mRNA_2738 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144098
Unique NamemRNA_2738
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 266 bits (679), Expect = 7.000e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 417
            QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG
Sbjct:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 139          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.500e-38
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRA 357
            QVKPICV H+W V  L EF P+N GLLG+N+NR  KIC+RLR P D  + YP+E  L  +LHEL H   G HSA FYR+LD L +EC+ L+  GI+GRNMP+ G+G++LGGG A  D RA
Sbjct:   35 QVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARA 154          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.150e-36
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    4 VKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQGSG 417
            VKPICV H+W V  L EF P+N  LLG+N+NR  KIC+RLR P D  + YP+E  +  +LHEL H   G HSA FYR+LD L +EC+ L   GI+GRNMP+ G+G+ LGGG A  D RA       +R +   IM GSG
Sbjct:   81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIM-GSG 218          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A5A7V0N8_CUCME (DNA-dependent metalloprotease WSS1-like n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V0N8_CUCME)

HSP 1 Score: 115 bits (289), Expect = 4.970e-30
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330
            QV+PI  K  W V  L EFYP N GL+GVNI    +I +R+R P +    +P+E  LD +LHEL H+VHG H+ADFY LLD LR+ECE LM+ GI+G    +   GR LGG
Sbjct:   33 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMSKGITGTGQGFDLRGRRLGG 143          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A1S4DV14_CUCME (LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1-like n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4DV14_CUCME)

HSP 1 Score: 115 bits (289), Expect = 1.460e-28
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330
            QV+PI  K  W V  L EFYP N GL+GVNI    +I +R+R P +    +P+E  LD +LHEL H+VHG H+ADFY LLD LR+ECE LM+ GI+G    +   GR LGG
Sbjct:   33 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMSKGITGTGQGFDLRGRRLGG 143          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6J1HT53_CUCMA (DNA-dependent metalloprotease WSS1-like isoform X1 n=6 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HT53_CUCMA)

HSP 1 Score: 115 bits (288), Expect = 3.020e-28
Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330
            QV+PI  K  W V  L EFYP N GL+GVNI    +I +R+R P      +P+E  LD +LHEL H+VHG H+ADFY LLD LR+ECE LM  GI+G    +   GR LGG
Sbjct:   56 QVQPIMRKRRWKVETLSEFYPDNPGLMGVNIGGGQEIKLRIRRPNSEWDFFPYEQILDTMLHELCHIVHGPHNADFYNLLDELRKECEELMCKGITGTGQGFDVRGRRLGG 166          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A540K4W6_MALBA (WLM domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540K4W6_MALBA)

HSP 1 Score: 113 bits (282), Expect = 5.510e-28
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAAR---DVRAXXXXXXXRRAQAGAIM 405
            QV+PI  KH+W V  L EF P+N GL G+N+    +I +RLR P      YP+E  LD +LHEL H  HG H+ADFYRLLD +R ECE L+  GISG    +   GR LGG S       +R         RA+ GA++
Sbjct:   33 QVQPIMRKHQWKVKVLSEFCPANPGLQGLNVGGGVEIKLRLRRPNSDWVFYPYEQILDTMLHELCHNEHGPHNADFYRLLDEIRRECEELIAKGISGTGQGFDLPGRRLGGFSRQAPLSSIRQTALAAAETRARRGAVL 171          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A0J8BEE3_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BEE3_BETVV)

HSP 1 Score: 112 bits (281), Expect = 2.100e-27
Identity = 65/139 (46.76%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDV---RAXXXXXXXRRAQAGAIM 405
            QV+PI  KH+W V  L EF PSN  L+G+NI   ++I +RLR P      +P+E  LD +LHEL H  HG H+ADFY+LLD LR ECE LM  GI+G    +   GR LGG S    +   R        RRAQ G +M
Sbjct:   35 QVQPIMHKHKWKVQVLSEFCPSNPSLMGLNIGGGSEIKIRLRRPERQWDFFPYEQILDTMLHELCHNQHGPHNADFYKLLDELRLECEELMAKGITGTGRGFDVPGRRLGGFSQPAPLPLLRQSALAAAERRAQRGTLM 173          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: A0A6J1DF71_MOMCH (DNA-dependent metalloprotease WSS1-like isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DF71_MOMCH)

HSP 1 Score: 112 bits (281), Expect = 2.250e-27
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330
            QV+PI  K +W V  L EFYP+N GL+GVNI    +I +R+R P +    +P+E  LD +LHEL H+VHG H+ADFY LLD LR+ECE LM  GI+     +   GR LGG
Sbjct:   33 QVQPIMRKRKWKVETLSEFYPANPGLMGVNIGGGQEIKLRIRRPNNEWDFFPYEQILDTMLHELCHIVHGPHNADFYSLLDELRKECEELMCKGITRTGQGFDLHGRRLGG 143          
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Match: UPI000C1D2C0C (uncharacterized protein LOC111410124 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D2C0C)

