Trimin1|157254|e_gw1.3.349.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|157254
Unique Name	Trimin1\|157254\|e_gw1.3.349.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	190

Homology

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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: A0A835YWP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP7_9STRA)

HSP 1 Score: 363 bits (933), Expect = 5.870e-127
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0

Query:    1 MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK 189
            MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK
Sbjct:    1 MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPVRFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK 189

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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: Q8QNH0_ESV1K (EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH0_ESV1K)

HSP 1 Score: 66.2 bits (160), Expect = 6.560e-10
Identity = 61/188 (32.45%), Postives = 99/188 (52.66%), Query Frame = 0

Query:    3 CVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGR----GQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALY------VKAGVPVRFVSPREKFKVLAAVAAADPS--LAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALAS-NAKLDDICDAATMAF 177
            C +ID+G++NLA CVTE V  +      +   + R      +E ++ +   L++   A  DA R   L  V IEQQ +R AVKN  ++    A +         G  + FVSP++KF   AAV  A P   L+ ++F R +GR+ +K+  +++A+ L  +++ +V L A+     KLDD+ DA   +F
Sbjct:   10 CASIDIGVVNLAFCVTEFVSRIDGTFDFDLVHVQRVKIGNTRETMHDLGKKLLSFFSA-SDALRHEKLDYVFIEQQLSR-AVKNIVLSYITMAYFETKRIGCSDGTKISFVSPKKKF---AAVRYAFPENVLSSINFER-RGRE-LKKLTVEVARLLFTEFDVKVGLDAVTKYGTKLDDVSDAFLQSF 190

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BLAST of jgi.p|Trimin1|157254 vs. uniprot
Match: D8LPD8_ECTSI (EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.740e-9
Identity = 64/189 (33.86%), Postives = 100/189 (52.91%), Query Frame = 0

Query:    3 CVAIDVGILNLAVCVTEDVGGVPV-----VRACEKFAIGRGQKEPINKVLDLLVALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGV------PVRFVSPREKFKVLAAVAAADPS--LAHLDFSRTKGRKSIKQFGIDLAQALARKWECEVLLQALASNA-KLDDICDAATMAF 177
            C +ID+G++NLA CVTE V          +   ++  IG   +E I  +   L++ + A  DA R   L  V IEQQ +R AVKN  ++    A +    +       + FVSP+ KF   AAV  A P   L+ ++F R +GR+ +K+  +++A+ L   +  +V L A+A+N  KLDD+ DA   +F
Sbjct:   10 CASIDIGVINLAFCVTEFVSRTDGSFDFDLLHAQRVKIGN-TRETIRDLGRKLLSFLSA-SDALRHDKLDYVFIEQQLSR-AVKNIVLSYITMAYFETKRIGCGDSTKIVFVSPKNKF---AAVRYAFPKGVLSSINFER-RGRE-LKKLTVEVARLLFTAFGVKVGLDAMATNGTKLDDVSDAFLQSF 190

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|157254 vs. uniprot

BLAST of jgi.p|Trimin1|157254 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YWP7_9STRA	5.870e-127	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
Q8QNH0_ESV1K	6.560e-10	32.45	EsV-1-108 n=1 Tax=Ectocarpus siliculosus virus 1 (...	[more]
D8LPD8_ECTSI	1.740e-9	33.86	EsV-1-108 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..178

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_3	contig	Contig_3:851964..852533 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|157254	mRNA_268	Tribonema minus UTEX_B_3156	mRNA	Contig_3 851964..852533 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|157254|e_gw1.3.349.1 ID=Trimin1|157254|e_gw1.3.349.1|Name=jgi.p|Trimin1|157254|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp
MLCVAIDVGILNLAVCVTEDVGGVPVVRACEKFAIGRGQKEPINKVLDLL
VALMEARQDAFRPANLTQVVIEQQCARLAVKNFAIASALYALYVKAGVPV
RFVSPREKFKVLAAVAAADPSLAHLDFSRTKGRKSIKQFGIDLAQALARK
WECEVLLQALASNAKLDDICDAATMAFTECVKCGGVAGK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf