mRNA_2759 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129094
Unique NamemRNA_2759
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A835YMD5_9STRA (Ran-binding protein 9-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD5_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.110e-78
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324
            MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR
Sbjct:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 108          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.670e-41
Identity = 70/108 (64.81%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324
            MPGWV+HSYGYHGDDG+ FG  KT   W TW +GDVIGCG D+ R +IWYTRNG LLGD F  V E  L PVVGFHSNGE VRINFG+ PF Y GP   +   VL  R
Sbjct: 2809 MPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDSVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAYEGPEVVISPAVLAER 2916          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.830e-41
Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324
            MPGWV+HSYGYHGDDG+ FG  KT   W TW +GDVIGCG D  R +IWYTRNG LLGD F  V E  L PVVGFHSNGE VRINFG+ PF Y GP   +   VL  R
Sbjct: 2550 MPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDPVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAYEGPEVVISPAVLAER 2657          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A482SYR9_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYR9_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 6.850e-29
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGF---HSNGERVRINFGLTPFVY 279
            MPGW+ HSYGYHGDDG+K+G + T G +  +  GDVIGCG D + R+I+YTRNG LLG  F N+ +D L PV+GF   H +  +V INFGL PF+Y
Sbjct: 1570 MPGWISHSYGYHGDDGKKYGEHSTSGDFPLFEVGDVIGCGFDKDSRSIFYTRNGVLLGVGFENIEDDKLWPVIGFSNRHDDLAKVSINFGLEPFMY 1665          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A7R9TBD1_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TBD1_9VIRI)

HSP 1 Score: 92.0 bits (227), Expect = 5.420e-21
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWAT-WAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEVQAPVLEAR 324
             PGW  +SYGYHGDDG+KF  N T   +   +  GDV+G G++T  R I++TRNG  LG AF  V  +L  P  G HS  E VR+NFG  PF+Y     +V A V  +R
Sbjct:   85 QPGWDPNSYGYHGDDGRKFHNNGTGEPYGPHFGAGDVVGAGINTADRTIFFTRNGVDLGVAFEGVRSNLR-PSFGLHSKDEEVRVNFGQEPFMY-----DVDAAVRRSR 187          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A261Y7C1_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y7C1_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 8.020e-21
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGR--WATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279
            +PGW   SYGYHGDDGQKF +    G+     + +GDVIGCGV+   R+I+YT+NG  LG AF N+ +  L P +G  S GE  +INFG   F +
Sbjct:  289 LPGWEPDSYGYHGDDGQKFSSRSEKGKEYGPKYTKGDVIGCGVNFVDRSIFYTKNGKHLGTAFENIIKRPLYPCIGMRSTGEEAKINFGQRKFKF 383          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A8J9WNV4_9CHLO (Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNV4_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.260e-20
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWAT-WAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279
             PGW +HSYGYHGDDG+KF A+     +   ++ GDVIG G+  +R+ I++T+NG  LG AF  +T+  L P +G HS GE + +NFG +PF +
Sbjct:  104 QPGWEQHSYGYHGDDGKKFHASGQGEDYGPHFSAGDVIGAGIHIQRQEIFFTKNGKNLGTAFRGLTQLPLYPTIGLHSPGECIVVNFGASPFAF 197          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A8H5H5S3_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5H5S3_9AGAR)

HSP 1 Score: 95.1 bits (235), Expect = 1.510e-20
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWA-TWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDL-LCPVVGFHSNGERVRINFGLTPFVY 279
            +PGW  +S+GYHGDDG  F A KT  R+  T+  GD+IGCG+D      ++T+NGTLLG  F N+ +D+ + P +G    GE VR+NFG  PF +
Sbjct:  320 LPGWEINSWGYHGDDGCSFAAEKTGTRYGPTFGTGDIIGCGIDFTSHRAFFTKNGTLLGPVFDNIGKDIDIYPSIGLRHAGEAVRVNFGHEPFKF 414          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A0L6WRJ1_9AGAR (Ran-binding protein 10 n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WRJ1_9AGAR)

