mRNA_2692 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.020e-38 Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198 PAHF CP+ LDWLVNPVITPSG TYSQAELELWVRENGTDP+ARS LAMSEVIPNLAIATAVHYHR Sbjct: 1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 66
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA) HSP 1 Score: 122 bits (307), Expect = 2.610e-35 Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198 PAHF CP LDWLVNP ITPSGITYS+ ELELWVRENGTDP+ARS L +SEVIPNLAIATAVHYHR Sbjct: 1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAIATAVHYHR 66
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA) HSP 1 Score: 117 bits (292), Expect = 9.030e-33 Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198 PAHF CP++LDWLVNPV TPSGIT + ELELWV ENGTDP+ARS LA SEVIPNLA+ATAVHYHR Sbjct: 21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAVATAVHYHR 86
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.480e-30 Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAI--ATAVH 189 PAH CP++LDWLVNPVITPSGITYS+ EL+LWVRENGTDPVARS LAMSEVI NLAI ATAVH Sbjct: 1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.600e-29 Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAV 186 PAHF P++L WLVNPV+TPSGITYS+ ELELWVRENGTDP+AR LAMSEV PNLAIATAV Sbjct: 1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 62
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.870e-28 Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAI 174 PAHF CP++LDW VNPV+TPSGITYS+ ELELWV ENGTDP+ARS L +SEV+PN+AI Sbjct: 1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 6.720e-24 Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHL 141 PAHF CP++LDWLVNPVITPSGITYS+AELELWVRENGTDP+ARS L Sbjct: 1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM) HSP 1 Score: 65.9 bits (159), Expect = 8.440e-12 Identity = 25/66 (37.88%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198 P+ + CP++L+W+ +PV+TPSG++Y +A LE W+R + DP+ R L + +V N + A+ ++R Sbjct: 95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYANRNLKDAIEHYR 160
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL) HSP 1 Score: 65.5 bits (158), Expect = 3.040e-11 Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1 Query: 1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198 PAH CP+ L + +PVITPSG TY + +E W+ +GTDP R L ++IPN + V H+ Sbjct: 163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVHK 228
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A7S3J6A7_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J6A7_9SPIT) HSP 1 Score: 62.0 bits (149), Expect = 7.970e-11 Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1 Query: 10 FQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVH 189 + CP+ D +V+PVITPSG+TY + +E ++ N DPV++ L ++++ PNLAI +H Sbjct: 43 YTCPIKYDKIVDPVITPSGVTYERVMIERSIKVNRVDPVSKDRLTIAKIKPNLAIKCLIH 102 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGGCACATTTTCAATGCCCCGTTGCCCTCGATTGGCTGGTGAACCCTGTback to top protein sequence of jgi.p|Trimin1|147297 >Trimin1|147297|gw1.7.226.1 ID=Trimin1|147297|gw1.7.226.1|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSback to top mRNA from alignment at Contig_7:1900867..1901064+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_7:1900867..1901064+ >mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )back to top |