mRNA_2795 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159079
Unique NamemRNA_2795
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A836C9P5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P5_9STRA)

HSP 1 Score: 614 bits (1583), Expect = 8.390e-222
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1
Query:    1 MAVHTEASRSNGSDASGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEERAFRISNLQS 948
            MAVHTEASRSNGSDASGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEERAFRISNLQS
Sbjct:    1 MAVHTEASRSNGSDASGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEERAFRISNLQS 316          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A4R2PCT9_RHOSA (Nucleoside-diphosphate-sugar epimerase n=3 Tax=Rhodothalassium salexigens TaxID=1086 RepID=A0A4R2PCT9_RHOSA)

HSP 1 Score: 184 bits (468), Expect = 6.210e-53
Identity = 131/306 (42.81%), Postives = 171/306 (55.88%), Query Frame = 1
Query:   46 SGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQD--SDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTP---VSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSAR--------GGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEERA 924
            +G LF FG+GY+ LA+A + +  G+ VSGT  ++ K +AL    G S +LFD T PL+ E  AA    THVL++IPPG DG EPVL HH   + R     W+GYLS+TGVYGD GGDWV E TP +P+ ++   R+ AE+AW        +P   FRLAGIYGPGR+AL +L  ++G       AR  V P    SRIHV DIA           P  + N+ D  PA   ++  +AA LLG A  P   D  + SA            +KRV    ++R L   G+ L YPDY SGL A+A  +A
Sbjct:    9 AGHLFCFGLGYSALALARAMVRAGWRVSGTVRTEEKARALAR-EGFSVWLFDATAPLA-EPEAAFEGVTHVLTSIPPG-DGPEPVLAHHRADIVRLAP-HWIGYLSTTGVYGDHGGDWVDEDTPLTPSGVRGSRRVEAEQAWAALYETHSLPVHRFRLAGIYGPGRNALVSL--QEGR------ARRIVKPGQVFSRIHVDDIAAVLRASMDRPDPGAVYNVCDDEPAPPQDLITYAAELLGVATPP---DIPFESAELSPMARSFYADNKRVRNDRIKRDL---GVTLAYPDYRSGLRALAAAQA 296          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: UPI000900CF10 (uncharacterized protein LOC109188901 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900CF10)

HSP 1 Score: 183 bits (465), Expect = 1.010e-51
Identity = 126/307 (41.04%), Postives = 165/307 (53.75%), Query Frame = 1
Query:   49 GKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSC-THVLSTIPPGADGTEPVLLHHARHLQRSTR---LQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDS--DSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLG---------CAAVPAAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEERA 924
            G++FI G+G+ G   A    ++G+TVSGTCTS +K + L    G   F+FD  +PL    V  +  C +H+L +IPP   GT   +L H + L    +   LQWLGYLSST VYGD  G WV E  P   TT  ARARL AE  W     D  + ++VFRL GIYGPGRSA+DT++ K G ++     R +    SRIHVADI QA        +P  + N+ D  PA R EVF  A  L+          C     A+      A  GG KRV      RM +  G++L+YP Y+SGLA++ E  A
Sbjct:   55 GRMFILGMGFVGEFFAADLKSKGWTVSGTCTSAAKKKKLDE-MGYDAFVFDAKDPLP--EVLDVMKCHSHLLISIPP-VPGTGDPMLQHRKLLNNRLKGGDLQWLGYLSSTSVYGDCSGAWVDEEFPARATTESARARLAAEEGWLQLGLDLEIASQVFRLGGIYGPGRSAVDTIL-KQGALSKSQLVRSSKRFTSRIHVADICQALNASIQKPSPGRIYNIVDDDPAPRKEVFQFAESLVEKKWPDSIKQCNLTEDASSLGPKGAYNGGEKRVSNG---RMKEELGVRLLYPTYKSGLASIVERVA 353          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: UPI000E6AC31E (SDR family oxidoreductase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AC31E)

HSP 1 Score: 181 bits (458), Expect = 1.720e-51
Identity = 129/300 (43.00%), Postives = 163/300 (54.33%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQD--SDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTP---VSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAA-DAAYVSARG----GGSKRVDGTLLRRMLQARGLQLVYPDYESGLAA-VAEE 918
            +LFIFG+GY+ +A+A     +G+ V+GT  S  KL+AL+   G+  FLF    PL     AA+   TH+LS++PP  +G + VL  H   +     L+W GYLS+TGVYGDAGGDWV E +P  P T + +AR  AE  W +      VP  +FRL GIYGPGRS+LD + A          AR    P    SRIHV DIA           P  + N+ D  PA  HEV AHAARLLG    P    D A +S       G SKRV  +   R+ Q  G+ L YP Y  GLAA +AEE
Sbjct:    7 RLFIFGLGYSAMALARRLTAQGWQVAGTTRSPDKLEALRAA-GVEPFLFGRGRPLD-NPAAALAGVTHLLSSVPPDGEG-DAVLDLHGADIASIAGLRWAGYLSTTGVYGDAGGDWVDESSPVQPITARGKARAAAESGWMELHGGRGVPVHIFRLPGIYGPGRSSLDAVRADT--------ARRIDKPGQVFSRIHVEDIAATLEASMARPNPGAVYNVCDDEPAPGHEVTAHAARLLGVEPPPLIPIDQAELSPMAASFYGESKRVRNS---RIKQELGVVLRYPTYREGLAAQLAEE 292          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: H8FRN6_MAGML (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Magnetospirillum molischianum DSM 120 TaxID=1150626 RepID=H8FRN6_MAGML)

HSP 1 Score: 178 bits (451), Expect = 1.660e-50
Identity = 123/307 (40.07%), Postives = 173/307 (56.35%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPL---SIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVA-------KDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSARGGGS----------KRVDGTLLRRMLQARGLQLVYPDYESGLAAVA 912
            K+F+FG+GY+G  +A + ++RG+ V+GT T   ++  L    G+ TF FD   P+   +++GV+AI      LST+PP A+G +PV+     H  R  + +W+GYLS+TG+YGD GG WV E TPP PT  ++R RL AE++WQ+S   +P  +FRLAGIYGPGRSA++ +++       K G M             SRIHV DIA++        AP  + NL D  PA   +V  HA  LLG   V   A+ ++  AR   S          KRV     RRM +  G++L YP Y  GLAA+A
Sbjct:    4 KIFVFGLGYSGKTVARALLDRGWIVAGT-TRSGRVDDLP---GVETFAFDRDHPVPDSALDGVSAI------LSTVPPDAEG-DPVVATMG-HALRMRQPRWVGYLSTTGLYGDHGGGWVDETTPPDPTQDRSRRRLEAEQSWQESG--MPLHMFRLAGIYGPGRSAIEQVLSGTARRINKPGQM------------FSRIHVEDIARSVLASLDRPAPGTIYNLCDDDPAPPQDVILHACSLLG---VEPPAEISWDEARASLSPMALGFYADNKRVSN---RRMREELGVELAYPSYRDGLAAIA 278          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A521MC68_9HYPH (SDR family oxidoreductase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MC68_9HYPH)

HSP 1 Score: 177 bits (449), Expect = 3.120e-50
Identity = 133/300 (44.33%), Postives = 162/300 (54.00%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPAR--VFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTP---VSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPA-----AADAAYVSARG--GGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAE 915
            +LFIFG+GY+GL IA  A   G+TV+GTCT   K + L+   GI T LFDGT PL  +   A+   +HVL TI PG  G +P L   A  L ++   +WLGYLS+TGVYGD GG WV E TPP+P   ++  RL AER WQ       AR  +FRL GIYGPGRS +D + A          AR    P    SR+HVADIA    +      P  L N+AD  PA   EV   A  LLG    PA     AA      AR   G ++RV    L+R L   G+ L YP Y  GL A+AE
Sbjct:    4 RLFIFGLGYSGLEIAQLAKASGWTVAGTCTGADKAERLR-AMGIETHLFDGTAPLPAQ---AMDGASHVLCTIAPGPTG-DPALRTCASLLGQT---RWLGYLSTTGVYGDHGGGWVDEDTPPTPGQPRSIERLAAERGWQAMALEAGARLDIFRLPGIYGPGRSTIDQVKAGT--------ARRIDKPGQFFSRVHVADIAGTVLKAMTEPHPGGLYNVADDLPAPNSEVVGFAFTLLGRPVPPAIPWEEAAPTMTAMARSFYGENRRVRNDRLKREL---GVVLRYPTYREGLRAIAE 284          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A7V7FNS9_9PROT (SDR family oxidoreductase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A7V7FNS9_9PROT)

