mRNA_2752 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159221
Unique NamemRNA_2752
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159221 vs. uniprot
Match: A0A835YJE3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 6.770e-96
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 MGLRVPAPSVCQQFGDATGFSRILAAGSAPDRAWFALDFNAPPAESYLSLGGVSGEYAYVDTLQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSARAIHAVLDTGASCLTLPAELFDSVTAWAPVMERPCPQD 411
            MGLRVPAPSVCQQFGDATGFSRILAAGSAPDRAWFALDFNAPPAESYLSLGGVSGEYAYVDTLQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSARAIHAVLDTGASCLTLPAELFDSVTAWAPVMERPCPQD
Sbjct:    1 MGLRVPAPSVCQQFGDATGFSRILAAGSAPDRAWFALDFNAPPAESYLSLGGVSGEYAYVDTLQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSARAIHAVLDTGASCLTLPAELFDSVTAWAPVMERPCPQD 137
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BLAST of jgi.p|Trimin1|159221 vs. uniprot
Match: A0A7S1CJT4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJT4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.820e-10
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:   46 DATGFSRILAAGSAPDRAWFALDFNAP--PAESYLSLGGVSGEYAYVDTLQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSARAIHAVLDTGASCLTLPAELFDSVTAWAP 384
            D+  F++++ A  A  R  F LD   P  P  S L LGG + +Y     L W E   +    +   +   L+D ++CGA+    +      ++DTGA CLTLPAE FD+V AWAP
Sbjct:   28 DSETFNKLVGAVGASPRLAFGLDLQPPGSPRNSSLDLGGFAAQYRA--RLLWSERSPYATPRN---FQFPLYDMRMCGASLFGSTTAQWPVLIDTGAVCLTLPAEFFDAVMAWAP 137
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BLAST of jgi.p|Trimin1|159221 vs. uniprot
Match: A0A7S4B049_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B049_CHRCT)

HSP 1 Score: 52.4 bits (124), Expect = 3.530e-5
Identity = 50/148 (33.78%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:    4 GLRVPAPSVCQQFGDATGFSRILAAGSAPDRAW----------FALDFNAPPAESYLSLG-------GVSGEYAYVDT-LQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSARAIHAVLDTGASCLTLPAELFDSVTAWAPVME 393
            GL VPA  +   + DA G      +GS    AW          FALD N   A S L LG       GVS E     T LQW E    P V+S   + L +F+  +C ++    S+    A++D+G+SC T+PA +F ++ +W  V E
Sbjct:  186 GLLVPAALLPFFWADAGGVLGTSPSGS--PTAWKALLAAHADTFALDLNRDEAPSALLLGSWEDGLTGVSDELQQAATRLQWSE----PQVSSF--HELLVFNLSVCSSSLFGASSGWWTAIVDSGSSCFTVPANIFYNLFSWVAVAE 325
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159221 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YJE3_9STRA6.770e-96100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S1CJT4_9STRA1.820e-1036.52Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4B049_CHRCT3.530e-533.78Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:354057..355664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159221|e_gw1.8.73.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DZGB@1|root,2S70F@2759|Eukaryota
Evalue1.02e-09
Seed ortholog55529.EKX42666
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAspartic peptidase domain
Ec32 orthologEc-20_001630.1
TranscriptId159543
TrackFilteredModels1
ProteinId159221
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159221gene_2752Tribonema minus UTEX_B_3156 geneContig_8 354057..355664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2752_1exon_2752_1Tribonema minus UTEX_B_3156 exonContig_8 354057..354225 +
exon_2752_2exon_2752_2Tribonema minus UTEX_B_3156 exonContig_8 355423..355664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2752CDS_2752Tribonema minus UTEX_B_3156 CDSContig_8 354057..354225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159221Trimin1|159221|e_gw1.8.73.1Tribonema minus UTEX_B_3156 polypeptideContig_8 354057..355664 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Trimin1|159221|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=411bp|location=Sequence derived from alignment at Contig_8:354057..355664+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGCGCGTGCCTGCGCCGAGCGTGTGCCAGCAGTTCGGCGACGC
CACCGGCTTCAGCCGCATACTGGCGGCGGGCAGCGCGCCGGACCGCGCGT
GGTTCGCGCTAGACTTCAACGCGCCGCCCGCGGAGAGCTACCTCAGCCTC
GGTGGCGTGAGCGGTGAGTACGCCTACGTCGACACCCTCCAATGGGGCGA
GTACCCCGCCTTCCCCCTCGTCAACTCCTCCGAGCCCTACTCCCTCACCC
TGTTCGACCCCCAGATCTGCGGCGCCGCCGCCGCCCCCCCCAGCGCGCGC
GCGATACACGCCGTTCTCGACACCGGCGCCTCCTGCCTCACCCTCCCCGC
TGAGCTCTTCGACTCCGTAACCGCCTGGGCGCCCGTCATGGAGAGGCCGT
GCCCCCAGGAT
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protein sequence of jgi.p|Trimin1|159221

