mRNA_2958 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161240
Unique NamemRNA_2958
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A836CM64_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM64_9STRA)

HSP 1 Score: 545 bits (1404), Expect = 9.950e-196
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1 
Query:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQVREASDLSFSNMKGDGIWQVNAAQLPRRACLTTWVA 840
            VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQVREASDLSFSNMKGDGIWQVNAAQLPRRACLTTWVA
Sbjct:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQVREASDLSFSNMKGDGIWQVNAAQLPRRACLTTWVA 280
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A7S4DDG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDG9_HETAK)

HSP 1 Score: 328 bits (840), Expect = 1.360e-108
Identity = 173/247 (70.04%), Postives = 196/247 (79.35%), Query Frame = 1 
Query:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLE---AGALEALEEGAQAAAAAAFTGADLQ 732
            V Q D+  A  GF P A A+ARL A S   W DVGGL   +  LR LLELP RYRRL   AP RLPTGA+++GPPGCGKTLLAGA A ECGLNF+SVKGPEVLDKYIGASEQAVR LFA A AAAP +LFFDEFEA+APRRG DNTGVTDRVVNQLLTFLDGVEG AGVY LAATSRPD++DPALLRPGRLDRQ+YCGFP A+ERL+I++A+ + + L+     A +ALEE A ++    FTGADLQ
Sbjct:   20 VVQEDLDKAFKGFVPAAAASARLAA-SAVAWADVGGLREAKEGLRGLLELPARYRRLYARAPVRLPTGAIIFGPPGCGKTLLAGAVARECGLNFISVKGPEVLDKYIGASEQAVRELFANAAAAAPSVLFFDEFEAVAPRRGGDNTGVTDRVVNQLLTFLDGVEGRAGVYCLAATSRPDLVDPALLRPGRLDRQIYCGFPEAEERLDILKALTRKMVLDDDDGTASKALEEIALSSQCTNFTGADLQ 265
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A6H5L6R6_9PHAE (Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R6_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 2.340e-101
Identity = 178/242 (73.55%), Postives = 199/242 (82.23%), Query Frame = 1 
Query:   13 DITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAK--PLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            D+ AAL+GF+ E+L  A L   S   WGDVGGL  VR+ LR++LELPV+Y RL E  P RLPTGALLYGPPGCGKTLLAGA AAECGLNF+SVKGPEVLDKYIGASEQAVR LFARA +AAPC+LFFDEFEA+APRRG+DNTGVTDRVVNQLLTFLDGVEG  GVYVL ATSRPD++D ALLRPGRLDRQLYCGFP A ER +I+RA+ +  P+S EA    AL   A +  AAAFTGADLQ
Sbjct:  994 DLEAALEGFSAESLRGAGLFRSSVE-WGDVGGLREVRSELREILELPVKYGRLFEATPTRLPTGALLYGPPGCGKTLLAGAVAAECGLNFISVKGPEVLDKYIGASEQAVRSLFARAASAAPCVLFFDEFEAVAPRRGNDNTGVTDRVVNQLLTFLDGVEGRDGVYVLGATSRPDLIDSALLRPGRLDRQLYCGFPDAAEREDILRAVCRRTPMSREAREF-ALAGVATSPKAAAFTGADLQ 1233
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A3F2RL18_9STRA (AAA domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RL18_9STRA)

HSP 1 Score: 308 bits (790), Expect = 1.900e-100
Identity = 159/244 (65.16%), Postives = 188/244 (77.05%), Query Frame = 1 
Query:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            V Q+D    ++ F P AL    L   S + W DVGGL  VR  L+D LELP RY +L +  P +LP G LLYGPPGCGKTLLA A A ECGLNF+SVKGPEVL+KYIGASEQA+R LFARA +AAP +LF DEF+++APRRG+DNTGVTDR+VNQLLTFLDGVE   GVYVLAATSRPDM+DPALLRPGRLD+ LYCGFPS +ERL+I+RA++K + L   ALE L + A A  +  F+GADLQ
