mRNA_2900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159359
Unique NamemRNA_2900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A836C8K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K1_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.470e-88
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEYDSAGVKNRLQGRSKYGAKKPKKPRPTKAELAALGDIEDALLQQPDALATHVAAVAAAAQADVKRQGCCRCRRC 399
            GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEYDSAGVKNRLQGRSKYGAKKPKKPRPTKAELAALGDIEDALLQQPDALATHVAAVAAAAQADVKRQGCCRCRRC
Sbjct:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEYDSAGVKNRLQGRSKYGAKKPKKPRPTKAELAALGDIEDALLQQPDALATHVAAVAAAAQADVKRQGCCRCRRC 133
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: B7T1Z8_VAULI (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Z8_VAULI)

HSP 1 Score: 117 bits (292), Expect = 2.070e-29
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRTSTRDLI+KYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFD SL+YVC+Y
Sbjct:  176 GLIGNRTSTRDLINKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDNSLEYVCDY 235
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A351LCD6_9CYAN (Ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11371 TaxID=2055770 RepID=A0A351LCD6_9CYAN)

HSP 1 Score: 109 bits (272), Expect = 2.620e-28
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRTS RDLIDKY+++VPMPVLEVLPLIEDIRVSRVKGKTLFEMAE D SL+YVC+Y
Sbjct:    5 GLIGNRTSKRDLIDKYVESVPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDY 64
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: U7QG19_9CYAN (Nitrogenase n=1 Tax=Lyngbya aestuarii BL J TaxID=1348334 RepID=U7QG19_9CYAN)

HSP 1 Score: 109 bits (272), Expect = 3.090e-27
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRTS RDLIDKYID+VPMPVLE+LPLIEDIRVSRVKGKTLFEMAE D +L YVC+Y
Sbjct:   96 GLIGNRTSKRDLIDKYIDSVPMPVLEILPLIEDIRVSRVKGKTLFEMAETDPTLSYVCDY 155
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A514CPW4_9STRA (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=5 Tax=Ochrophyta TaxID=2696291 RepID=A0A514CPW4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.010e-26
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRT+TRDLIDKY++TVPMPVLEVLPLIEDIR+SR+KGKTLFEMAE + SL Y+CEY
Sbjct:  176 GLIGNRTATRDLIDKYVNTVPMPVLEVLPLIEDIRISRIKGKTLFEMAETEPSLSYICEY 235
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A7S6U9V6_9STRA (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.070e-26
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRT++RDLIDKYID VPMPVLEVLPLIEDIRVSRVKGKTLFEM E D SL+YVCEY
Sbjct:  176 GLIGNRTASRDLIDKYIDAVPMPVLEVLPLIEDIRVSRVKGKTLFEMTESDDSLNYVCEY 235
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: CHLL_SYNY3 (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=76 Tax=root TaxID=1 RepID=CHLL_SYNY3)

HSP 1 Score: 108 bits (271), Expect = 2.540e-26
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRTS RDLIDKYI+ VPMPVLE+LPLIEDIRVSRVKGKTLFEMAE D SL+YVC+Y
Sbjct:  178 GLIGNRTSKRDLIDKYIEAVPMPVLEILPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDY 237
[Close]
BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A222AH84_9CRYP (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=7 Tax=root TaxID=1 RepID=A0A222AH84_9CRYP)

HSP 1 Score: 108 bits (271), Expect = 2.690e-26
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRT+ RDLI+KY+D VPMP+LEVLPLIEDIR+SRVKGKTLFEM+E DTSL+YVC+Y
Sbjct:  176 GLIGNRTAKRDLIEKYVDAVPMPILEVLPLIEDIRISRVKGKTLFEMSELDTSLNYVCDY 235
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BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A6N8FXX7_9CHRO (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=4 Tax=root TaxID=1 RepID=A0A6N8FXX7_9CHRO)

HSP 1 Score: 108 bits (271), Expect = 3.490e-26
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRT+ RDLIDKYI++VPMPVLEVLPLIEDIRVSRVKGKTLFEMAE D SL+YVC+Y
Sbjct:  193 GLIGNRTAKRDLIDKYIESVPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDPSLEYVCDY 252
[Close]
BLAST of jgi.p|Trimin1|159359 vs. uniprot
Match: A0A0P7ZYD8_9CYAN (Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein n=5 Tax=Phormidium TaxID=1198 RepID=A0A0P7ZYD8_9CYAN)

HSP 1 Score: 108 bits (270), Expect = 3.500e-26
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEFDTSLDYVCEY 180
            GLIGNRTS RDLIDKYI+TVPMPVLE+LPLIEDIRVSRVKGKTLFEM E D +L+YVC+Y
Sbjct:  176 GLIGNRTSKRDLIDKYIETVPMPVLEILPLIEDIRVSRVKGKTLFEMTETDAALNYVCDY 235
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159359 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8K1_9STRA4.470e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7T1Z8_VAULI2.070e-2993.33Light-independent protochlorophyllide reductase ir... [more]
A0A351LCD6_9CYAN2.620e-2886.67Ferredoxin:protochlorophyllide reductase (ATP-depe... [more]
U7QG19_9CYAN3.090e-2786.67Nitrogenase n=1 Tax=Lyngbya aestuarii BL J TaxID=1... [more]
A0A514CPW4_9STRA1.010e-2683.33Light-independent protochlorophyllide reductase ir... [more]
A0A7S6U9V6_9STRA1.070e-2688.33Light-independent protochlorophyllide reductase ir... [more]
CHLL_SYNY32.540e-2686.67Light-independent protochlorophyllide reductase ir... [more]
A0A222AH84_9CRYP2.690e-2681.67Light-independent protochlorophyllide reductase ir... [more]
A0A6N8FXX7_9CHRO3.490e-2686.67Light-independent protochlorophyllide reductase ir... [more]
A0A0P7ZYD8_9CYAN3.500e-2685.00Light-independent protochlorophyllide reductase ir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:1808925..1809326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159359|e_gw1.8.163.1
BiGG ReactioniJN678.chlL
BRITEko00000,ko00001,ko01000
KEGG rclassRC01008
KEGG ReactionR06282
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG koko:K04037
EC1.3.7.7
Preferred namechlL
DescriptionComponent of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP
COG categoryP
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG1348@1|root,COG1348@2|Bacteria,1G0G7@1117|Cyanobacteria
Evalue1.95e-28
Seed ortholog1173026.Glo7428_1356
Hectar predicted targeting categoryother localisation
TranscriptId159681
TrackFilteredModels1
ProteinId159359
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159359gene_2900Tribonema minus UTEX_B_3156 geneContig_8 1808925..1809326 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2900_1exon_2900_1Tribonema minus UTEX_B_3156 exonContig_8 1808925..1809326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2900CDS_2900Tribonema minus UTEX_B_3156 CDSContig_8 1808925..1809326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159359Trimin1|159359|e_gw1.8.163.1Tribonema minus UTEX_B_3156 polypeptideContig_8 1808925..1809326 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Trimin1|159359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_8:1808925..1809326- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTTTAATAGGAAATCGAACATCAACACGTGATCTAATTGATAAATATAT
TGATACAGTTCCAATGCCAGTTTTAGAAGTTTTACCGCTTATTGAAGACA
TTCGTGTATCAAGAGTGAAAGGGAAAACTTTATTTGAAATGGCTGAATTT
GATACTTCTCTTGATTATGTTTGTGAGTATGATAGTGCTGGTGTGAAAAA
TCGTTTACAAGGTCGATCAAAATACGGTGCTAAAAAACCAAAAAAACCCA
GGCCCACCAAAGCAGAGCTGGCAGCACTAGGAGACATCGAAGACGCCCTA
CTACAGCAGCCGGATGCGCTCGCCACACACGTCGCCGCGGTTGCTGCCGC
TGCCCAGGCGGACGTCAAACGCCAAGGCTGCTGTCGCTGCAGACGCTGCT
GA
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protein sequence of jgi.p|Trimin1|159359

>Trimin1|159359|e_gw1.8.163.1 ID=Trimin1|159359|e_gw1.8.163.1|Name=jgi.p|Trimin1|159359|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=134bp
GLIGNRTSTRDLIDKYIDTVPMPVLEVLPLIEDIRVSRVKGKTLFEMAEF
DTSLDYVCEYDSAGVKNRLQGRSKYGAKKPKKPRPTKAELAALGDIEDAL
LQQPDALATHVAAVAAAAQADVKRQGCCRCRRC*
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mRNA from alignment at Contig_8:1808925..1809326-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Trimin1|159359|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_8:1808925..1809326- (Tribonema minus UTEX_B_3156 )
GGTTTAATAGGAAATCGAACATCAACACGTGATCTAATTGATAAATATAT
TGATACAGTTCCAATGCCAGTTTTAGAAGTTTTACCGCTTATTGAAGACA
TTCGTGTATCAAGAGTGAAAGGGAAAACTTTATTTGAAATGGCTGAATTT
GATACTTCTCTTGATTATGTTTGTGAGTATGATAGTGCTGGTGTGAAAAA
TCGTTTACAAGGTCGATCAAAATACGGTGCTAAAAAACCAAAAAAACCCA
GGCCCACCAAAGCAGAGCTGGCAGCACTAGGAGACATCGAAGACGCCCTA
CTACAGCAGCCGGATGCGCTCGCCACACACGTCGCCGCGGTTGCTGCCGC
TGCCCAGGCGGACGTCAAACGCCAAGGCTGCTGTCGCTGCAGACGCTGCT
GA
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Coding sequence (CDS) from alignment at Contig_8:1808925..1809326-

>mRNA_2900 ID=mRNA_2900|Name=jgi.p|Trimin1|159359|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=402bp|location=Sequence derived from alignment at Contig_8:1808925..1809326- (Tribonema minus UTEX_B_3156 )
GGTTTAATAGGAAATCGAACATCAACACGTGATCTAATTGATAAATATAT
TGATACAGTTCCAATGCCAGTTTTAGAAGTTTTACCGCTTATTGAAGACA
TTCGTGTATCAAGAGTGAAAGGGAAAACTTTATTTGAAATGGCTGAATTT
GATACTTCTCTTGATTATGTTTGTGAGTATGATAGTGCTGGTGTGAAAAA
TCGTTTACAAGGTCGATCAAAATACGGTGCTAAAAAACCAAAAAAACCCA
GGCCCACCAAAGCAGAGCTGGCAGCACTAGGAGACATCGAAGACGCCCTA
CTACAGCAGCCGGATGCGCTCGCCACACACGTCGCCGCGGTTGCTGCCGC
TGCCCAGGCGGACGTCAAACGCCAAGGCTGCTGTCGCTGCAGACGCTGCT
GA
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