mRNA_2757 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134692
Unique NamemRNA_2757
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A835YMS0_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.170e-82
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY 348
            VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY
Sbjct:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY 116
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 2.660e-55
Identity = 90/116 (77.59%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY 348
            ++V VS G+AAWEF+L+ DS +DECSVFG A KP +SRCYNSS SLWMRRAYNGVLY RGRQLP+ ++MSKIHPGDVVRCE+DMDEGTLRF+VNGE QDGGFD +EGEV+PCAGSY
Sbjct: 1301 LDVGVSHGKAAWEFVLEDDSPSDECSVFGIATKPPYSRCYNSSQSLWMRRAYNGVLYNRGRQLPAGQSMSKIHPGDVVRCEVDMDEGTLRFSVNGEKQDGGFDDVEGEVFPCAGSY 1416
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 6.110e-40
Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRF 273
            ++V VS G+AAWEFLL+ DS +DECSVFG A +P +SRCYNSS SLWMRRAYNGVLY RGRQLP+ ++MSKIHPGDVVRCE+DMDEGTLRF
Sbjct: 1208 LDVGVSHGKAAWEFLLEDDSPSDECSVFGIATRPPYSRCYNSSQSLWMRRAYNGVLYNRGRQLPAGQSMSKIHPGDVVRCEVDMDEGTLRF 1298
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A482SYR9_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYR9_9ARCH)

HSP 1 Score: 134 bits (338), Expect = 2.790e-34
Identity = 66/111 (59.46%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:   16 SAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY 348
            S  RAAWEFLL+ DS  DECSVFGAA  PL SRCY+SS  LWMRR+YNG +YC+G+   +   M KIHPGDVVR E D   GTL ++VNG   + GF  I  EV+P  GSY
Sbjct:  275 SGQRAAWEFLLETDSMADECSVFGAARMPLSSRCYSSSSDLWMRRSYNGYMYCQGQT--TGNNMDKIHPGDVVRIEFDGSLGTLSYSVNGSELEVGFSDIVDEVHPACGSY 383
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A662YH68_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH68_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.950e-27
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  VS+G+A+W+F LD D+  DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SR++ K+HPGD+V+ ++DM EGTL F +NG      F  + G EV+P    Y
Sbjct:  602 VNCGVSSGKASWKFRLDTDTQDDEMTCFGAAILPVTVNGYDSSPSLWMLRGYNGNLYARGHKL--SRSIGKVHPGDIVQIDVDMSEGTLAFKINGTEYGVVFTDLAGHEVHPAVSFY 716
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A662Y1J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1J4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.860e-26
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  VS+G+A+W+F LD D+  DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SR++ K+HPGD+++ ++DM+EGTL + +NG      F  + G EV+P    Y
Sbjct:  702 VNCGVSSGKASWKFRLDTDTQDDEMTCFGAAILPVTVNGYDSSPSLWMLRGYNGNLYARGHKL--SRSIGKVHPGDIIQIDVDMNEGTLAYKINGTEHGVVFTDLAGHEVHPAVSFY 816
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: W2PZ37_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PZ37_PHYPN)

HSP 1 Score: 112 bits (280), Expect = 1.860e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  +S+G+A+W+F LD D+  DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SRT+ K+HPGD+V+ ++DM EGTL + +NG      F  + G EV+P    Y
Sbjct:  560 VNCGISSGKASWKFRLDTDTQDDEMTCFGAAILPVTVNGYDSSPSLWMLRGYNGNLYARGHKL--SRTIGKVHPGDIVQVDIDMGEGTLAYKINGTDYGVVFTDLVGHEVHPAVSFY 674
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A329SYJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SYJ1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.540e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  +S+G+A+W+F LD D+  DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SRT+ K+HPGD+V+ ++DM EGTL + +NG      F  + G EV+P    Y
Sbjct:  560 VNSGISSGKASWKFRLDTDTQDDEMTCFGAAILPVTVNGYDSSPSLWMLRGYNGNLYARGHKL--SRTIGKVHPGDIVQVDVDMGEGTLAYKINGTDYGVVFTDLAGHEVHPAVSFY 674
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: G5A2G8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2G8_PHYSP)