Sbjct:   80 VQQSDFVEGIEDFQPTALIGVDLFKSSIK-WSDVGGLQQVRTVLKDTLELPTRYAKLYDNTPIKLPAGMLLYGPPGCGKTLLASAVAHECGLNFISVKGPEVLNKYIGASEQAIRDLFARAGSAAPSVLFLDEFDSIAPRRGADNTGVTDRLVNQLLTFLDGVEARKGVYVLAATSRPDMIDPALLRPGRLDKSLYCGFPSEEERLDILRAVSKDMELSEEALECLPKIASAPKSVYFSGADLQ 322
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: W7TM05_9STRA (Peroxisome biogenesis n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM05_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.510e-99
Identity = 163/240 (67.92%), Postives = 190/240 (79.17%), Query Frame = 1 
Query:   13 DITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            D+T AL+GF+  +   ARL++ S   W DVGGL  ++  +R++LE+PV++  L    P RLPTG LL+GPPGCGKTLLAGA A ECGLNF+S+KGPEVLDK+IGASEQAVR LFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEG  GVYV+ ATSRPD++D ALLRPGRLDRQLY GFP A E L I++A+ + +SL   A  ALE+ A A  A   TGAD Q
Sbjct:  213 DVTDALEGFSAASHRNARLSS-SGTSWADVGGLEEIKNEVREILEMPVKFAPLYARLPTRLPTGLLLHGPPGCGKTLLAGAVARECGLNFISIKGPEVLDKFIGASEQAVRALFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGRTGVYVMGATSRPDLVDSALLRPGRLDRQLYLGFPDAGESLGILKALVRKMSLTPQATAALEKVALADGADLMTGADWQ 451
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: D7FVI2_ECTSI (Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI2_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 9.660e-99
Identity = 162/207 (78.26%), Postives = 180/207 (86.96%), Query Frame = 1 
Query:   13 DITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRA 633
            D+ AAL+GF+ E+L  A L   S   WGDVGGL+GVR+ LR++LELPV+Y RL E  P RLPTGALLYGPPGCGKTLLAGA AAECGLNF+SVKGPEVLDKYIGASEQAVR LFARA +AAPC+LFFDEFEA+APRRG+DNTGVTDRVVNQLLTFLDGVEG  GVYVL ATSRPD++D ALLRPGRLDRQLYCGFP A ER +I+RA
Sbjct: 1006 DLEAALEGFSAESLRGAGLFRSSVE-WGDVGGLSGVRSELREILELPVKYGRLFEATPTRLPTGALLYGPPGCGKTLLAGAVAAECGLNFISVKGPEVLDKYIGASEQAVRSLFARAASAAPCVLFFDEFEAVAPRRGNDNTGVTDRVVNQLLTFLDGVEGRDGVYVLGATSRPDLIDSALLRPGRLDRQLYCGFPDAAEREDILRA 1211
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A421F2X5_9STRA (Peroxin-1 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2X5_9STRA)

HSP 1 Score: 310 bits (794), Expect = 3.920e-98
Identity = 160/244 (65.57%), Postives = 188/244 (77.05%), Query Frame = 1 
Query:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            V Q+D    ++ F P AL    L   S + W DVGGL  VR  L+D LELP RY +L +  P +LP G LLYGPPGCGKTLLA A A ECGLNF+SVKGPEVL+KYIGASEQA+R LFARA +AAP +LF DEF+++APRRG+DNTGVTDR+VNQLLTFLDGVE   GVYVLAATSRPDM+DPALLRPGRLD+ LYCGFPS +ERL+I+RA++K + L   ALE L E A A  +  F+GADLQ
Sbjct:  320 VQQSDFVEGIEDFQPTALIGVDLFKSSIK-WSDVGGLQQVRTVLKDTLELPTRYAKLYDNTPIKLPAGMLLYGPPGCGKTLLASAVAHECGLNFISVKGPEVLNKYIGASEQAIRDLFARAGSAAPSVLFLDEFDSIAPRRGADNTGVTDRLVNQLLTFLDGVEARKGVYVLAATSRPDMIDPALLRPGRLDKSLYCGFPSKEERLDILRAVSKDMELSEEALECLPEIASAPKSVYFSGADLQ 562
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: K3X5Y9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5Y9_GLOUD)

