mRNA_2941 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161169
Unique NamemRNA_2941
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161169 vs. uniprot
Match: A0A836CJ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ35_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.850e-31
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 
Query:    1 MVASAKCQHPLCTRKAFYLFDGGPIQFCSQHKLAGQHDSRNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEHCCPPPSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAPPGERGQV 432
            MVASAKCQHPLCTRKAFYLFDGGPIQFCSQHKLAGQHDSRNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEHCCPPPSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAPPGERGQV
Sbjct:    1 MVASAKCQHPLCTRKAFYLFDGGPIQFCSQHKLAGQHDSRNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEHCCPPPSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAPPGERGQV 144
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BLAST of jgi.p|Trimin1|161169 vs. uniprot
Match: A0A835YV08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV08_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 KCQHPLCTRKAFYLFDGGPIQFCSQHKLAGQHDSRNRR 129
            KC+HP CTRKAFYL DGG ++FCS HKL G HDSRNRR
Sbjct:    2 KCEHPTCTRKAFYLHDGGAVRFCSLHKLGGMHDSRNRR 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161169 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CJ35_9STRA7.850e-31100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV08_9STRA2.030e-1176.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:202011..205661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161169|e_gw1.16.207.1
Hectar predicted targeting categoryother localisation
TranscriptId161491
TrackFilteredModels1
ProteinId161169
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161169gene_2941Tribonema minus UTEX_B_3156 geneContig_16 202011..205661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161169Trimin1|161169|e_gw1.16.207.1Tribonema minus UTEX_B_3156 polypeptideContig_16 202011..205661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2941_4exon_2941_4Tribonema minus UTEX_B_3156 exonContig_16 202011..202278 -
exon_2941_3exon_2941_3Tribonema minus UTEX_B_3156 exonContig_16 203954..204064 -
exon_2941_2exon_2941_2Tribonema minus UTEX_B_3156 exonContig_16 204696..204770 -
exon_2941_1exon_2941_1Tribonema minus UTEX_B_3156 exonContig_16 205531..205661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2941CDS_2941Tribonema minus UTEX_B_3156 CDSContig_16 205531..205661 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Trimin1|161169|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_16:202011..205661- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCAGCGCCAAGTGCCAGCATCCTCTGTGCACCAGGAAGGCGTT
CTATCTTTTTGACGGCGGTCCCATCCAGTTCTGTTCCCAGCACAAGCTCG
CAGGGCAACACGACAGCCGTAATCGCAGATGCGAGTCCGAGGGCTGCAGC
CGCAGGCCCTACTTCTCCTTCCCCACCGAGAAGCCGAGGTTCTGCAGCTC
GCACAAGCTGGAGGGCATGGCGGACGTGCAGAGCCGGCGCTGCGACGCCC