HSP 1 Score: 94.7 bits (234), Expect = 2.030e-20
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWA-TWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDL-LCPVVGFHSNGERVRINFGLTPFVY 279
            +PGW  +S+GYHGDDG  F A K   ++  T+  GD+IGCGVD    A ++TRNGTL+G  F N+ +++ L P +G    GE VR+NFG  PF +
Sbjct:  231 LPGWEPNSWGYHGDDGCSFAAEKNGTKYGPTFGTGDIIGCGVDFTTHAAFFTRNGTLIGPVFDNIGKNVDLYPSIGMRHTGEAVRVNFGHEPFKF 325          
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Match: A0A1X2HP79_SYNRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HP79_SYNRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.920e-20
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 MPGWVEHSYGYHGDDGQKF---GANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 279
            +PGW ++S+GYHGDDG  F   G  KT G   T   GD +GCG++    + +YT+NGT+LG AF N++   L P +G  + GE+V +NFG  PFV+
Sbjct:  160 LPGWDQNSWGYHGDDGHSFEGSGTGKTFGPCFT--TGDTVGCGINMADNSAFYTKNGTMLGTAFRNISNIPLYPCIGLRTPGEQVTVNFGQAPFVF 253          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129094 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMD5_9STRA1.110e-78100.00Ran-binding protein 9-like protein (Fragment) n=1 ... [more]
D7FVC4_ECTSI3.670e-4164.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE6.830e-4164.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SYR9_9ARCH6.850e-2956.25B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A7R9TBD1_9VIRI5.420e-2146.79Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A261Y7C1_9FUNG8.020e-2148.42Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8J9WNV4_9CHLO1.260e-2046.81Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi T... [more]
A0A8H5H5S3_9AGAR1.510e-2047.37Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
A0A0L6WRJ1_9AGAR2.030e-2047.37Ran-binding protein 10 n=1 Tax=Termitomyces sp. J1... [more]
A0A1X2HP79_SYNRA6.920e-2045.83Concanavalin A-like lectin/glucanase domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:395581..397683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129094|gw1.8.8.1
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
KEGG ModuleM00353
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG koko:K10594,ko:K12864
EC2.3.2.26
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Preferred nameHERC1
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
Evalue6.02e-42
Seed ortholog2880.D7FVC4
Hectar predicted targeting categoryother localisation
TranscriptId129416
TrackFilteredModels1
ProteinId129094
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129094gene_2759Tribonema minus UTEX_B_3156 geneContig_8 395581..397683 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2759_1exon_2759_1Tribonema minus UTEX_B_3156 exonContig_8 395581..395726 +
exon_2759_2exon_2759_2Tribonema minus UTEX_B_3156 exonContig_8 397506..397683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2759CDS_2759Tribonema minus UTEX_B_3156 CDSContig_8 395581..395726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129094Trimin1|129094|gw1.8.8.1Tribonema minus UTEX_B_3156 polypeptideContig_8 395581..397683 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGGGTGGGTGGAGCACTCGTACGGCTACCACGGGGATGACGGGCA
GAAGTTCGGGGCCAACAAGACCCCCGGGCGGTGGGCCACGTGGGCGGAGG
GGGACGTCATCGGGTGCGGCGTCGACACGGAGCGCCGCGCCATATGGTAC
ACGCGCAACGGCACGCTGCTGGGCGACGCCTTTGCCAACGTCACCGAGGA
CCTCCTGTGCCCGGTGGTGGGGTTCCACAGCAACGGCGAGCGCGTGCGCA
TCAACTTTGGCCTCACGCCGTTCGTCTACGCGGGCCCAGGGGCGGAGGTG
CAGGCGCCCGTGCTGGAGGCGCGC
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protein sequence of jgi.p|Trimin1|129094

