mRNA_2684 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158737
Unique NamemRNA_2684
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158737 vs. uniprot
Match: A0A836C9G2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G2_9STRA)

HSP 1 Score: 281 bits (720), Expect = 6.070e-91
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1 
Query:    1 MLCVSAAGGKGTTIKQLPCSDAVFNDGAKAGLWTLVDASKCWEDDTICGVGSTCSNCCNKAYSAAGTKCGGGXXXXXXXXXXXXXXXXXXXASSFWYGLGFTACGTEPXXXXXXXXXXXXXXXXXXXKAFNALGTQCGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSYWLGQLFTACGTEPXXXXXXXXXXXXXXXXXXXTAYDALGTKCGGSXXXXXXXXXXXXXXXXXXNASSYWPGKAFTACGTEPXXXXXXXXXXXXXXXXXXXXXNWRSVCN 912
            MLCVSAAGGKGTTIKQLPCSDAVFNDGAKAGLWTLVDASKCWEDDTICGVGSTCSNCCNKAYSAAGTKCGGGXXXXXXXXXXXXXXXXXXXASSFWYGLGFTACGTEPXXXXXXXXXXXXXXXXXXXKAFNALGTQCGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSYWLGQLFTACGTEPXXXXXXXXXXXXXXXXXXXTAYDALGTKCGGSXXXXXXXXXXXXXXXXXXNASSYWPGKAFTACGTEPXXXXXXXXXXXXXXXXXXXXXNWRSVCN
Sbjct:    1 MLCVSAAGGKGTTIKQLPCSDAVFNDGAKAGLWTLVDASKCWEDDTICGVGSTCSNCCNKAYSAAGTKCGGGXXXXXXXXXXXXXXXXXXXASSFWYGLGFTACGTEPXXXXXXXXXXXXXXXXXXXKAFNALGTQCGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSYWLGQLFTACGTEPXXXXXXXXXXXXXXXXXXXTAYDALGTKCGGSXXXXXXXXXXXXXXXXXXNASSYWPGKAFTACGTEPXXXXXXXXXXXXXXXXXXXXXNWRSVCN 304
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158737 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9G2_9STRA6.070e-91100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1864958..1865872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158737|e_gw1.7.202.1
Hectar predicted targeting categoryother localisation
TranscriptId159059
TrackFilteredModels1
ProteinId158737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158737gene_2684Tribonema minus UTEX_B_3156 geneContig_7 1864958..1865872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2684_1exon_2684_1Tribonema minus UTEX_B_3156 exonContig_7 1864958..1865872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2684CDS_2684Tribonema minus UTEX_B_3156 CDSContig_7 1864958..1865872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158737Trimin1|158737|e_gw1.7.202.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1864958..1865872 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Trimin1|158737|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_7:1864958..1865872- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTGCGTCTCCGCGGCTGGCGGCAAGGGCACCACCATCAAGCAGCT
GCCGTGTTCCGATGCCGTCTTCAACGATGGCGCAAAGGCCGGCCTTTGGA
CGCTGGTCGACGCGTCAAAGTGTTGGGAGGACGACACGATTTGTGGCGTC
GGCAGCACGTGCAGCAACTGCTGCAATAAGGCCTACTCAGCGGCTGGCAC
TAAGTGTGGTGGTGGGTGTTGGGAAAATGGCGAGCGTTGCGGCCTTGGCA
CCACCTGCAACCTTTGTTGCAACGCCAGCAGCTTCTGGTACGGATTAGGC
TTCACTGCCTGCGGCACCGAGCCTTGCTGGAAGGATGGCTCGACCTGCGG
TGCCGGCACCACTTGTACCCAGTGCTGCAACAAAGCTTTCAATGCGCTGG
GCACTCAGTGTGGTGGCAGCTGTTGGGGGGACGGCACCGTGTGCGGCGCC
GGCACCACCTGTAACCTTTGTTGCAACAAAGCTTTCAATGCGCTGGGCAC
TCAGTGTGGTGGCAGCTGCTGGGGCGATGGCACGTCGTGCGCCAGCGGCA
CTACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCTCGGACAACTC
TTTACTGCCTGCGGTACGGAGCCGTGCTGGGGGGATGGCACAGTGTGCAG
CGCCGGCACCACATGCAGCAAATGCTGCCACACAGCTTATGATGCACTGG
GCACTAAGTGCGGTGGTAGCTGCTGGGGCGATGGCACGTTGTGCGGCGCC
GGCACCACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCCCGGTAA
GGCCTTCACAGCCTGCGGCACCGAGCCTTGCTGGCCATCTGGTACATTTT
GTTTCCTTGGCACTTCATGCAGTCAGTGCTGTAATGGTAGCAACTGGCGG
TCTGTATGCAACTGA
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protein sequence of jgi.p|Trimin1|158737

