mRNA_268 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157254
Unique NamemRNA_268
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: A0A835YWP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP7_9STRA)

HSP 1 Score: 363 bits (933), Expect = 5.870e-127
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:    1 MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK 567
            MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK
Sbjct:    1 MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK 189
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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: Q8QNH0_ESV1K (EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH0_ESV1K)

HSP 1 Score: 66.2 bits (160), Expect = 6.560e-10
Identity = 61/188 (32.45%), Postives = 99/188 (52.66%), Query Frame = 1 
Query:    7 CVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGR----GQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALY------VKAGVPVRFVSPREKFKVLAAVAAADPS--LAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALAS-NAKLDDICDAATMAF 531
            C +ID+G++NLA CVTE V  +      +   + R      +E ++ +   L++   A  DA R   L  V IEQQ +R AVKN  ++    A +         G  + FVSP++KF   AAV  A P   L+ ++F R +GR+ +K+  +++A+ L  +++ +V L A+     KLDD+ DA   +F
Sbjct:   10 CASIDIGVVNLAFCVTEFVSRIDGTFDFDLVHVQRVKIGNTRETMHDLGKKLLSFFSA-SDALRHEKLDYVFIEQQLSR-AVKNIVLSYITMAYFETKRIGCSDGTKISFVSPKKKF---AAVRYAFPENVLSSINFER-RGRE-LKKLTVEVARLLFTEFDVKVGLDAVTKYGTKLDDVSDAFLQSF 190
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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: D8LPD8_ECTSI (EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.740e-9
Identity = 64/189 (33.86%), Postives = 100/189 (52.91%), Query Frame = 1 
Query:    7 CVAIDVGILNLAVCVTEDVGGVPV-----VRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGV------PVRFVSPREKFKVLAAVAAADPS--LAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNA-KLDDICDAATMAF 531
            C +ID+G++NLA CVTE V          +   ++  IG   +E I  +   L++ + A  DA R   L  V IEQQ +R AVKN  ++    A +    +       + FVSP+ KF   AAV  A P   L+ ++F R +GR+ +K+  +++A+ L   +  +V L A+A+N  KLDD+ DA   +F
Sbjct:   10 CASIDIGVINLAFCVTEFVSRTDGSFDFDLLHAQRVKIGN-TRETIRDLGRKLLSFLSA-SDALRHDKLDYVFIEQQLSR-AVKNIVLSYITMAYFETKRIGCGDSTKIVFVSPKNKF---AAVRYAFPKGVLSSINFER-RGRE-LKKLTVEVARLLFTAFGVKVGLDAMATNGTKLDDVSDAFLQSF 190
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157254 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YWP7_9STRA5.870e-127100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q8QNH0_ESV1K6.560e-1032.45EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD8_ECTSI1.740e-933.86EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:851964..852533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157254|e_gw1.3.349.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-108 resolvase
Ec32 orthologEc-06_005740.1
TranscriptId157576
TrackFilteredModels1
ProteinId157254
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157254gene_268Tribonema minus UTEX_B_3156 geneContig_3 851964..852533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_268_1exon_268_1Tribonema minus UTEX_B_3156 exonContig_3 851964..852533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_268CDS_268Tribonema minus UTEX_B_3156 CDSContig_3 851964..852533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157254Trimin1|157254|e_gw1.3.349.1Tribonema minus UTEX_B_3156 polypeptideContig_3 851964..852533 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_268 ID=mRNA_268|Name=jgi.p|Trimin1|157254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_3:851964..852533- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCGTGGCCATCGACGTCGGCATTCTGAACCTTGCGGTGTGCGT
GACGGAGGACGTCGGGGGTGTGCCCGTCGTGCGGGCGTGCGAGAAGTTCG
CCATCGGCCGCGGACAGAAGGAGCCCATCAACAAGGTGCTGGACCTCCTG
GTCGCGCTGATGGAAGCGAGGCAGGACGCGTTCCGCCCTGCGAACTTGAC
TCAGGTTGTCATCGAGCAGCAGTGCGCTCGCCTGGCCGTCAAGAACTTTG
CCATCGCCTCCGCCCTCTACGCGCTCTACGTCAAGGCCGGAGTGCCCGTG
AGGTTCGTCAGCCCCCGCGAGAAGTTCAAGGTGCTGGCGGCCGTGGCCGC
CGCGGATCCCTCGCTGGCGCACCTGGACTTCTCGAGGACCAAGGGCAGGA
AGAGCATCAAGCAGTTCGGCATCGACCTGGCGCAGGCGCTGGCCCGCAAG
TGGGAGTGCGAGGTGCTGCTTCAGGCCCTGGCCTCCAACGCCAAGCTGGA
CGACATCTGCGACGCGGCGACCATGGCCTTCACTGAATGCGTCAAGTGCG
GCGGCGTCGCGGGCAAGTGA
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protein sequence of jgi.p|Trimin1|157254