CCGGCTGCGACAGGCGCCCCTACTACGGTGAGCACTGCTGCCCCCCCCCC
TCCTCTTCTCCCCGCCGCTTCTGCAGCGCGCACAAGCTGCCCAACATGTT
CGACGTCAAGAACCGCCGCTGCGCCGCCGCCGGCTGCAAGAAGCAGCCCA
TCTACGCGCCGCCCGGCGAGCGCGGCCAGGTCTGCTCCGCGCACAAGGCG
CCGGGCATGGTCAACATCCAGAAGCGCGCGTGCGGCGCCGCGGGCTGCCG
CGCGCCGCCGACGCACAACCGCGACGGCGAGCGCGCCGCGTGGTGCGCCG
CGCACGCCGCGCCGGGCATGGTCGTGGTGAAGGTG
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protein sequence of jgi.p|Trimin1|161169

>Trimin1|161169|e_gw1.16.207.1 ID=Trimin1|161169|e_gw1.16.207.1|Name=jgi.p|Trimin1|161169|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp
MVASAKCQHPLCTRKAFYLFDGGPIQFCSQHKLAGQHDSRNRRCESEGCS
RRPYFSFPTEKPRFCSSHKLEGMADVQSRRCDAPGCDRRPYYGEHCCPPP
SSSPRRFCSAHKLPNMFDVKNRRCAAAGCKKQPIYAPPGERGQVCSAHKA
PGMVNIQKRACGAAGCRAPPTHNRDGERAAWCAAHAAPGMVVVKV
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mRNA from alignment at Contig_16:202011..205661-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Trimin1|161169|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3651bp|location=Sequence derived from alignment at Contig_16:202011..205661- (Tribonema minus UTEX_B_3156 )
ATGGTTGCCAGCGCCAAGTGCCAGCATCCTCTGTGCACCAGGAAGGCGTT
CTATCTTTTTGACGGCGGTCCCATCCAGTTCTGTTCCCAGCACAAGCTCG
CAGGGCAACACGACAGCCGTAATCGCAGATGGTGAGCCAAGCATGACGCA
CCTGCAAAGCGGTTATGGGACAGTGTTCAATCCTTGTTTGAGTAATGTTT
TCTCAGCACACGTTAGTGATAAAAGGCACCTGTCAGCGAAGCCGACCCCA
CGAGACTCTTGTGCCTGCCTCCGCCAAGTGTTTCTCTAGTTGCAGTTGGC
GTCTAGGTACTGCGCTACTGCGCTGCATCAACTTGGATGACCTTGCCAAT
TCGTTCAATGCTTGTCGACCAGCATCAAATTATTGCTTGGGCAGTGCGCG
CTTGCACTCACACGGTCTGCGGCCGCTGTTTGTCCACAAGAGCTTAAGCA
CAGAAATGGAGGCGACGAGGACTGATTGTTACAGTGTTAAGAACGACTGT
GGAGTCCGCCAGCCTTCCTGCGCCCTTCGATTGCGCTCGCATGCGCAACT
CCCACCCGCTATAGTATCTACATTTCATCGTGTGCTGATGCGCGAACATG
AGGTGTGCTGATGGCAACATCAACATGTTCCCCCTGCTGTCCCCACCTTC
CTGAGGCGCGCACCTCTACCACACACGGTCCACCCGACGCACACGCGCGT
ACACCCGCAACTGGCGTAGTGATCTGCCGCTTTTCATGGCAGCAGCACGA
ATATCCAGCCCGCAATTCGACTGCATAGCTCGTGTTCACACAGCCCATGC
ACCAATGTACTGCACGTCCACTGCCCCCGCCTCACAACGCGCGCGCTCAC
GCCGGTGCCCCCCCCCCCCCCCCCCCCCCGCGCCTCCGCAGCGAGTCCGA
GGGCTGCAGCCGCAGGCCCTACTTCTCCTTCCCCACCGAGAAGCCGAGGT
TCTGCAGCTCGCACAAGTGAGAGTCGTTTTCGCGAGCGGCGCGGCTTGTG
CGCGACGTGATTTCGCCTGCTCGACCCCTCTCCTCTGAGCGTCACGCATG
TTCGCGGCACGGCGCCAGCGCACACGCGCACCCCGCAGCCTTTGGCTGAC
GTGGCGCGGACGTTCGCCGCGGCGCCCGCGCTGCGAGCGGCCGCAGGCGA
GCGCTGCTGTCTGCGCGGGCGGCGCTGGCTGCTCCGAGGGGCAGACATGA
TGCCGCTGCGCGCGCGTATAGAGCCCCATCCGCCTGTGTGCTACAGAGTG
CCTGTCGGACTGCAGGCGCGCGTGCGACGCTTCAACAGATATTGCGCCCT
GGGCAGTGCACTGCCGCGTCCGCGCGCGGTGCCTGCAGCAAGCGCTCAGC
TCGCGTTTCTTGTCCTTGCGGCACATGCACGTCGTCGGACGCGCGCGCGC
ACACGGCGCTGCAGCCTTCTGTCGTGCTCAGCACCGCAGCAGCGCTCCGC
AGTGGTGCGCGCTCACGTGCCAAGCGGTCATCTGCTGCCGGCGCCTCGCA
CAGAGGTGGCCGTTGCCTCTCAACCCCATCACCCCATCAGCAGCACCCAG
CGCAGCACTGACAGCCTCCGGTGCTCTCGTCCGCTGCGCGCACGCAGGCT
GGAGGGCATGGCGGACGTGCAGAGCCGGCGCTGCGACGCCCCCGGCTGCG
ACAGGCGCCCCTACTACGGTGAGCACTGCTGCCCCCCCCCCTCCTCTTCT
CCCCGCCGGTGCTTGCTGATTGTCGGACACTGCCGCTCATGCCACCTGTT