HSP 1 Score: 177 bits (448), Expect = 6.120e-50
Identity = 122/299 (40.80%), Postives = 164/299 (54.85%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQD--SDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGC---AAVPAAADAAYVSARGGGSKRVDGTLLRRMLQAR-GLQLVYPDYESGLAAV--AEERA 924
            +LF FG+GY    +A +    G+ V+GTC    +   L +  GI  FLFDG  PL  E  AA+   TH+LS++PPGADG +PVL  HA  +    RL+W GYLS+TGVYGD GG  V E  P +PT+ + R R  AE  W     +  VP  +FRLAGIYGPGR+ALD + +         G R A     R+HVADIA        A  P  + N+ D  PA+  +V A+A +LLG      +P A  A  +S       R +  +    ++A  G++L YPDY SGL A+  AEE++
Sbjct:    9 RLFCFGLGYCARVLAGALKADGWAVAGTCRKAEERAQLAS-QGIEAFLFDGGGPL--ETAAALAGATHLLSSVPPGADG-DPVLRRHAGDIAAVDRLEWAGYLSTTGVYGDTGGAMVDEEAPLNPTSARRRRRAEAENGWLALYGNRGVPVHIFRLAGIYGPGRNALDQVRSGAAKRIDAPGRRFA-----RVHVADIAAVLKTSMQAPRPGAVYNVCDDFPAAPADVVAYACQLLGVDPPPLIPFAEAAKEMSLMAQSFWRDNRCIDNSRIKAELGVRLGYPDYRSGLKAILMAEEKS 298          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A523FFP5_9PROT (SDR family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FFP5_9PROT)

HSP 1 Score: 176 bits (447), Expect = 6.370e-50
Identity = 119/300 (39.67%), Postives = 155/300 (51.67%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQ--DSDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPVS----RIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAA-DAAYVSARGGG----SKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEE 918
            +LF+FG+GYT   +A    N+G+ V+GTC +    +ALQ+  GI   +FDG +P+  +   A+TS TH+L + PP   G +PVL HH   +     LQWLGYLS+TGVYGD  G WV E TPP+P   + + R TAE+ W       + P  +FRL GIYGPGRSALD + A         G    +   S    RIHV DI            P  + NLAD  PA   +V A AA LLG    P  A + A ++  G       KRV      RM    G+ L YP Y  GL A+  +
Sbjct:    2 RLFVFGLGYTAQHLAAQVQNQGWEVAGTCRTADNQRALQDA-GIDAHIFDGDQPMQ-DAAQALTSATHILVSTPPSERG-DPVLRHHKADIVAGHTLQWLGYLSTTGVYGDHQGGWVDEDTPPTPGNDRGQRRETAEQGWLALHDQHQAPTHIFRLPGIYGPGRSALDAIRA---------GRNQRIAKPSQVFCRIHVDDIVAGLMASMTQPNPGRIYNLADDEPAPPQDVTAFAAGLLGKEPAPLIAFEDAELTPMGRSFYDECKRVRND---RMKNELGITLAYPTYREGLRAILSQ 286          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A1T4NRF4_9HYPH (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4NRF4_9HYPH)

HSP 1 Score: 176 bits (446), Expect = 9.760e-50
Identity = 125/301 (41.53%), Postives = 163/301 (54.15%), Query Frame = 1
Query:   46 SGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPAR--VFRLAGIYGPGRSALDTLVAKDGDMAACAGARDAVTPV-SRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVP-------AAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEE 918
            +G+LF+FG+G+ GL IA  A+ +G++++GTCT+  K   L+   GI   +FDGT     E  A     TH+L TI PG  G   + L   R   R  R  WLGYLS+TGVYGD GGDWV E TPP+PT  ++  RL  E AWQ   +++ A   +FRL GIYGPGRSA+D +      ++  A   D    V SRIHVADIA A         P  + NLAD  PAS  EV A A  LLG    P       A   +A   +    ++RV    ++R L   G+ L YP +  GL A+A E
Sbjct:    2 TGRLFVFGLGFAGLEIAKLALAKGWSITGTCTTPEKAARLR-ARGIEAVVFDGTAAAPAEAFAG---ATHILCTIAPGTTGDPALRL--CRDSFRDAR--WLGYLSTTGVYGDRGGDWVDEATPPAPTQRRSIDRLATEEAWQALGTKLGAATDIFRLPGIYGPGRSAIDQV------LSGTARRIDKPGQVFSRIHVADIATAVLAAMSRGGPGAIYNLADDLPASSAEVTAFACELLGVPRPPLLPWEQVAPTMSAMARSFYAENRRVRNDRMKREL---GVALRYPTFREGLQAIAAE 285          
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Match: A0A1H6GT33_MAGFU (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Magnetospirillum fulvum TaxID=1082 RepID=A0A1H6GT33_MAGFU)