>Trimin1|158737|e_gw1.7.202.1 ID=Trimin1|158737|e_gw1.7.202.1|Name=jgi.p|Trimin1|158737|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=305bp
MLCVSAAGGKGTTIKQLPCSDAVFNDGAKAGLWTLVDASKCWEDDTICGV
GSTCSNCCNKAYSAAGTKCGGGCWENGERCGLGTTCNLCCNASSFWYGLG
FTACGTEPCWKDGSTCGAGTTCTQCCNKAFNALGTQCGGSCWGDGTVCGA
GTTCNLCCNKAFNALGTQCGGSCWGDGTSCASGTTCNLCCNASSYWLGQL
FTACGTEPCWGDGTVCSAGTTCSKCCHTAYDALGTKCGGSCWGDGTLCGA
GTTCNLCCNASSYWPGKAFTACGTEPCWPSGTFCFLGTSCSQCCNGSNWR
SVCN*
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mRNA from alignment at Contig_7:1864958..1865872-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Trimin1|158737|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_7:1864958..1865872- (Tribonema minus UTEX_B_3156 )
ATGTTGTGCGTCTCCGCGGCTGGCGGCAAGGGCACCACCATCAAGCAGCT
GCCGTGTTCCGATGCCGTCTTCAACGATGGCGCAAAGGCCGGCCTTTGGA
CGCTGGTCGACGCGTCAAAGTGTTGGGAGGACGACACGATTTGTGGCGTC
GGCAGCACGTGCAGCAACTGCTGCAATAAGGCCTACTCAGCGGCTGGCAC
TAAGTGTGGTGGTGGGTGTTGGGAAAATGGCGAGCGTTGCGGCCTTGGCA
CCACCTGCAACCTTTGTTGCAACGCCAGCAGCTTCTGGTACGGATTAGGC
TTCACTGCCTGCGGCACCGAGCCTTGCTGGAAGGATGGCTCGACCTGCGG
TGCCGGCACCACTTGTACCCAGTGCTGCAACAAAGCTTTCAATGCGCTGG
GCACTCAGTGTGGTGGCAGCTGTTGGGGGGACGGCACCGTGTGCGGCGCC
GGCACCACCTGTAACCTTTGTTGCAACAAAGCTTTCAATGCGCTGGGCAC
TCAGTGTGGTGGCAGCTGCTGGGGCGATGGCACGTCGTGCGCCAGCGGCA
CTACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCTCGGACAACTC
TTTACTGCCTGCGGTACGGAGCCGTGCTGGGGGGATGGCACAGTGTGCAG
CGCCGGCACCACATGCAGCAAATGCTGCCACACAGCTTATGATGCACTGG
GCACTAAGTGCGGTGGTAGCTGCTGGGGCGATGGCACGTTGTGCGGCGCC
GGCACCACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCCCGGTAA
GGCCTTCACAGCCTGCGGCACCGAGCCTTGCTGGCCATCTGGTACATTTT
GTTTCCTTGGCACTTCATGCAGTCAGTGCTGTAATGGTAGCAACTGGCGG
TCTGTATGCAACTGA
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Coding sequence (CDS) from alignment at Contig_7:1864958..1865872-

>mRNA_2684 ID=mRNA_2684|Name=jgi.p|Trimin1|158737|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=915bp|location=Sequence derived from alignment at Contig_7:1864958..1865872- (Tribonema minus UTEX_B_3156 )
ATGTTGTGCGTCTCCGCGGCTGGCGGCAAGGGCACCACCATCAAGCAGCT
GCCGTGTTCCGATGCCGTCTTCAACGATGGCGCAAAGGCCGGCCTTTGGA
CGCTGGTCGACGCGTCAAAGTGTTGGGAGGACGACACGATTTGTGGCGTC
GGCAGCACGTGCAGCAACTGCTGCAATAAGGCCTACTCAGCGGCTGGCAC
TAAGTGTGGTGGTGGGTGTTGGGAAAATGGCGAGCGTTGCGGCCTTGGCA
CCACCTGCAACCTTTGTTGCAACGCCAGCAGCTTCTGGTACGGATTAGGC
TTCACTGCCTGCGGCACCGAGCCTTGCTGGAAGGATGGCTCGACCTGCGG
TGCCGGCACCACTTGTACCCAGTGCTGCAACAAAGCTTTCAATGCGCTGG
GCACTCAGTGTGGTGGCAGCTGTTGGGGGGACGGCACCGTGTGCGGCGCC
GGCACCACCTGTAACCTTTGTTGCAACAAAGCTTTCAATGCGCTGGGCAC
TCAGTGTGGTGGCAGCTGCTGGGGCGATGGCACGTCGTGCGCCAGCGGCA
CTACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCTCGGACAACTC
TTTACTGCCTGCGGTACGGAGCCGTGCTGGGGGGATGGCACAGTGTGCAG
CGCCGGCACCACATGCAGCAAATGCTGCCACACAGCTTATGATGCACTGG
GCACTAAGTGCGGTGGTAGCTGCTGGGGCGATGGCACGTTGTGCGGCGCC
GGCACCACCTGCAACCTTTGTTGCAATGCCAGCAGCTACTGGCCCGGTAA
GGCCTTCACAGCCTGCGGCACCGAGCCTTGCTGGCCATCTGGTACATTTT
GTTTCCTTGGCACTTCATGCAGTCAGTGCTGTAATGGTAGCAACTGGCGG
TCTGTATGCAACTGA
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