HSP 1 Score: 112 bits (279), Expect = 2.540e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  +S+G+A+W+F LD D+  DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SRT+ K+HPGD+V+ ++DM EGTL + +NG      F  + G EV+P    Y
Sbjct: 1331 VNCGISSGKASWKFRLDTDTQDDEMTCFGAAILPVTVSGYDSSPSLWMLRGYNGNLYARGHKL--SRTIGKVHPGDIVQVDVDMGEGTLAYKINGTDYGVVFTDLAGHEVHPAVSFY 1445
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BLAST of jgi.p|Trimin1|134692 vs. uniprot
Match: A0A1V9YRH3_9STRA (HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRH3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.410e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEG-EVYPCAGSY 348
            VN  +S G+A+W+F LD D+A DE + FGAA  P+    Y+SSPSLWM R YNG LY RG +L  SR++ K+HPGD+V+ ++DM  GT+ +A+NG      F  + G EVYP    Y
Sbjct:  518 VNSPISTGKASWKFRLDNDTADDEMTCFGAAILPVTVSGYDSSPSLWMLRGYNGNLYARGHKL--SRSIGKVHPGDIVQIDVDMSAGTMSYAINGTEFGVVFTDLAGHEVYPAVSFY 632
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134692 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMS0_9STRA2.170e-82100.00B30.2/SPRY domain-containing protein (Fragment) n=... [more]
D7FVC4_ECTSI2.660e-5577.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE6.110e-4076.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SYR9_9ARCH2.790e-3459.46B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A662YH68_9STRA9.950e-2749.57Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662Y1J4_9STRA1.860e-2647.86Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
W2PZ37_PHYPN1.860e-2648.72Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A329SYJ1_9STRA2.540e-2648.72Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
G5A2G8_PHYSP2.540e-2648.72Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A1V9YRH3_9STRA3.410e-2648.72HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:381152..382364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134692|gw1.8.76.1
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
KEGG ModuleM00353
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG koko:K10594,ko:K12864
EC2.3.2.26
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Preferred nameHERC1
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
Evalue4.35e-56
Seed ortholog2880.D7FVC4
Hectar predicted targeting categoryother localisation
TranscriptId135014
TrackFilteredModels1
ProteinId134692
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134692gene_2757Tribonema minus UTEX_B_3156 geneContig_8 381152..382364 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2757_1exon_2757_1Tribonema minus UTEX_B_3156 exonContig_8 381152..381364 +
exon_2757_2exon_2757_2Tribonema minus UTEX_B_3156 exonContig_8 382230..382364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2757CDS_2757Tribonema minus UTEX_B_3156 CDSContig_8 381152..381364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134692Trimin1|134692|gw1.8.76.1Tribonema minus UTEX_B_3156 polypeptideContig_8 381152..382364 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Trimin1|134692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_8:381152..382364+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCAACGTGTGCGTATCTGCGGGGCGCGCCGCGTGGGAGTTCCTGCTGGA
CGCCGACAGCGCCACGGACGAGTGCAGCGTCTTCGGCGCCGCCGCCAAGC
CGCTGCACTCGCGCTGCTACAACTCGAGCCCGTCGCTGTGGATGCGGCGC
GCGTACAACGGCGTCCTGTACTGCCGCGGGCGCCAGCTGCCGAGCTCACG
CACCATGTCCAAGATCCATCCCGGCGACGTCGTGCGCTGCGAGCTGGACA
TGGACGAGGGCACGCTGCGCTTTGCCGTCAATGGCGAGGCTCAGGATGGC
GGCTTTGACGGCATCGAGGGGGAGGTGTACCCCTGCGCTGGCAGTTAC
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protein sequence of jgi.p|Trimin1|134692