HSP 1 Score: 175 bits (444), Expect = 1.830e-49
Identity = 123/310 (39.68%), Postives = 170/310 (54.84%), Query Frame = 1
Query:   52 KLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDSKLQALQNGYGISTFLFDGTEPL---SIEGVAAITSCTHVLSTIPPGADGTEPVLLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARARLTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVA-------KDGDMAACAGARDAVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARLLGCAAVPAAADAAYVSARG----------GGSKRVDGTLLRRMLQARGLQLVYPDYESGLAAVAEER 921
            K F+FG+GY+G A+A + + RG++V+GT T   +   L+   G+ TF FD   PL   ++EGV AI      LST+PP   G +PV+   A H+Q + R +W+GYLS+TG+YGD  G WV E TPP PT  ++R RL AE+AW+ +   +P  +FRLAGIYGPGRSA++ ++A       K G M             SRIHV DIA++        AP  + NL D  PA   +V  +A  LLG    P   +  +  AR             +KRV     RRM +  G+ L YP Y  GLAA+A+ +
Sbjct:    4 KFFVFGLGYSGKAVARALLARGWSVAGT-TRSGRADDLE---GVETFAFDRDRPLPAGALEGVTAI------LSTVPPDPAG-DPVVAVMAAHMQ-AVRPRWVGYLSTTGLYGDHNGGWVDETTPPDPTQERSRRRLEAEQAWRATG--LPLHLFRLAGIYGPGRSAIEQVLAGTARRINKPGQM------------FSRIHVEDIARSVLTSLDRPAPGTIYNLCDDDPAPPQDVILYACALLGVEPPP---EIGWDEARATLSPMALGFYADNKRVSN---RRMREELGVDLAYPSYRDGLAAIAKRQ 281          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159079 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9P5_9STRA8.390e-222100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4R2PCT9_RHOSA6.210e-5342.81Nucleoside-diphosphate-sugar epimerase n=3 Tax=Rho... [more]
UPI000900CF101.010e-5141.04uncharacterized protein LOC109188901 n=2 Tax=Ipomo... [more]
UPI000E6AC31E1.720e-5143.00SDR family oxidoreductase n=1 Tax=Indioceanicola p... [more]
H8FRN6_MAGML1.660e-5040.07Nucleoside-diphosphate-sugar epimerase n=1 Tax=Mag... [more]
A0A521MC68_9HYPH3.120e-5044.33SDR family oxidoreductase n=1 Tax=Reyranella sp. T... [more]
A0A7V7FNS9_9PROT6.120e-5040.80SDR family oxidoreductase n=2 Tax=Rhodospirillales... [more]
A0A523FFP5_9PROT6.370e-5039.67SDR family oxidoreductase n=1 Tax=Alphaproteobacte... [more]
A0A1T4NRF4_9HYPH9.760e-5041.53Nucleoside-diphosphate-sugar epimerase n=1 Tax=Enh... [more]
A0A1H6GT33_MAGFU1.830e-4939.68Nucleoside-diphosphate-sugar epimerase n=1 Tax=Mag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:727445..728737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159079|e_gw1.8.235.1
DescriptionCOG0451 Nucleoside-diphosphate-sugar epimerases
COG categoryGM
Max annot lvl204441|Rhodospirillales
EggNOG OGsCOG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,2TRDY@28211|Alphaproteobacteria,2JR11@204441|Rhodospirillales
Evalue2.72e-51
Seed ortholog1150626.PHAMO_230016
Hectar predicted targeting categoryother localisation
TranscriptId159401
TrackFilteredModels1
ProteinId159079
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159079gene_2795Tribonema minus UTEX_B_3156 geneContig_8 727445..728737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159079Trimin1|159079|e_gw1.8.235.1Tribonema minus UTEX_B_3156 polypeptideContig_8 727445..728737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2795_3exon_2795_3Tribonema minus UTEX_B_3156 exonContig_8 727445..727731 -
exon_2795_2exon_2795_2Tribonema minus UTEX_B_3156 exonContig_8 728054..728069 -
exon_2795_1exon_2795_1Tribonema minus UTEX_B_3156 exonContig_8 728090..728737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2795CDS_2795Tribonema minus UTEX_B_3156 CDSContig_8 728090..728737 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Trimin1|159079|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=951bp|location=Sequence derived from alignment at Contig_8:727445..728737- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGCATACAGAGGCAAGCAGGAGCAATGGCTCTGATGCATCTGG
AAAGCTTTTTATCTTTGGAGTGGGGTATACTGGCCTGGCTATTGCTGTCT
CGGCCATGAATCGGGGCTACACTGTCAGTGGCACCTGCACCAGCGACAGC
AAGCTGCAGGCGCTGCAGAATGGCTACGGCATCTCAACCTTCCTCTTCGA
CGGGACGGAACCGCTCAGCATCGAGGGAGTCGCAGCCATCACCAGCTGCA
CACACGTGCTGTCCACCATCCCGCCGGGAGCAGACGGAACGGAACCCGTC
CTGCTCCACCACGCGAGGCACCTGCAGCGATCCACCCGCCTGCAGTGGCT
GGGGTACCTCTCCAGCACAGGCGTGTACGGCGATGCGGGAGGGGACTGGG
TGACAGAGCACACGCCGCCGAGCCCGACCACCCTCAAGGCGCGCGCGCGC
CTGACCGCTGAGCGCGCCTGGCAAGACTCGGACTCCCGAGTCCCCGCGCG
CGTGTTCCGACTCGCTGGCATCTACGGCCCGGGCCGCAGCGCGCTGGACA
CACTCGTGGCGAAGGACGGGGACATGGCCGCCTGCGCAGGCGCGCGCGAC
GCCGTCACCCCCGTCTCGCGCATCCACGTCGCCGACATTGCGCAGGCCCG
CTGCCGCGGCGCCCCGGCGGCGGCGCCGCCGCTGCTCGTCAACCTCGCGG
ACGCGCGGCCGGCGTCGCGCCACGAAGTCTTCGCGCACGCGGCACGGCTC
CTGGGCTGCGCGGCGGTGCCGGCGGCGGCGGACGCGGCGTACGTGAGCGC
GCGCGGCGGCGGCAGCAAGCGCGTGGACGGCACGCTGCTGCGGCGCATGC
TACAGGCGCGCGGTCTGCAGCTCGTCTACCCGGACTACGAGAGCGGGCTG
GCGGCGGTCGCGGAGGAGCGCGCATTCCGCATCAGCAACCTGCAGTCCTG
A
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protein sequence of jgi.p|Trimin1|159079