HSP 1 Score: 110 bits (276), Expect = 4.080e-26
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGG 330
            QV+PI  KH W V  L EF P N  LLG+N+ +   + +RLR P   D  YPF   LD +LHEL H VHG H+A+FY+L D +R+ECE LM  GISG    +   GR LGG
Sbjct:   34 QVQPIMRKHNWRVKVLSEFCPKNSALLGLNVGKGIHVKLRLRRPNRDDQFYPFNEILDTMLHELCHNVHGPHNANFYKLWDEIRKECEDLMNKGISGTGEGFDVPGRRLGG 144          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144098 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTT9_9STRA7.000e-90100.00WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
D7FMC5_ECTSI4.500e-3857.50Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J6X1_9PHAE4.150e-3651.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A7V0N8_CUCME4.970e-3052.25DNA-dependent metalloprotease WSS1-like n=1 Tax=Cu... [more]
A0A1S4DV14_CUCME1.460e-2852.25LOW QUALITY PROTEIN: DNA-dependent metalloprotease... [more]
A0A6J1HT53_CUCMA3.020e-2852.25DNA-dependent metalloprotease WSS1-like isoform X1... [more]
A0A540K4W6_MALBA5.510e-2845.32WLM domain-containing protein n=1 Tax=Malus baccat... [more]
A0A0J8BEE3_BETVV2.100e-2746.76Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A6J1DF71_MOMCH2.250e-2751.35DNA-dependent metalloprotease WSS1-like isoform X1... [more]
UPI000C1D2C0C4.080e-2650.45uncharacterized protein LOC111410124 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:271233..271649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144098|gw1.8.202.1
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
Descriptionzinc ion transmembrane transporter activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1558@1|root,KOG1558@2759|Eukaryota
Evalue7.38e-39
Seed ortholog2880.D7FMC5
Hectar predicted targeting categoryother localisation
TranscriptId144420
TrackFilteredModels1
ProteinId144098
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144098gene_2738Tribonema minus UTEX_B_3156 geneContig_8 271233..271649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2738_1exon_2738_1Tribonema minus UTEX_B_3156 exonContig_8 271233..271649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2738CDS_2738Tribonema minus UTEX_B_3156 CDSContig_8 271233..271649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144098Trimin1|144098|gw1.8.202.1Tribonema minus UTEX_B_3156 polypeptideContig_8 271233..271649 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGAAGCCGATCTGCGTGAAGCACGAGTGGAGCGTCGCCCACCTGGA
GGAGTTCTACCCCTCCAACAAGGGCCTCCTGGGCGTCAACATCAACAGGA
CCAAGATCTGCGTGCGCCTGCGCGAGCCGCGCGACGCCGACGCCCTCTAC
CCCTTCGAGCTCGCCCTCGACATCGTCCTGCACGAGCTCACGCACATGGT
GCACGGCGCGCACTCCGCCGACTTCTACCGCCTCCTCGACGCGCTGCGCG
AGGAGTGCGAGGCGCTCATGACCGCGGGCATCAGCGGCCGCAACATGCCG
TGGCAGGGCGAGGGGCGCGCGCTCGGCGGCGGCAGCGCCGCGCGCGACGT
GCGCGCCGCCGCCGCCGCCGCCGCCGCGCGCCGCGCGCAGGCCGGCGCCA
TCATGCAGGGCAGCGGG
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protein sequence of jgi.p|Trimin1|144098

>Trimin1|144098|gw1.8.202.1 ID=Trimin1|144098|gw1.8.202.1|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=139bp
QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALY
PFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMP
WQGEGRALGGGSAARDVRAAAAAAAARRAQAGAIMQGSG
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mRNA from alignment at Contig_8:271233..271649-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )
CAGGTGAAGCCGATCTGCGTGAAGCACGAGTGGAGCGTCGCCCACCTGGA GGAGTTCTACCCCTCCAACAAGGGCCTCCTGGGCGTCAACATCAACAGGA CCAAGATCTGCGTGCGCCTGCGCGAGCCGCGCGACGCCGACGCCCTCTAC CCCTTCGAGCTCGCCCTCGACATCGTCCTGCACGAGCTCACGCACATGGT GCACGGCGCGCACTCCGCCGACTTCTACCGCCTCCTCGACGCGCTGCGCG AGGAGTGCGAGGCGCTCATGACCGCGGGCATCAGCGGCCGCAACATGCCG TGGCAGGGCGAGGGGCGCGCGCTCGGCGGCGGCAGCGCCGCGCGCGACGT GCGCGCCGCCGCCGCCGCCGCCGCCGCGCGCCGCGCGCAGGCCGGCGCCA TCATGCAGGGCAGCGGG
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Coding sequence (CDS) from alignment at Contig_8:271233..271649-

>mRNA_2738 ID=mRNA_2738|Name=jgi.p|Trimin1|144098|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=417bp|location=Sequence derived from alignment at Contig_8:271233..271649- (Tribonema minus UTEX_B_3156 )
CAGGTGAAGCCGATCTGCGTGAAGCACGAGTGGAGCGTCGCCCACCTGGA
GGAGTTCTACCCCTCCAACAAGGGCCTCCTGGGCGTCAACATCAACAGGA
CCAAGATCTGCGTGCGCCTGCGCGAGCCGCGCGACGCCGACGCCCTCTAC
CCCTTCGAGCTCGCCCTCGACATCGTCCTGCACGAGCTCACGCACATGGT
GCACGGCGCGCACTCCGCCGACTTCTACCGCCTCCTCGACGCGCTGCGCG
AGGAGTGCGAGGCGCTCATGACCGCGGGCATCAGCGGCCGCAACATGCCG
TGGCAGGGCGAGGGGCGCGCGCTCGGCGGCGGCAGCGCCGCGCGCGACGT
GCGCGCCGCCGCCGCCGCCGCCGCCGCGCGCCGCGCGCAGGCCGGCGCCA
TCATGCAGGGCAGCGGG
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