HSP 1 Score: 306 bits (783), Expect = 6.110e-97
Identity = 157/244 (64.34%), Postives = 187/244 (76.64%), Query Frame = 1 
Query:    1 VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            + QTD    +  F P AL    L   + + W DVGGL  VR  L+D LELP RY +L +  P +LP G LLYGPPGCGKTLLA A A ECGLNF+SVKGPEVL+KYIGASEQA+R LFARA +AAP +LF DEF+++APRRG+DNTGVTDR+VNQLLTFLDGVEG  GVYVLAATSRPDM+DPALLRPGRLD+ LYCGFP+ +ER++I++A+ K + L   ALE L E A A  +  F+GADLQ
Sbjct:  277 ILQTDFVDGVKDFQPTALIGVDLFKSTVK-WSDVGGLNSVRTVLKDTLELPTRYGKLYDNTPIKLPAGMLLYGPPGCGKTLLASAVANECGLNFISVKGPEVLNKYIGASEQAIRDLFARAASAAPSVLFLDEFDSIAPRRGADNTGVTDRLVNQLLTFLDGVEGRKGVYVLAATSRPDMIDPALLRPGRLDKSLYCGFPTEEERVDILQAVGKDMELNEEALEYLPEIAAAPKSVHFSGADLQ 519
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A7S3LGK5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LGK5_9STRA)

HSP 1 Score: 304 bits (779), Expect = 9.440e-97
Identity = 159/242 (65.70%), Postives = 188/242 (77.69%), Query Frame = 1 
Query:    7 QTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            Q D   AL G+TP +L  A L A S   W DVGGL  VR  L++ LELP++Y  L E +P RL +G LLYGPPGCGKTLLAGA AAECGLNF+SVKGPEVL+KYIGASEQAVR LF+R  AAAPC+LFFDEF+A+AP+RG+D+TGVTDRVVNQLLTFLDGVE   GVYV+AATSRPD++DPALLRPGRLD+QL CGFP+ +ER  I++A+A  + L   A+  L   A +  A  FTGADLQ
Sbjct:  229 QRDFETALVGYTPASLIGASL-AKSDTKWSDVGGLDEVRRVLKETLELPLQYAALYERSPQRLASGILLYGPPGCGKTLLAGAVAAECGLNFISVKGPEVLNKYIGASEQAVRDLFSRGAAAAPCVLFFDEFDAVAPKRGNDSTGVTDRVVNQLLTFLDGVESRTGVYVMAATSRPDLVDPALLRPGRLDKQLLCGFPTVRERTSILQAVAAKMDLTEDAVAELANIASSKEAELFTGADLQ 469
[Close]
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Match: A0A8K1FIP8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIP8_PYTOL)

HSP 1 Score: 311 bits (797), Expect = 1.170e-95
Identity = 160/242 (66.12%), Postives = 190/242 (78.51%), Query Frame = 1 
Query:    7 QTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLELPVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGPEVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFPSAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQ 732
            Q D T AL+GF P AL    L   S + W DVGGL+ VR  L+D LELP RY +L +  P +LP G LLYGPPGCGKTLLA A A+ECGLNF+SVKGPEVL+KYIGASEQA+R LFARA +AAP +LF DEF+++APRRG+DNTGVTDR+VNQLLTFLDGVE   GVYVLAATSRPDM+DPALLRPGRLD+ LYCGFP+  +RL+I+RA+A+ + L   A E L+E A A  +  F+GADLQ
Sbjct:  648 QADFTQALEGFQPTALVGVDLFKSSVQ-WDDVGGLSSVRNVLKDTLELPTRYGKLYDQTPIKLPAGMLLYGPPGCGKTLLASAVASECGLNFISVKGPEVLNKYIGASEQAIRDLFARAASAAPSVLFLDEFDSIAPRRGADNTGVTDRLVNQLLTFLDGVESRKGVYVLAATSRPDMIDPALLRPGRLDKSLYCGFPNEVDRLDILRAVARKMELSDEAHEYLQEIAAAPKSTQFSGADLQ 888
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161240 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM64_9STRA9.950e-196100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4DDG9_HETAK1.360e-10870.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5L6R6_9PHAE2.340e-10173.55Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