>Trimin1|129094|gw1.8.8.1 ID=Trimin1|129094|gw1.8.8.1|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWY
TRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVYAGPGAEV
QAPVLEAR
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mRNA from alignment at Contig_8:395581..397683+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2103bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )
ATGCCGGGGTGGGTGGAGCACTCGTACGGCTACCACGGGGATGACGGGCA GAAGTTCGGGGCCAACAAGACCCCCGGGCGGTGGGCCACGTGGGCGGAGG GGGACGTCATCGGGTGCGGCGTCGACACGGAGCGCCGCGCCATATGGTAA ACCCTGACCCTAACCCTGAGTTGGTAGCCCCAGCCCTAGCCCTAACCTTA GGACCAGCCCTAGCCCTAACCCTAGGACTAGCCCAACCTTGGGTGCGGCG TCGACACGGAGCGCCGCGTCATATGGTAAATCCTAACCTTACGACGGTAG CCCTAGCCCGGACCCTAGGGACTACCCCAAACCTTGGGTGCGGCAAACAT GGTAGAGCCTGACCCTAAGACGGTAGCCCTGGCGCTAACCCTAGCCCTAA TCCTAGGACTAACCCCAACCTGGGGTGCGGCATCGACGCAGAGCGCCGCG CCATTTGGTAAAGCCTGACCCTAAGGCGGTAACCCTGGCCCCAATCTAGC CTTAATTCTAGGACCAACCTCAGTCTTGGGTGCGGCGTCCACGCGGAGCA CCCCGCGCCAACCCTGCAACGATGACCCTAGCCCTAACCCTAGGACACGC CCTGTGGTAACCCTTAGGGGGAGCCCTAGCCCTAGGCAAGGACTAACCTT GACCGTAGGACTACCCCCATCCTAGGCCGTAGCCGTAGCACTAGCCCTAA CCCTAGGACCAACCTTAACCCTAGGATGGGACATGCCCGTGCACGTTGCA GCCGCAGCACCACTCCGATGCGTGACTGACTGTAACGGGCTAAGATGTCC ACTGCTTCTGACAGTCGAGGAGAGTTTTTATGAGCCATGCGCAAGCACAA CAGCGAAATGCCCCCTCCCCTCACTCCTCCCCAATCTGCAGTGTCATCCA GCGCACAAAGATGCTGCGAGTGCGGGCAAAATGCAAGTCCAACGACAGCT ACATGCGCAGCCCCGCAACTTCAACTGCACATCTCAACGAGATTCTGCGG GACCCCTGCCAAACAAGTACAGATACGCTCCTCGCGCCTCTGACCGCGAC TGCGCGATGCGAATGCTGTAATTGCCGCCGCTGGTGTACACCCGCAACAG AGCACTGACGCCACGCCAGTCATACCTACATACCCTGACCGCAACCTATG CAATGCGAATACGCGCATCGCCCCTTAGGTTCTCAGACGCAACAGAGCGC TGACTCCACGCCAATTATACCTACATACCCTGATAACGATCGTGCGATGC GACCGCAGGTACACGCGCAACGGCACGCTGCCGGGCGACGCCTTTGCCAA TCATGCATACATGCCCTGACCGCTACCGTGCGACGCGACTGCCTCCGCAT TGCCCCTTAGGTACGCAGACGCAACAGAGCACTGACTCCACACCCCTTAT ACCTACATACCCTGACCGCGAACGTGCGACGCGGCTGCATGTACACGCGC AACGCCGCGCTGCTGGGCGACGCCTTCAACGGAGCACTTACTCCACGCCA GTAATACATACGCACCCTGAAAGCAACCTATGCAATGCGCATGCGCGCAC CGCCGCCGCAGGTACACGCGCAACGGCGCGCTGCTGGGCGACGCCTTCAC CAGTCATACATACATGCGCTGACCGCCACTTGAGACGCGACTGCCTCCGC ATCGCCGCCACCAGTACTTGCGCAATGGCACTGACTCCACGCCAATCATA ATCATACATACATACCCTGACCGCGACCGTGCGACGCGACTGCAGGTACA CGCGCAACGGCACGCTGCTGGGCGACGCCTTTGCCAATCATACATACATG CCCTGACCTTGACCGTGCGACGCAAATGCCCGCGTCGCCCCTTAGGTACA CAGCCGCCACAGAGCACTGAATCCACGCCCCTTATACCTACATACCCTGA CCACAACCGTGCGATGCGATTGCAGGTACACGCGCAACGGCACGCTGCTG GGCGACGCCTTTGCCAACGTCACCGAGGACCTCCTGTGCCCGGTGGTGGG GTTCCACAGCAACGGCGAGCGCGTGCGCATCAACTTTGGCCTCACGCCGT TCGTCTACGCGGGCCCAGGGGCGGAGGTGCAGGCGCCCGTGCTGGAGGCG CGC
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Coding sequence (CDS) from alignment at Contig_8:395581..397683+

>mRNA_2759 ID=mRNA_2759|Name=jgi.p|Trimin1|129094|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_8:395581..397683+ (Tribonema minus UTEX_B_3156 )
ATGCCGGGGTGGGTGGAGCACTCGTACGGCTACCACGGGGATGACGGGCA
GAAGTTCGGGGCCAACAAGACCCCCGGGCGGTGGGCCACGTGGGCGGAGG
GGGACGTCATCGGGTGCGGCGTCGACACGGAGCGCCGCGCCATATGGTAC
ACGCGCAACGGCACGCTGCTGGGCGACGCCTTTGCCAACGTCACCGAGGA
CCTCCTGTGCCCGGTGGTGGGGTTCCACAGCAACGGCGAGCGCGTGCGCA
TCAACTTTGGCCTCACGCCGTTCGTCTACGCGGGCCCAGGGGCGGAGGTG
CAGGCGCCCGTGCTGGAGGCGCGC
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