>Trimin1|157254|e_gw1.3.349.1 ID=Trimin1|157254|e_gw1.3.349.1|Name=jgi.p|Trimin1|157254|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp
MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLL
VALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPV
RFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARK
WECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK*
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mRNA from alignment at Contig_3:851964..852533-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_268 ID=mRNA_268|Name=jgi.p|Trimin1|157254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_3:851964..852533- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCGTGGCCATCGACGTCGGCATTCTGAACCTTGCGGTGTGCGT
GACGGAGGACGTCGGGGGTGTGCCCGTCGTGCGGGCGTGCGAGAAGTTCG
CCATCGGCCGCGGACAGAAGGAGCCCATCAACAAGGTGCTGGACCTCCTG
GTCGCGCTGATGGAAGCGAGGCAGGACGCGTTCCGCCCTGCGAACTTGAC
TCAGGTTGTCATCGAGCAGCAGTGCGCTCGCCTGGCCGTCAAGAACTTTG
CCATCGCCTCCGCCCTCTACGCGCTCTACGTCAAGGCCGGAGTGCCCGTG
AGGTTCGTCAGCCCCCGCGAGAAGTTCAAGGTGCTGGCGGCCGTGGCCGC
CGCGGATCCCTCGCTGGCGCACCTGGACTTCTCGAGGACCAAGGGCAGGA
AGAGCATCAAGCAGTTCGGCATCGACCTGGCGCAGGCGCTGGCCCGCAAG
TGGGAGTGCGAGGTGCTGCTTCAGGCCCTGGCCTCCAACGCCAAGCTGGA
CGACATCTGCGACGCGGCGACCATGGCCTTCACTGAATGCGTCAAGTGCG
GCGGCGTCGCGGGCAAGTGA
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Coding sequence (CDS) from alignment at Contig_3:851964..852533-

>mRNA_268 ID=mRNA_268|Name=jgi.p|Trimin1|157254|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=570bp|location=Sequence derived from alignment at Contig_3:851964..852533- (Tribonema minus UTEX_B_3156 )
ATGCTGTGCGTGGCCATCGACGTCGGCATTCTGAACCTTGCGGTGTGCGT
GACGGAGGACGTCGGGGGTGTGCCCGTCGTGCGGGCGTGCGAGAAGTTCG
CCATCGGCCGCGGACAGAAGGAGCCCATCAACAAGGTGCTGGACCTCCTG
GTCGCGCTGATGGAAGCGAGGCAGGACGCGTTCCGCCCTGCGAACTTGAC
TCAGGTTGTCATCGAGCAGCAGTGCGCTCGCCTGGCCGTCAAGAACTTTG
CCATCGCCTCCGCCCTCTACGCGCTCTACGTCAAGGCCGGAGTGCCCGTG
AGGTTCGTCAGCCCCCGCGAGAAGTTCAAGGTGCTGGCGGCCGTGGCCGC
CGCGGATCCCTCGCTGGCGCACCTGGACTTCTCGAGGACCAAGGGCAGGA
AGAGCATCAAGCAGTTCGGCATCGACCTGGCGCAGGCGCTGGCCCGCAAG
TGGGAGTGCGAGGTGCTGCTTCAGGCCCTGGCCTCCAACGCCAAGCTGGA
CGACATCTGCGACGCGGCGACCATGGCCTTCACTGAATGCGTCAAGTGCG
GCGGCGTCGCGGGCAAGTGA
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