>Trimin1|159079|e_gw1.8.235.1 ID=Trimin1|159079|e_gw1.8.235.1|Name=jgi.p|Trimin1|159079|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=317bp
MAVHTEASRSNGSDASGKLFIFGVGYTGLAIAVSAMNRGYTVSGTCTSDS
KLQALQNGYGISTFLFDGTEPLSIEGVAAITSCTHVLSTIPPGADGTEPV
LLHHARHLQRSTRLQWLGYLSSTGVYGDAGGDWVTEHTPPSPTTLKARAR
LTAERAWQDSDSRVPARVFRLAGIYGPGRSALDTLVAKDGDMAACAGARD
AVTPVSRIHVADIAQARCRGAPAAAPPLLVNLADARPASRHEVFAHAARL
LGCAAVPAAADAAYVSARGGGSKRVDGTLLRRMLQARGLQLVYPDYESGL
AAVAEERAFRISNLQS*
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mRNA from alignment at Contig_8:727445..728737-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Trimin1|159079|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1293bp|location=Sequence derived from alignment at Contig_8:727445..728737- (Tribonema minus UTEX_B_3156 )
ATGGCAGTGCATACAGAGGCAAGCAGGAGCAATGGCTCTGATGCATCTGG AAAGCTTTTTATCTTTGGAGTGGGGTATACTGGCCTGGCTATTGCTGTCT CGGCCATGAATCGGGGCTACACTGTCAGTGGCACCTGCACCAGCGACAGC AAGCTGCAGGCGCTGCAGAATGGCTACGGCATCTCAACCTTCCTCTTCGA CGGGACGGAACCGCTCAGCATCGAGGGAGTCGCAGCCATCACCAGCTGCA CACACGTGCTGTCCACCATCCCGCCGGGAGCAGACGGAACGGAACCCGTC CTGCTCCACCACGCGAGGCACCTGCAGCGATCCACCCGCCTGCAGTGGCT GGGGTACCTCTCCAGCACAGGCGTGTACGGCGATGCGGGAGGGGACTGGG TGACAGAGCACACGCCGCCGAGCCCGACCACCCTCAAGGCGCGCGCGCGC CTGACCGCTGAGCGCGCCTGGCAAGACTCGGACTCCCGAGTCCCCGCGCG CGTGTTCCGACTCGCTGGCATCTACGGCCCGGGCCGCAGCGCGCTGGACA CACTCGTGGCGAAGGACGGGGACATGGCCGCCTGCGCAGGCGCGCGCGAC GCCGTCACCCCCGTCTCGCGCATCCACGTCGCCGACATTGCGCAGGCCGT CGTCGAGGCCTCCATGAGCGCTGCCGCGGCGCCCGTTGCCAAAGGCGTCA ACGCCAGCGGCGCCGCGCGCGCCGCCGGCGCCGCCGCCACCGGCGCGGCT GCCGCCGCCAACTTCGCCGCCACCGCTGCCTTCAACGCCGCTGCCGCGGC CGGCGGCGCCATCGGCGGGGGTGCCCGCGCCGCCGCTGCCGGCGCCGCCG CCGCTGCTGCCGGCGCCGCCGCCACCGGCGCTGCGGCGACCCTCGATGCT GCCGTTGCAGCTGCATCTGTCAGCGCCGCCGTCGCTTCACTGGATGAATC CGCCGCTGCTGCCGATGACGCTGCTGCCGGCGACGCGGCAGCAGCAGCAG CGGCAGCGGCGGCGGCGCCGCCGCTGCTCGTCAACCTCGCGGACGCGCGG CCGGCGTCGCGCCACGAAGTCTTCGCGCACGCGGCACGGCTCCTGGGCTG CGCGGCGGTGCCGGCGGCGGCGGACGCGGCGTACGTGAGCGCGCGCGGCG GCGGCAGCAAGCGCGTGGACGGCACGCTGCTGCGGCGCATGCTACAGGCG CGCGGTCTGCAGCTCGTCTACCCGGACTACGAGAGCGGGCTGGCGGCGGT CGCGGAGGAGCGCGCATTCCGCATCAGCAACCTGCAGTCCTGA
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Coding sequence (CDS) from alignment at Contig_8:727445..728737-

