGTCCTCGTGC
TCAGCGCGGAGGGGACGTCGGGGTCCACGGAGATCGAGATCAGGCCCACC
GCCAGCGGGATGCACTGGCAGTTCATCGACTCGGAGGCCACGGACGAGGT
CGTCGAGGGCGTCTTCTACTCCCGCTACGTCGAGAGGTTCGCGAGGCCAC
TGGACTCCGTCGTCGAGATCTTCATCAAGCAGGCGTATCCGCTGGTGCTC
CGGTACCAGCTGCAGGCCGCGACCGTGCGGCTCGTGATCGCGCAGTGCAC
GGACGACGACGCGGGCGGAGAGGGCGGCAGCGCGAAAGCGGCCAAGTGA
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