A0A3F2RL18_9STRA1.900e-10065.16AAA domain-containing protein n=1 Tax=Phytophthora... [more]
W7TM05_9STRA1.510e-9967.92Peroxisome biogenesis n=1 Tax=Nannochloropsis gadi... [more]
D7FVI2_ECTSI9.660e-9978.26Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A421F2X5_9STRA3.920e-9865.57Peroxin-1 n=2 Tax=Phytophthora kernoviae TaxID=325... [more]
K3X5Y9_GLOUD6.110e-9764.34Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3LGK5_9STRA9.440e-9765.70Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A8K1FIP8_PYTOL1.170e-9566.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:404252..406798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161240|e_gw1.16.201.1
KEGG TC3.A.16.1,3.A.20.1
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01020,ko03019,ko04050,ko04090,ko04131,ko04147
KEGG ModuleM00400,M00403
KEGG Pathwayko01521,ko04010,ko04014,ko04015,ko04141,ko04144,ko04146,ko04151,ko04550,ko04810,ko05134,ko05200,ko05215,ko05226,ko05230,map01521,map04010,map04014,map04015,map04141,map04144,map04146,map04151,map04550,map04810,map05134,map05200,map05215,map05226,map05230
KEGG koko:K05093,ko:K13338,ko:K13525
EC2.7.10.1
GOsGO:0000003,GO:0000166,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007017,GO:0007031,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007422,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010001,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019953,GO:0021782,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0030154,GO:0030554,GO:0031090,GO:0031903,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042063,GO:0042579,GO:0042623,GO:0042886,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0044877,GO:0045184,GO:0046907,GO:0046982,GO:0046983,GO:0048137,GO:0048232,GO:0048468,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0060151,GO:0060152,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901265,GO:1901363
Preferred namePEX1
Descriptionestablishment of protein localization to peroxisome
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0464@1|root,COG0554@1|root,KOG0728@2759|Eukaryota,KOG0735@2759|Eukaryota
Evalue1.58e-99
Seed ortholog2880.D7FVI2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCDC48 domain 2-like
Ec32 orthologEc-05_005940.1
TranscriptId161562
TrackFilteredModels1
ProteinId161240
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161240gene_2958Tribonema minus UTEX_B_3156 geneContig_16 404252..406798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2958_1exon_2958_1Tribonema minus UTEX_B_3156 exonContig_16 404252..404554 +
exon_2958_2exon_2958_2Tribonema minus UTEX_B_3156 exonContig_16 405351..405639 +