>mRNA_2795 ID=mRNA_2795|Name=jgi.p|Trimin1|159079|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=951bp|location=Sequence derived from alignment at Contig_8:727445..728737- (Tribonema minus UTEX_B_3156 )
ATGGCAGTGCATACAGAGGCAAGCAGGAGCAATGGCTCTGATGCATCTGG
AAAGCTTTTTATCTTTGGAGTGGGGTATACTGGCCTGGCTATTGCTGTCT
CGGCCATGAATCGGGGCTACACTGTCAGTGGCACCTGCACCAGCGACAGC
AAGCTGCAGGCGCTGCAGAATGGCTACGGCATCTCAACCTTCCTCTTCGA
CGGGACGGAACCGCTCAGCATCGAGGGAGTCGCAGCCATCACCAGCTGCA
CACACGTGCTGTCCACCATCCCGCCGGGAGCAGACGGAACGGAACCCGTC
CTGCTCCACCACGCGAGGCACCTGCAGCGATCCACCCGCCTGCAGTGGCT
GGGGTACCTCTCCAGCACAGGCGTGTACGGCGATGCGGGAGGGGACTGGG
TGACAGAGCACACGCCGCCGAGCCCGACCACCCTCAAGGCGCGCGCGCGC
CTGACCGCTGAGCGCGCCTGGCAAGACTCGGACTCCCGAGTCCCCGCGCG
CGTGTTCCGACTCGCTGGCATCTACGGCCCGGGCCGCAGCGCGCTGGACA
CACTCGTGGCGAAGGACGGGGACATGGCCGCCTGCGCAGGCGCGCGCGAC
GCCGTCACCCCCGTCTCGCGCATCCACGTCGCCGACATTGCGCAGGCCCG
CTGCCGCGGCGCCCCGGCGGCGGCGCCGCCGCTGCTCGTCAACCTCGCGG
ACGCGCGGCCGGCGTCGCGCCACGAAGTCTTCGCGCACGCGGCACGGCTC
CTGGGCTGCGCGGCGGTGCCGGCGGCGGCGGACGCGGCGTACGTGAGCGC
GCGCGGCGGCGGCAGCAAGCGCGTGGACGGCACGCTGCTGCGGCGCATGC
TACAGGCGCGCGGTCTGCAGCTCGTCTACCCGGACTACGAGAGCGGGCTG
GCGGCGGTCGCGGAGGAGCGCGCATTCCGCATCAGCAACCTGCAGTCCTG
A
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