mRNA_2698 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143841
Unique NamemRNA_2698
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143841 vs. uniprot
Match: A0A836C7Z2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.120e-57
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 DLITISPLCTDYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSMLSSKAWARAEAILLEAGYLLYVSKLKGSEFSIACHRRRVYIL 273
            DLITISPLCTDYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSMLSSKAWARAEAILLEAGYLLYVSKLKGSEFSIACHRRRVYIL
Sbjct:    1 DLITISPLCTDYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSMLSSKAWARAEAILLEAGYLLYVSKLKGSEFSIACHRRRVYIL 91
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BLAST of jgi.p|Trimin1|143841 vs. uniprot
Match: A0A836CG26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG26_9STRA)

HSP 1 Score: 148 bits (373), Expect = 9.320e-40
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   31 DYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSMLSSKAWARAEAILLEAGYLLYVSKLKGSEFSIACHRRRVYIL 273
            DYANGL IEGEAAEVTEKAAQLIVRAGLRC L+ENVVSMLSS+AWARAE ILLEAGYLLYVSKLKGSEFSIACHRRRVYIL
Sbjct:  433 DYANGLGIEGEAAEVTEKAAQLIVRAGLRCCLIENVVSMLSSRAWARAEVILLEAGYLLYVSKLKGSEFSIACHRRRVYIL 513
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BLAST of jgi.p|Trimin1|143841 vs. uniprot
Match: A0A836CCY4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCY4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.860e-17
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   31 DYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSMLSSKAWARAEAILLEAGYLL 207
            DYANGL +EGEAA+VT  AA+LIVRA LRC ++ENVV+MLSSKAWA+AEA+LL  GY L
Sbjct:  645 DYANGLGVEGEAAQVTVHAAKLIVRAKLRCCVLENVVAMLSSKAWAQAEAVLLAHGYSL 703
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143841 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C7Z2_9STRA2.120e-57100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CG26_9STRA9.320e-4093.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCY4_9STRA1.860e-1772.88Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:830..1102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143841|gw1.8.199.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558,ko:K07486
EC2.1.1.37
Preferred namedcm
DescriptionDNA (cytosine-5-)-methyltransferase activity
COG categoryL
Max annot lvl2|Bacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria
Evalue2.13e-05
Seed ortholog1101190.ARWB01000001_gene2778
Hectar predicted targeting categoryother localisation
TranscriptId144163
TrackFilteredModels1
ProteinId143841
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143841gene_2698Tribonema minus UTEX_B_3156 geneContig_8 830..1102 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2698_1exon_2698_1Tribonema minus UTEX_B_3156 exonContig_8 830..1102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2698CDS_2698Tribonema minus UTEX_B_3156 CDSContig_8 830..1102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143841Trimin1|143841|gw1.8.199.1Tribonema minus UTEX_B_3156 polypeptideContig_8 830..1102 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Trimin1|143841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_8:830..1102- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATCTCATCACGATCTCCCCCCTGTGCACAGACTATGCCAATGGGCTGGT
TATCGAGGGCGAGGCCGCCGAAGTGACGGAGAAGGCCGCGCAGCTCATCG
TGAGGGCTGGACTGCGCTGCTGGTTGATGGAGAATGTGGTATCCATGCTG
AGCTCGAAGGCTTGGGCACGGGCGGAGGCTATACTGCTGGAGGCGGGCTA
CTTACTGTACGTGAGCAAGCTCAAGGGCTCAGAGTTTAGCATTGCCTGCC
ACAGGCGCCGAGTGTACATACTC
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protein sequence of jgi.p|Trimin1|143841

>Trimin1|143841|gw1.8.199.1 ID=Trimin1|143841|gw1.8.199.1|Name=jgi.p|Trimin1|143841|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
DLITISPLCTDYANGLVIEGEAAEVTEKAAQLIVRAGLRCWLMENVVSML
SSKAWARAEAILLEAGYLLYVSKLKGSEFSIACHRRRVYIL
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mRNA from alignment at Contig_8:830..1102-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Trimin1|143841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_8:830..1102- (Tribonema minus UTEX_B_3156 )
GATCTCATCACGATCTCCCCCCTGTGCACAGACTATGCCAATGGGCTGGT
TATCGAGGGCGAGGCCGCCGAAGTGACGGAGAAGGCCGCGCAGCTCATCG
TGAGGGCTGGACTGCGCTGCTGGTTGATGGAGAATGTGGTATCCATGCTG
AGCTCGAAGGCTTGGGCACGGGCGGAGGCTATACTGCTGGAGGCGGGCTA
CTTACTGTACGTGAGCAAGCTCAAGGGCTCAGAGTTTAGCATTGCCTGCC
ACAGGCGCCGAGTGTACATACTC
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Coding sequence (CDS) from alignment at Contig_8:830..1102-

>mRNA_2698 ID=mRNA_2698|Name=jgi.p|Trimin1|143841|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_8:830..1102- (Tribonema minus UTEX_B_3156 )
GATCTCATCACGATCTCCCCCCTGTGCACAGACTATGCCAATGGGCTGGT
TATCGAGGGCGAGGCCGCCGAAGTGACGGAGAAGGCCGCGCAGCTCATCG
TGAGGGCTGGACTGCGCTGCTGGTTGATGGAGAATGTGGTATCCATGCTG
AGCTCGAAGGCTTGGGCACGGGCGGAGGCTATACTGCTGGAGGCGGGCTA
CTTACTGTACGTGAGCAAGCTCAAGGGCTCAGAGTTTAGCATTGCCTGCC
ACAGGCGCCGAGTGTACATACTC
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