mRNA_2692 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147297
Unique NamemRNA_2692
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.020e-38
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198
            PAHF CP+ LDWLVNPVITPSG TYSQAELELWVRENGTDP+ARS LAMSEVIPNLAIATAVHYHR
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 66          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.610e-35
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198
            PAHF CP  LDWLVNP ITPSGITYS+ ELELWVRENGTDP+ARS L +SEVIPNLAIATAVHYHR
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAIATAVHYHR 66          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.030e-33
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198
            PAHF CP++LDWLVNPV TPSGIT  + ELELWV ENGTDP+ARS LA SEVIPNLA+ATAVHYHR
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAVATAVHYHR 86          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.480e-30
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAI--ATAVH 189
            PAH  CP++LDWLVNPVITPSGITYS+ EL+LWVRENGTDPVARS LAMSEVI NLAI  ATAVH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.600e-29
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAV 186
            PAHF  P++L WLVNPV+TPSGITYS+ ELELWVRENGTDP+AR  LAMSEV PNLAIATAV
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 62          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.870e-28
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAI 174
            PAHF CP++LDW VNPV+TPSGITYS+ ELELWV ENGTDP+ARS L +SEV+PN+AI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.720e-24
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHL 141
            PAHF CP++LDWLVNPVITPSGITYS+AELELWVRENGTDP+ARS L
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 8.440e-12
Identity = 25/66 (37.88%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198
            P+ + CP++L+W+ +PV+TPSG++Y +A LE W+R +  DP+ R  L + +V  N  +  A+ ++R
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYANRNLKDAIEHYR 160          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 65.5 bits (158), Expect = 3.040e-11
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVHYHR 198
            PAH  CP+ L  + +PVITPSG TY +  +E W+  +GTDP  R  L   ++IPN  +   V  H+
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVHK 228          
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Match: A0A7S3J6A7_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J6A7_9SPIT)

HSP 1 Score: 62.0 bits (149), Expect = 7.970e-11
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   10 FQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMSEVIPNLAIATAVH 189
            + CP+  D +V+PVITPSG+TY +  +E  ++ N  DPV++  L ++++ PNLAI   +H
Sbjct:   43 YTCPIKYDKIVDPVITPSGVTYERVMIERSIKVNRVDPVSKDRLTIAKIKPNLAIKCLIH 102          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147297 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZZ2_9STRA5.020e-3890.91U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA2.610e-3584.85U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C868_9STRA9.030e-3380.30U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YWC4_9STRA1.480e-3083.08U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA1.600e-2980.65U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CBI8_9STRA6.870e-2875.86U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA6.720e-2487.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A2N1MYB8_9GLOM8.440e-1237.88RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S4FZ85_9EUGL3.040e-1142.42Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3J6A7_9SPIT7.970e-1141.67Hypothetical protein n=2 Tax=Euplotes harpa TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1900867..1901064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147297|gw1.7.226.1
DescriptionRING-type E3 ubiquitin transferase
COG categoryH
Max annot lvl35493|Streptophyta
EggNOG OGs28JP5@1|root,2QS2D@2759|Eukaryota,37P0A@33090|Viridiplantae,3G7GF@35493|Streptophyta,3KYMB@4447|Liliopsida,3IEE9@38820|Poales
Evalue3.34e-09
Seed ortholog15368.BRADI1G44390.1
Hectar predicted targeting categoryother localisation
TranscriptId147619
TrackFilteredModels1
ProteinId147297
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147297gene_2692Tribonema minus UTEX_B_3156 geneContig_7 1900867..1901064 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2692_1exon_2692_1Tribonema minus UTEX_B_3156 exonContig_7 1900867..1901064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2692CDS_2692Tribonema minus UTEX_B_3156 CDSContig_7 1900867..1901064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147297Trimin1|147297|gw1.7.226.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1900867..1901064 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACATTTTCAATGCCCCGTTGCCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCATCACATACTCACAGGCGGAACTTGAGCTTTGGG
TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGTCACCTTGCTATGAGC
GAGGTGATCCCTAATCTTGCCATTGCAACTGCAGTGCACTATCATCGT
back to top

protein sequence of jgi.p|Trimin1|147297

>Trimin1|147297|gw1.7.226.1 ID=Trimin1|147297|gw1.7.226.1|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
PAHFQCPVALDWLVNPVITPSGITYSQAELELWVRENGTDPVARSHLAMS
EVIPNLAIATAVHYHR
back to top

mRNA from alignment at Contig_7:1900867..1901064+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCAATGCCCCGTTGCCCTCGATTGGCTGGTGAACCCTGT AATCACCCCAAGTGGCATCACATACTCACAGGCGGAACTTGAGCTTTGGG TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGTCACCTTGCTATGAGC GAGGTGATCCCTAATCTTGCCATTGCAACTGCAGTGCACTATCATCGT
back to top

Coding sequence (CDS) from alignment at Contig_7:1900867..1901064+

>mRNA_2692 ID=mRNA_2692|Name=jgi.p|Trimin1|147297|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_7:1900867..1901064+ (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCAATGCCCCGTTGCCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCATCACATACTCACAGGCGGAACTTGAGCTTTGGG
TGCGCGAGAATGGCACGGATCCTGTTGCTCGCAGTCACCTTGCTATGAGC
GAGGTGATCCCTAATCTTGCCATTGCAACTGCAGTGCACTATCATCGT
back to top