GAGCGCTGCCGTGCGCGCTCCGCGGCAGCGCTGCGCAGCAGGTGCGGCCG
CGCGGCGCGTCGCACGGAGGCGGGTTGCACGGAGGCGGGTTGCACGCGCG
CGGCTGCCTTCGCCTGCGCCCGCGCCCCCGCTGCGCGCGTGACGGCGCAG
CGGCTCGGCCCTCGGCCGCGACGACGCTGCTGCATACGCGTTTGCTGGCC
TTGCGGAATGTGCCTGCCTATTTGCAATGATGCCCTCCGTATTTGACGTG
TGCGCGCGCACCCAGGCCCCCCACTGACTTCTCTTTGAGCCCCGCAGGGC
TCCGCTGCGAGCGCGCTCATAGGCGTTTGCCGCGCAGCGCGGCCGCAGCA
GTGCTCTGTTGCACCGCTTGCTGCTGGCGCGGCAACCTGCAGACGAGGCG
CTGCACAGCGGCCAATACGCTTCTCTTCAGACAACAGGCTTCCTGTTGCG
CCGCGTGCGCCGTCGCTGCCGCCGCCGCCGGCGTTGACCCGCAACGCACT
TGAACTTGACCTCGTGAACTTGAACTTGCGCGCCGCGCAGGCCCGCGCAA
CGAGCGCGCGGTCCGCTGCTTCCTGCACAAGGAGGAGGGCCACGTGGACG
TGCAGAAGGGCCAGTGCCAGTCGGATGGGTGTGCCAAGAAGCCGTACTTT
GGCTTCCGCGGCGAGCGCGCGCGCTTCTGCTGCGGCCACAAGGTGAGCTG
CCGCCACCGCCGCTGCTGCTGCTGCTGCGCGTAGCACTGCCCTGGTTGGA
GTGCGACAGCCACCATTGTGGTGACTGCGCTGGACGCAGCCGCCCCCCCT
GCGCTGTGCGGTGCCGCAGGCTGCGTGGTTTGGAGCTCGCGCGGCTGAGG
CGGCGCTGCTGTCTCCGTTGTGCGGCGGCCTAGGCTCTGGGGCCGCGCCT
CATTCCCGGACAGCGCTCAGCACTGTACGAAAGCGTCTTCTCAGCACCAG
CCTTTTCAGCCCGTGATCTTGATCTTGCCCCATGCCTTTCTTGATCATGC
CCTTCTTGGTCTCCAGTCAGCACAGCGTCACGGCACACGCTGCGGACTCC
GCCGCCGCGACCGGCGGTTGTATCGTGGCACCCACATCACATTCCTGCCT
GCAGTATGTACCCACTGTCCGCAGCATGCCTGCGCATGAACGACAAGCTC
TCCGCGCGCGCCATTCTCACCAGTCCTCGCCGGCTCACGCACTCCCCCCG
CCGCAGCTCCCGGGCATGCTGGACGTGCAGAGGCGCAGGCGCTGCGACCA
CTCCGAGTGCGAGCGCCAGCCGTGCTTCGCGTACGAGGGCGACCCGCCGC
GGTGAGTCGACGTTGAAGTTCATATGCATTGTTGATGTTCAGACCCCATG
CCTGCGTGGCGTGGCGCAGCGTGCTGCTGCCCGTCCGTCCCCAGATCTCG
TGGCGGTGGAAGTAGCAGTGCTGACGTGGCTGCACCTGCGCTCTGCTGGT
CGCTGTAAGGGCACTAACTCTCAGCCCTCTACGCGGCCACGCACGACCGC
CCGCGTGCTTCGCTGCCCTCCCTGGCCTTGTCAAAAATAGAGGAATGTCA
TGGCGAGGTTGCCGCGCGCACACAGCATCTCACTCACCCCCACCCCCCCC
CAACCCTCCCCACCCCCCTACCCCCGCGCGCAGCTTCTGCAGCGCGCACA
AGCTGCCCAACATGTTCGACGTCAAGAACCGCCGCTGCGCCGCCGCCGGC
TGCAAGAAGCAGCCCATCTACGCGCCGCCCGGCGAGCGCGGCCAGGTCTG
CTCCGCGCACAAGGCGCCGGGCATGGTCAACATCCAGAAGCGCGCGTGCG
GCGCCGCGGGCTGCCGCGCGCCGCCGACGCACAACCGCGACGGCGAGCGC
GCCGCGTGGTGCGCCGCGCACGCCGCGCCGGGCATGGTCGTGGTGAAGGT
G
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Coding sequence (CDS) from alignment at Contig_16:202011..205661-

>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Trimin1|161169|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=585bp|location=Sequence derived from alignment at Contig_16:202011..205661- (Tribonema minus UTEX_B_3156 )
ATGGTTGCCAGCGCCAAGTGCCAGCATCCTCTGTGCACCAGGAAGGCGTT
CTATCTTTTTGACGGCGGTCCCATCCAGTTCTGTTCCCAGCACAAGCTCG
CAGGGCAACACGACAGCCGTAATCGCAGATGCGAGTCCGAGGGCTGCAGC
CGCAGGCCCTACTTCTCCTTCCCCACCGAGAAGCCGAGGTTCTGCAGCTC
GCACAAGCTGGAGGGCATGGCGGACGTGCAGAGCCGGCGCTGCGACGCCC
CCGGCTGCGACAGGCGCCCCTACTACGGTGAGCACTGCTGCCCCCCCCCC
TCCTCTTCTCCCCGCCGCTTCTGCAGCGCGCACAAGCTGCCCAACATGTT
CGACGTCAAGAACCGCCGCTGCGCCGCCGCCGGCTGCAAGAAGCAGCCCA
TCTACGCGCCGCCCGGCGAGCGCGGCCAGGTCTGCTCCGCGCACAAGGCG
CCGGGCATGGTCAACATCCAGAAGCGCGCGTGCGGCGCCGCGGGCTGCCG
CGCGCCGCCGACGCACAACCGCGACGGCGAGCGCGCCGCGTGGTGCGCCG
CGCACGCCGCGCCGGGCATGGTCGTGGTGAAGGTG
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