exon_2958_3exon_2958_3Tribonema minus UTEX_B_3156 exonContig_16 406548..406798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2958CDS_2958Tribonema minus UTEX_B_3156 CDSContig_16 404252..404554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161240Trimin1|161240|e_gw1.16.201.1Tribonema minus UTEX_B_3156 polypeptideContig_16 404252..406798 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Trimin1|161240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_16:404252..406798+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCACTCAAACCGACATCACAGCGGCGCTCGACGGGTTCACGCCGGAGGC
GCTCGCGGCGGCGCGCCTTACGGCGCCGTCGCGCCGCGGCTGGGGCGACG
TGGGCGGGCTCGCGGGCGTGCGCGCGGCGCTGCGCGACCTGCTCGAGCTG
CCCGTGCGCTACCGCCGCCTCGTGGAGTGCGCGCCGTGCCGCCTGCCGAC
GGGCGCGCTGCTGTACGGGCCGCCGGGCTGCGGGAAGACGCTGCTCGCGG
GCGCCGCCGCCGCGGAGTGCGGCCTCAACTTTCTGTCCGTCAAGGGCCCG
GAGGTGCTGGACAAGTACATCGGCGCGAGCGAGCAGGCCGTGCGCGGGCT
CTTCGCGCGCGCGACCGCCGCCGCGCCGTGCCTCCTCTTCTTCGACGAGT
TCGAGGCGCTCGCGCCGCGCCGCGGCAGCGACAACACGGGCGTCACGGAC
CGCGTCGTGAACCAGCTGCTCACCTTCCTCGACGGCGTGGAGGGGCTCGC
GGGCGTGTACGTGCTCGCCGCGACGTCGCGCCCGGACATGCTCGACCCCG
CGCTGCTTCGGCCGGGGCGCCTCGACCGGCAGCTCTACTGCGGCTTCCCC
TCGGCACAGGAGAGGCTCGAGATCATCCGCGCTATGGCCAAGCCCCTGTC
GCTGGAGGCGGGTGCGCTGGAGGCCTTGGAAGAGGGAGCCCAGGCTGCTG
CAGCGGCGGCGTTTACAGGGGCGGATTTGCAGGTACGTGAAGCTTCCGAC
CTGTCGTTCAGCAACATGAAAGGGGATGGAATTTGGCAGGTTAATGCAGC
GCAACTTCCGCGAAGGGCATGTCTCACTACTTGGGTTGCCTGA
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protein sequence of jgi.p|Trimin1|161240

>Trimin1|161240|e_gw1.16.201.1 ID=Trimin1|161240|e_gw1.16.201.1|Name=jgi.p|Trimin1|161240|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp
VTQTDITAALDGFTPEALAAARLTAPSRRGWGDVGGLAGVRAALRDLLEL
PVRYRRLVECAPCRLPTGALLYGPPGCGKTLLAGAAAAECGLNFLSVKGP
EVLDKYIGASEQAVRGLFARATAAAPCLLFFDEFEALAPRRGSDNTGVTD
RVVNQLLTFLDGVEGLAGVYVLAATSRPDMLDPALLRPGRLDRQLYCGFP
SAQERLEIIRAMAKPLSLEAGALEALEEGAQAAAAAAFTGADLQVREASD
LSFSNMKGDGIWQVNAAQLPRRACLTTWVA*
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mRNA from alignment at Contig_16:404252..406798+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Trimin1|161240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2547bp|location=Sequence derived from alignment at Contig_16:404252..406798+ (Tribonema minus UTEX_B_3156 )
GTCACTCAAACCGACATCACAGCGGCGCTCGACGGGTTCACGCCGGAGGC
GCTCGCGGCGGCGCGCCTTACGGCGCCGTCGCGCCGCGGCTGGGGCGACG
TGGGCGGGCTCGCGGGCGTGCGCGCGGCGCTGCGCGACCTGCTCGAGCTG
CCCGTGCGCTACCGCCGCCTCGTGGAGTGCGCGCCGTGCCGCCTGCCGAC
GGGCGCGCTGCTGTACGGGCCGCCGGGCTGCGGGAAGACGCTGCTCGCGG
GCGCCGCCGCCGCGGAGTGCGGCCTCAACTTTCTGTCCGTCAAGGGCCCG
GAGGTGTGTGATGCGCGAGTGCTGAAAAAACAGTCGTTGTTGAGCTGCGT
GCGATGATGCGTGACGCTCCGCAATCAATAGTGTTCAACATCTAGAATAT
CAACAAGTAGGAAGTACGTTTTTGATTTCTTTAGAAACCAACTCTTGCTC
GACGGATTGCTCGAGAGTGTCGGCCGCGCAAACCACAGGCCCGGAGATGC
GGCACGCGCACGGGAACTTCTCGCTTGAAGTGTGTGCTGATGATGATGAT
GCGTGACGCTCCGTAATGTGTCGGCGACGCGTGCCGCAGGCGGGGGTTGC
GCGTCGGACGTCCGACGCTCGGCCTTGTGGGTGCCGCATGGCGTCGCCTC
TGCGACATGCTGGTCTGCTGATGGCGCGCACGTACGTCATCTCCTTTTTG
CGATTGGAAGCCAGCGTACGACCGCGATCAAGCAGGCTGTGCTCTCAGCC
TCTCCAGCGCTCGCTGCTGCTTGCATGACGCTCTGCGGTATCAGGCCACC
GTGCGTTGCGTATGCTCTCGCGTCTGCGGAACCAGCACGGCTCCGCCGGT
