mRNA_2759 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A835YMD5_9STRA (Ran-binding protein 9-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD5_9STRA) HSP 1 Score: 235 bits (599), Expect = 1.110e-78 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR Sbjct: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 108
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI) HSP 1 Score: 154 bits (388), Expect = 3.670e-41 Identity = 70/108 (64.81%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324 MPGWV+HSYGYHGDDG+ FG KT W TW +GDVIGCG D+ R +IWYTRNG LLGD F V E L PVVGFHSNGE VRINFG+ PF Y GP + VL R Sbjct: 2809 MPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDSVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAYEGPEVVISPAVLAER 2916
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE) HSP 1 Score: 153 bits (386), Expect = 6.830e-41 Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324 MPGWV+HSYGYHGDDG+ FG KT W TW +GDVIGCG D R +IWYTRNG LLGD F V E L PVVGFHSNGE VRINFG+ PF Y GP + VL R Sbjct: 2550 MPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDPVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAYEGPEVVISPAVLAER 2657
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A482SYR9_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYR9_9ARCH) HSP 1 Score: 119 bits (297), Expect = 6.850e-29 Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGF---HSNGERVRINFGLTPFVY 279 MPGW+ HSYGYHGDDG+K+G + T G + + GDVIGCG D + R+I+YTRNG LLG F N+ +D L PV+GF H + +V INFGL PF+Y Sbjct: 1570 MPGWISHSYGYHGDDGKKYGEHSTSGDFPLFEVGDVIGCGFDKDSRSIFYTRNGVLLGVGFENIEDDKLWPVIGFSNRHDDLAKVSINFGLEPFMY 1665
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A7R9TBD1_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TBD1_9VIRI) HSP 1 Score: 92.0 bits (227), Expect = 5.420e-21 Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWAT-WAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324 PGW +SYGYHGDDG+KF N T + + GDV+G G++T R I++TRNG LG AF V +L P G HS E VR+NFG PF+Y +V A V +R Sbjct: 85 QPGWDPNSYGYHGDDGRKFHNNGTGEPYGPHFGAGDVVGAGINTADRTIFFTRNGVDLGVAFEGVRSNLR-PSFGLHSKDEEVRVNFGQEPFMY-----DVDAAVRRSR 187
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A261Y7C1_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y7C1_9FUNG) HSP 1 Score: 95.9 bits (237), Expect = 8.020e-21 Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGR--WATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279 +PGW SYGYHGDDGQKF + G+ + +GDVIGCGV+ R+I+YT+NG LG AF N+ + L P +G S GE +INFG F + Sbjct: 289 LPGWEPDSYGYHGDDGQKFSSRSEKGKEYGPKYTKGDVIGCGVNFVDRSIFYTKNGKHLGTAFENIIKRPLYPCIGMRSTGEEAKINFGQRKFKF 383
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A8J9WNV4_9CHLO (Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNV4_9CHLO) HSP 1 Score: 95.1 bits (235), Expect = 1.260e-20 Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWAT-WAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279 PGW +HSYGYHGDDG+KF A+ + ++ GDVIG G+ +R+ I++T+NG LG AF +T+ L P +G HS GE + +NFG +PF + Sbjct: 104 QPGWEQHSYGYHGDDGKKFHASGQGEDYGPHFSAGDVIGAGIHIQRQEIFFTKNGKNLGTAFRGLTQLPLYPTIGLHSPGECIVVNFGASPFAF 197
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A8H5H5S3_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5H5S3_9AGAR) HSP 1 Score: 95.1 bits (235), Expect = 1.510e-20 Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWA-TWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDL-LCPVVGFHSNGERVRINFGLTPFVY 279 +PGW +S+GYHGDDG F A KT R+ T+ GD+IGCG+D ++T+NGTLLG F N+ +D+ + P +G GE VR+NFG PF + Sbjct: 320 LPGWEINSWGYHGDDGCSFAAEKTGTRYGPTFGTGDIIGCGIDFTSHRAFFTKNGTLLGPVFDNIGKDIDIYPSIGLRHAGEAVRVNFGHEPFKF 414
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A0L6WRJ1_9AGAR (Ran-binding protein 10 n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WRJ1_9AGAR) HSP 1 Score: 94.7 bits (234), Expect = 2.030e-20 Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKFGANKTPGRWA-TWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDL-LCPVVGFHSNGERVRINFGLTPFVY 279 +PGW +S+GYHGDDG F A K ++ T+ GD+IGCGVD A ++TRNGTL+G F N+ +++ L P +G GE VR+NFG PF + Sbjct: 231 LPGWEPNSWGYHGDDGCSFAAEKNGTKYGPTFGTGDIIGCGVDFTTHAAFFTRNGTLIGPVFDNIGKNVDLYPSIGMRHTGEAVRVNFGHEPFKF 325
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A1X2HP79_SYNRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HP79_SYNRA) HSP 1 Score: 93.2 bits (230), Expect = 6.920e-20 Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 1 MPGWVEHSYGYHGDDGQKF---GANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279 +PGW ++S+GYHGDDG F G KT G T GD +GCG++ + +YT+NGT+LG AF N++ L P +G + GE+V +NFG PFV+ Sbjct: 160 LPGWDQNSWGYHGDDGHSFEGSGTGKTFGPCFT--TGDTVGCGINMADNSAFYTKNGTMLGTAFRNISNIPLYPCIGLRTPGEQVTVNFGQAPFVF 253 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGGGGTGGGTGGAGCACTCGTACGGCTACCACGGGGATGACGGGCAback to top protein sequence of jgi.p|Trimin1|129094 >Trimin1|129094|gw1.8.8.1 ID=Trimin1|129094|gw1.8.8.1|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYback to top mRNA from alignment at Contig_8:395581..397683+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2103bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_8:395581..397683+ >mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )back to top |