mRNA_2691 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158766
Unique NamemRNA_2691
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.220e-78
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCEQ 351
            MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCEQ
Sbjct:    1 MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCEQ 117
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.610e-60
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCE 348
            M PLA VTLLGS+I+PP  DDTSQHP PGKEGAV GKRKRGK SGGKSA+PA+TCPVPDCGKPAKRKWCEDHRHYK+CRAEGCEK +TYGI G GAQWCITHKEEGME+V+ K+CE
Sbjct:    1 MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCE 116
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A835Z3T1_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.830e-36
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:   88 KEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCE 348
            K GAV GKRKRG+ SG KSA+PAK C VP CG PAK KWCEDHR+YKICRAEGCEK + YGITGAGAQ CITH EEGMENV+ K+CE
Sbjct:   13 KRGAVGGKRKRGQSSGAKSAQPAKKCLVPGCGNPAKHKWCEDHRYYKICRAEGCEKRSAYGITGAGAQRCITHNEEGMENVISKRCE 99
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A835YYI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.710e-31
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    4 PPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCK 339
            PPLA VTLLG++I PPC DD S+   PG+EG V GKRKRG  + GK A+ AK C V  C   AKRKWC +H+H+K+CR +GC K  +Y I G GAQWCI HK   M     K
Sbjct:  348 PPLAEVTLLGNTIQPPCQDDCSRPSAPGQEGVVGGKRKRGSSNPGKRAKTAKQCAVKGCSNLAKRKWCGEHKHFKVCRQQGCSKAPSYNIRGVGAQWCIEHKTGDMHTAKSK 459
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A836CFL9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.550e-15
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  169 VPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCE 348
            +P+C   AK KWC++HR Y ICRA+GCEK + YGI G G QWC+ HK   ME+V  K CE
Sbjct:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCE 60
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A836CF86_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF86_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.490e-12
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  157 KTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQC 345
            K C  P C   A  KWC+DH   + CR EGC K T +   G GAQWC THK+EGM +VV   C
Sbjct:    3 KLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 65
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BLAST of jgi.p|Trimin1|158766 vs. uniprot
Match: A0A835Z4C5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.860e-9
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:  154 AKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVV 333
            +K C  P C   A RKWCE+H+ +K CRA  C     Y + GAG QWC  H+ E M +VV
Sbjct:   75 SKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVV 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YL77_9STRA1.220e-78100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAP8_9STRA1.610e-6082.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3T1_9STRA4.830e-3677.01EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YYI8_9STRA6.710e-3155.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFL9_9STRA1.550e-1556.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CF86_9STRA5.490e-1250.79Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4C5_9STRA8.860e-946.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1897689..1898672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158766|e_gw1.7.322.1
Hectar predicted targeting categoryother localisation
TranscriptId159088
TrackFilteredModels1
ProteinId158766
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158766gene_2691Tribonema minus UTEX_B_3156 geneContig_7 1897689..1898672 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2691_1exon_2691_1Tribonema minus UTEX_B_3156 exonContig_7 1897689..1898672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2691CDS_2691Tribonema minus UTEX_B_3156 CDSContig_7 1897689..1898672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158766Trimin1|158766|e_gw1.7.322.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1897689..1898672 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Trimin1|158766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_7:1897689..1898672- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGCTGGCCACTGTCACGCTCCTCGGCAGCAGCATAAACCCTCC