TCCTCTACAGGCGCAACAGAAATCCGCGCACATGGGCCAACCGCGCCGCC
ACAGCAGAGCAGCAGCATTCCCTCTCCTTTGCCGAGTTGATATTCTCACT
GACTCCAACCCCCCCCCCCCCCCCCCCAGCAGGTGCTGGACAAGAACATT
GGCGCGAGCGAGCAGGCCGTGCACGGCCTCTTCGTTTCTCTCCTGTGCTG
GGTCAACACTCTCACTGACCACCCCACCCCCCCCTACGGTCACTTGCAGG
TGCTGGACAAGTACATCGGCGCGAGCGAGCAGGCCGTGCGCGGGCTCTTC
GCGCGCGCGACCGCCGCCGCGCCGTGCCTCCTCTTCTTCGACGAGTTCGA
GGCGCTCGCGCCGCGCCGCGGCAGCGACAACACGGGCGTCACGGACCGCG
TCGTGAACCAGCTGCTCACCTTCCTCGACGGCGTGGAGGGGCTCGCGGGC
GTGTACGTGCTCGCCGCGACGTCGCGCCCGGACATGCTCGACCCCGCGCT
GCTTCGGCCGGGGCGCCTCGACCGGCAGCTCTACTGCGGTGAGTGAGAGG
CGACAGTGGCGCTTCTGCGGGGAGTGAGAGGGGCGCGCCGGTGCAGGGGA
CGGAGGCGACGCGCTGCTGCCGCCGGCGCTGCTGCTGCCGCTGTGTGTAG
TGGCAGCTGCAGTGGCAGCAGCAGCAGCAATGGCCGCCACAATGTTGTCG
TTTCGCGGACGTGCTGAATGCTTGTGTGACTTTCTGTCATGCTCAGGCCG
GCGCGAGACGGTGATTTGATTAGCCTTGGGTTTAGACTTGGGCCGCTCTG
CGTACCCGCTCAATGCGCTCGCCGCGACGTCGCGCCCCGACATGCTCTGC
CCGCACTGCTGCGGCCGGCAGCTCTACTGCGGTGAGTGCAAGGCTAGCGC
TTCTGCAGTGGCGCACCTGTGTAGGGAATGGGCGCGATGCGCTGCTGCTG
CTGCTGCGCAGCGTCGGCTGCGGCTGCTGCTGGTTGTGACCGCACCACAT
GAGTGCGACATGGTCAGCCATGCGACACTGCGGCCTGGACGACTTGGCCG
ACAGCTGTACGGCGGCAAGAGGGGAGAGGGGGGGGAGGCGCCGCGACAGC
AAGTGCACAGCGCCAGCGACGGTCGCACGTCAACGCCTGCGCGCTGTGAT
GCCGTTGCAGTCAGGGCGCCGCAACAGAGCACAGAGTAGAGCGCCGTAGT
GCTGGTGCAGTCAGGGACCCGCGAGGACGCAGTCGAGAGCTTTGTTGAAA
TACTGTACTATGGTGCTGGAATGCCGCACCATGCGTTGCCGATGGCATTC
TGCAGGCCGGCGCTCGCTGCCCCTTGAGATCTGGTGAACGCGCCGCTGCG
TCACTGCGTCCTGCGCCGCAGCAGCAGGGTCACACCGCGGCGCACGTCTC
ACACAGACAACGGCGGTACTGCTTTCTGTGCGTTGATCACGTGCAGGCTT
CCCCTCGGCACAGGAGAGGCTCGAGATCATCCGCGCTATGGCCAAGCCCC
TGTCGCTGGAGGCGGGTGCGCTGGAGGCCTTGGAAGAGGGAGCCCAGGCT
GCTGCAGCGGCGGCGTTTACAGGGGCGGATTTGCAGGTACGTGAAGCTTC
CGACCTGTCGTTCAGCAACATGAAAGGGGATGGAATTTGGCAGGTTAATG
CAGCGCAACTTCCGCGAAGGGCATGTCTCACTACTTGGGTTGCCTGA
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Coding sequence (CDS) from alignment at Contig_16:404252..406798+

>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Trimin1|161240|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_16:404252..406798+ (Tribonema minus UTEX_B_3156 )
GTCACTCAAACCGACATCACAGCGGCGCTCGACGGGTTCACGCCGGAGGC
GCTCGCGGCGGCGCGCCTTACGGCGCCGTCGCGCCGCGGCTGGGGCGACG
TGGGCGGGCTCGCGGGCGTGCGCGCGGCGCTGCGCGACCTGCTCGAGCTG
CCCGTGCGCTACCGCCGCCTCGTGGAGTGCGCGCCGTGCCGCCTGCCGAC
GGGCGCGCTGCTGTACGGGCCGCCGGGCTGCGGGAAGACGCTGCTCGCGG
GCGCCGCCGCCGCGGAGTGCGGCCTCAACTTTCTGTCCGTCAAGGGCCCG
GAGGTGCTGGACAAGTACATCGGCGCGAGCGAGCAGGCCGTGCGCGGGCT
CTTCGCGCGCGCGACCGCCGCCGCGCCGTGCCTCCTCTTCTTCGACGAGT
TCGAGGCGCTCGCGCCGCGCCGCGGCAGCGACAACACGGGCGTCACGGAC
CGCGTCGTGAACCAGCTGCTCACCTTCCTCGACGGCGTGGAGGGGCTCGC
GGGCGTGTACGTGCTCGCCGCGACGTCGCGCCCGGACATGCTCGACCCCG
CGCTGCTTCGGCCGGGGCGCCTCGACCGGCAGCTCTACTGCGGCTTCCCC
TCGGCACAGGAGAGGCTCGAGATCATCCGCGCTATGGCCAAGCCCCTGTC
GCTGGAGGCGGGTGCGCTGGAGGCCTTGGAAGAGGGAGCCCAGGCTGCTG
CAGCGGCGGCGTTTACAGGGGCGGATTTGCAGGTACGTGAAGCTTCCGAC
CTGTCGTTCAGCAACATGAAAGGGGATGGAATTTGGCAGGTTAATGCAGC
GCAACTTCCGCGAAGGGCATGTCTCACTACTTGGGTTGCCTGA
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