>Trimin1|159221|e_gw1.8.73.1 ID=Trimin1|159221|e_gw1.8.73.1|Name=jgi.p|Trimin1|159221|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MGLRVPAPSVCQQFGDATGFSRILAAGSAPDRAWFALDFNAPPAESYLSL
GGVSGEYAYVDTLQWGEYPAFPLVNSSEPYSLTLFDPQICGAAAAPPSAR
AIHAVLDTGASCLTLPAELFDSVTAWAPVMERPCPQD
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mRNA from alignment at Contig_8:354057..355664+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Trimin1|159221|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1608bp|location=Sequence derived from alignment at Contig_8:354057..355664+ (Tribonema minus UTEX_B_3156 )
ATGGGGCTGCGCGTGCCTGCGCCGAGCGTGTGCCAGCAGTTCGGCGACGC
CACCGGCTTCAGCCGCATACTGGCGGCGGGCAGCGCGCCGGACCGCGCGT
GGTTCGCGCTAGACTTCAACGCGCCGCCCGCGGAGAGCTACCTCAGCCTC
GGTGGCGTGAGCGGTGAGTGTTGTTGAACTCGTGGAGCGTCTCTCTTGAG
GTTTGCGCTGGACTTCAACGCGCCGCCCGCGGAGAGCTTCCTAGGGCTCG
GCGGAGCGGTGGGTGTTGAACTTGGTTGTTGTAGAGCGTCGCTCTTGAAG
TTGCGCCGAAGCGCGCGTGGGTCGCGCTCGACTTCAACGCGCCGCCTCAA
AGAGCTACCTTGGCTCGGTGGCGTGAGCGGTGAGTGTTGTTGAAGTCGCG
GAGTGTCTCTCTTGAAGTTGGCGGAGCGCGCGTGGTTCGCGCTGGATTTC
AACGCGCGTTGAAGTCCAGCGTAAACCTCAAGAGAGATGCTCCACAACTT
CAACAGCACTCACCGCTCACGCCGCCGAGCCCGAGGAAGCGCTCCGCGGG
CGGTGCGTTGAAGTCGAGCGCGAACCACGCGCGCTCCGGCGTCTCTCTTA
CACCAGGTGAAAGAGCAGCGATCCGCAACTTCGCCAACAACTTCCACGCT
CACCGCTCACGCCACCACGCCCCAGAAAGCTCTCCGCGGGCGGCGCCGCC
CGCGGAGAGCTTCCTGGGGCTCGGCGGTGTGAGCGGTGAGAGTTGAACCT
GTTGCGGAGCGTTGCTCTTGAGGTTGCGCCGGAGCTCGCGTGGTTTGCGC
TCTCGCTTCAATGCGCCGCCCGCAGAGAGCTGCGTCGGCTTGGCGGCTTG
AGCGACGAGGTATTTGGAGGTTGGGGAGTGTCTCTCTTGAGGTTGCTGGA
GCATGTTGAAGTGTTGGGCCGAGGACTGGCGCTCAGAACGAAGGTGATGC
GTTCTGCACAGCAGTATATATCATGCATGCTGGTCCTCATAGCGCTAAAC
CTGCTATGCAGCCATGAATGTGCAAAGCCTCGTGGCCTGAAAGAGTCGGT
CAGTGTGAATTCATCATGCTGTCCTTGTTGCCGGACACCAAACGTGTGAT
TGCCGGACACCAAACGTGTGATTTTGTGTGCCACTGAAGGCACCAAAACG
CCCGTACCGTCCTGAACTACCAACCCGCAAGCTGCACAGGCTGCCTCACC
ACAACGCTCAGCGTCCTTACGCCCAAACTCTACACACATGCCACGTGGCC
GTACATGCTTCACCTCTCACGGCACTTCATCCTAACCCCCCCCTCCGCCC
CTCACCTCTCACATGCACTTCATCATACCCCTCCCCCCCCCTTCCCCCCG
CCCCCCCCCCCCTCAGACGCCTACGTCGACACCCTCCAATGGGGCGAGTA
CCCCGCCTTCCCCCTCGTCAACTCCTCCGAGCCCTACTCCCTCACCCTGT
TCGACCCCCAGATCTGCGGCGCCGCCGCCGCCCCCCCCAGCGCGCGCGCG
ATACACGCCGTTCTCGACACCGGCGCCTCCTGCCTCACCCTCCCCGCTGA
GCTCTTCGACTCCGTAACCGCCTGGGCGCCCGTCATGGAGAGGCCGTGCC
CCCAGGAT
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Coding sequence (CDS) from alignment at Contig_8:354057..355664+

>mRNA_2752 ID=mRNA_2752|Name=jgi.p|Trimin1|159221|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=411bp|location=Sequence derived from alignment at Contig_8:354057..355664+ (Tribonema minus UTEX_B_3156 )
ATGGGGCTGCGCGTGCCTGCGCCGAGCGTGTGCCAGCAGTTCGGCGACGC
CACCGGCTTCAGCCGCATACTGGCGGCGGGCAGCGCGCCGGACCGCGCGT
GGTTCGCGCTAGACTTCAACGCGCCGCCCGCGGAGAGCTACCTCAGCCTC
GGTGGCGTGAGCGGTGAGTACGCCTACGTCGACACCCTCCAATGGGGCGA
GTACCCCGCCTTCCCCCTCGTCAACTCCTCCGAGCCCTACTCCCTCACCC
TGTTCGACCCCCAGATCTGCGGCGCCGCCGCCGCCCCCCCCAGCGCGCGC
GCGATACACGCCGTTCTCGACACCGGCGCCTCCTGCCTCACCCTCCCCGC
TGAGCTCTTCGACTCCGTAACCGCCTGGGCGCCCGTCATGGAGAGGCCGT
GCCCCCAGGAT
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