ATGCGGAGACGACACCAGTCAACACCCAAAGCCCGGAAAAGAGGGGGCGG
TTAGTGGCAAACGCAAGCGAGGCAAGAGAAGTGGGGGTAAGTCTGCAGAA
CCTGCCAAAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGATTTGCCGCGCAGAGGGGTGCG
AGAAGCTAACTACATATGGCATCACCGGCGCAGGAGCACAGTGGTGCATA
ACACACAAGGAGGAGGGCATGGAGAATGTAGTTTGCAAACAGTGTGAGCA
ATGCAGCAAGCAAGCAAGCTTCGGGTATGATTGGAGGCGCCCTCTGCGCT
GCACTGATCACATGGAGGAGGGCATGGAGAATGTAGTTAGCAAACAGTGT
GAGCAATGTAGCAAGCAACCAAGCTTCGGGTATGTTTGGAGGCGCCCTCT
GTGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTAGTTAGCAAAC
AGTGTGAGCAATGCAGCAAGCATCCATGCTTCGGGTATGATTGGATGTGC
CCTCTGCGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTGATTAG
CAAACAGTGTGAGCAATGCAGCAAGCAACCAAGCTTCGGATATGATTGGA
TACGCCCTCTGCGATGCGCTGATCACAGGGAGGAAGGCATGGAGGACGTG
GTCAATAAGCGATGCGAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGA
CTGGAGGCGTCCTCTGCGCTGCGCTGACCACAGGGAGGAGGGCATGGAAA
AGGACGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACCAACCTGC
GGATATGATTGGATGCGCCCTTTGCGTTGTGCAGATCACAAGGAGAGCGA
TATGGAGAATGTGATTACTAAGCGGTGCGAACAC
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protein sequence of jgi.p|Trimin1|158766

>Trimin1|158766|e_gw1.7.322.1 ID=Trimin1|158766|e_gw1.7.322.1|Name=jgi.p|Trimin1|158766|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAE
PAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCI
THKEEGMENVVCKQCEQCSKQASFGYDWRRPLRCTDHMEEGMENVVSKQC
EQCSKQPSFGYVWRRPLCCADHREEGMENVVSKQCEQCSKHPCFGYDWMC
PLRCADHREEGMENVISKQCEQCSKQPSFGYDWIRPLRCADHREEGMEDV
VNKRCEQCSKHPSFGYDWRRPLRCADHREEGMEKDVINKRCEQCSKQPTC
GYDWMRPLRCADHKESDMENVITKRCEH
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mRNA from alignment at Contig_7:1897689..1898672-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Trimin1|158766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_7:1897689..1898672- (Tribonema minus UTEX_B_3156 )
ATGCCACCGCTGGCCACTGTCACGCTCCTCGGCAGCAGCATAAACCCTCC
ATGCGGAGACGACACCAGTCAACACCCAAAGCCCGGAAAAGAGGGGGCGG
TTAGTGGCAAACGCAAGCGAGGCAAGAGAAGTGGGGGTAAGTCTGCAGAA
CCTGCCAAAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGATTTGCCGCGCAGAGGGGTGCG
AGAAGCTAACTACATATGGCATCACCGGCGCAGGAGCACAGTGGTGCATA
ACACACAAGGAGGAGGGCATGGAGAATGTAGTTTGCAAACAGTGTGAGCA
ATGCAGCAAGCAAGCAAGCTTCGGGTATGATTGGAGGCGCCCTCTGCGCT
GCACTGATCACATGGAGGAGGGCATGGAGAATGTAGTTAGCAAACAGTGT
GAGCAATGTAGCAAGCAACCAAGCTTCGGGTATGTTTGGAGGCGCCCTCT
GTGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTAGTTAGCAAAC
AGTGTGAGCAATGCAGCAAGCATCCATGCTTCGGGTATGATTGGATGTGC
CCTCTGCGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTGATTAG
CAAACAGTGTGAGCAATGCAGCAAGCAACCAAGCTTCGGATATGATTGGA
TACGCCCTCTGCGATGCGCTGATCACAGGGAGGAAGGCATGGAGGACGTG
GTCAATAAGCGATGCGAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGA
CTGGAGGCGTCCTCTGCGCTGCGCTGACCACAGGGAGGAGGGCATGGAAA
AGGACGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACCAACCTGC
GGATATGATTGGATGCGCCCTTTGCGTTGTGCAGATCACAAGGAGAGCGA
TATGGAGAATGTGATTACTAAGCGGTGCGAACAC
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Coding sequence (CDS) from alignment at Contig_7:1897689..1898672-

>mRNA_2691 ID=mRNA_2691|Name=jgi.p|Trimin1|158766|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_7:1897689..1898672- (Tribonema minus UTEX_B_3156 )
ATGCCACCGCTGGCCACTGTCACGCTCCTCGGCAGCAGCATAAACCCTCC
ATGCGGAGACGACACCAGTCAACACCCAAAGCCCGGAAAAGAGGGGGCGG
TTAGTGGCAAACGCAAGCGAGGCAAGAGAAGTGGGGGTAAGTCTGCAGAA
CCTGCCAAAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGATTTGCCGCGCAGAGGGGTGCG
AGAAGCTAACTACATATGGCATCACCGGCGCAGGAGCACAGTGGTGCATA
ACACACAAGGAGGAGGGCATGGAGAATGTAGTTTGCAAACAGTGTGAGCA
ATGCAGCAAGCAAGCAAGCTTCGGGTATGATTGGAGGCGCCCTCTGCGCT
GCACTGATCACATGGAGGAGGGCATGGAGAATGTAGTTAGCAAACAGTGT
GAGCAATGTAGCAAGCAACCAAGCTTCGGGTATGTTTGGAGGCGCCCTCT
GTGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTAGTTAGCAAAC
AGTGTGAGCAATGCAGCAAGCATCCATGCTTCGGGTATGATTGGATGTGC
CCTCTGCGCTGCGCCGATCACAGGGAGGAGGGCATGGAGAATGTGATTAG
CAAACAGTGTGAGCAATGCAGCAAGCAACCAAGCTTCGGATATGATTGGA
TACGCCCTCTGCGATGCGCTGATCACAGGGAGGAAGGCATGGAGGACGTG
GTCAATAAGCGATGCGAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGA
CTGGAGGCGTCCTCTGCGCTGCGCTGACCACAGGGAGGAGGGCATGGAAA
AGGACGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACCAACCTGC
GGATATGATTGGATGCGCCCTTTGCGTTGTGCAGATCACAAGGAGAGCGA
TATGGAGAATGTGATTACTAAGCGGTGCGAACAC
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