>Trimin1|134692|gw1.8.76.1 ID=Trimin1|134692|gw1.8.76.1|Name=jgi.p|Trimin1|134692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRR
AYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDG
GFDGIEGEVYPCAGSY
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mRNA from alignment at Contig_8:381152..382364+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Trimin1|134692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1213bp|location=Sequence derived from alignment at Contig_8:381152..382364+ (Tribonema minus UTEX_B_3156 )
GTCAACGTGTGCGTATCTGCGGGGCGCGCCGCGTGGGAGTTCCTGCTGGA
CGCCGACAGCGCCACGGACGAGTGCAGCGTCTTCGGCGCCGCCGCCAAGC
CGCTGCACTCGCGCTGCTACAACTCGAGCCCGTCGCTGTGGATGCGGCGC
GCGTACAACGGCGTCCTGTACTGCCGCGGGCGCCAGCTGCCGAGCTCACG
CACCATGTCCAAGGTGAGTATGTATGGGTATGCATGGGAATTAAGTGTGA
GCGCGCGTTTTGGCACGGCTGTAATTGCGTTCTGTACTGCTGCGGGCGCC
AGCTGCCGAGCTCGCGCACCATGTCCAAGCTAAGTAATGGGGGGGGGGGG
GGGGGGGGGTATGTATGAGTACGCATGGGTATGTACAGGTGTGAACCGTC
AGCGCGCGTTTCAGCTCAGCTGTAACGGCATCCTGTACTGCCGTGGGCGC
CAGCTGCCGAGGTCTCACACCATGTCCACGTCAAGTTCAAGGGCATGGGT
AGAAATGGCTATGTTTGGTCCTTTCTTCGACCTGATTGCGGCGTTTGCAA
TGTCGTGCTGCCTGTAGGCCTAGCACTCCCTGTAGTGTTCAGTTTCTTAA
ACGCAATGCAGACCAGATTGCTGCATAGGGTGCAAGCCCTACACGAACGC
AAGTCCGCGAGTACTGCTCACCCTGCTGGTTCGTTGCGGCTCGCAGATCC
AACCCGCCTCTGGGGCCTTGATTGACTCTAAGATCATCAGTACGTCTCCC
TGTGCTGAATTAGGCCTTCATGAATACAAGCCCGTCGGTCCTTCTTAATG
CGCTGGTTCCTTGCGAATCGCAGATCCATGCGGGCGACAATACTCCTCAA
CGTGCTGGTCTCTTGAGGCCTTCATGATCACAAGCCCATCAGCGCCACTC
AATGTGCTGCTTCCCTGCGAGTTCTCTGCGAGGCGCAGATCCATCCGGGC
GTCGTCGTGCGGCCTTCATTAATACAAGCCCATCAGTACTTCTCAACGTC
ATGCGGCCTTTATGAATACAATGCCATGATGTATTACCATCAGCACTATC
TGATGCGCTGGTTCCCTGCGATGCGCAGATCCATCCCGGCGACGTCGTGC
GCTGCGAGCTGGACATGGACGAGGGCACGCTGCGCTTTGCCGTCAATGGC
GAGGCTCAGGATGGCGGCTTTGACGGCATCGAGGGGGAGGTGTACCCCTG
CGCTGGCAGTTAC
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Coding sequence (CDS) from alignment at Contig_8:381152..382364+

>mRNA_2757 ID=mRNA_2757|Name=jgi.p|Trimin1|134692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_8:381152..382364+ (Tribonema minus UTEX_B_3156 )
GTCAACGTGTGCGTATCTGCGGGGCGCGCCGCGTGGGAGTTCCTGCTGGA
CGCCGACAGCGCCACGGACGAGTGCAGCGTCTTCGGCGCCGCCGCCAAGC
CGCTGCACTCGCGCTGCTACAACTCGAGCCCGTCGCTGTGGATGCGGCGC
GCGTACAACGGCGTCCTGTACTGCCGCGGGCGCCAGCTGCCGAGCTCACG
CACCATGTCCAAGATCCATCCCGGCGACGTCGTGCGCTGCGAGCTGGACA
TGGACGAGGGCACGCTGCGCTTTGCCGTCAATGGCGAGGCTCAGGATGGC
GGCTTTGACGGCATCGAGGGGGAGGTGTACCCCTGCGCTGGCAGTTAC
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