mRNA_2595 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158770
Unique NamemRNA_2595
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A835YL21_9STRA (HopJ type III effector protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL21_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.890e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 MSVAGVDTPSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            MSVAGVDTPSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK
Sbjct:    1 MSVAGVDTPSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 123          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A7S3XKA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKA2_HETAK)

HSP 1 Score: 141 bits (356), Expect = 1.860e-40
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   25 PSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            P  +  F  +L  + D V FE+TM +I++NY++  KPF NG++ NAAG N GSCKVFSFGKLA L E  TL+CFG+HYRDVL+DP G AH NIR+FM  GW G+ F EG+ LT K
Sbjct:   60 PRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 174          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A1H4GGC3_9GAMM (HopJ type III effector protein n=2 Tax=Marinobacterium georgiense TaxID=48076 RepID=A0A1H4GGC3_9GAMM)

HSP 1 Score: 129 bits (323), Expect = 2.900e-36
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   40 AFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            AF+ARL    D++ FEDTM VI+ ++++AP  F NG++ N AG NEGSCK+F FGKL  LDEA TL+CFG+ YRDVLA P G  H NIR+FM++GW G+ F EG  L  K
Sbjct:    5 AFSARLGT-DDSIDFEDTMAVISEHFDYAPCAFNNGEIFNEAGQNEGSCKIFGFGKLMELDEAQTLACFGRFYRDVLATPDGTDHGNIRNFMQSGWAGIQF-EGEPLRRK 112          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A813DTD3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTD3_POLGL)

HSP 1 Score: 138 bits (348), Expect = 1.670e-35
Identity = 69/131 (52.67%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   10 AGVDTP-----------SSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            AGVD P           S I A  AR +     + F +T+  IAA++E+ PK F NG V +AAG+NEGSCKVFS GKLA   EA  L+CFG+HY+ VL DPAG +H NIR+FM+ GW GV FP+GVAL P 
Sbjct:  454 AGVDFPDGVALEPSGALSGIKALRARFSAGQSELAFAETLAAIAADFEYTPKRFVNGGVESAAGSNEGSCKVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMKHGWAGVDFPDGVALEPS 584          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A813DYZ3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DYZ3_POLGL)

HSP 1 Score: 127 bits (319), Expect = 5.470e-35
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   64 ASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            A   + F +T+  IAA++E+ PK F NG V +AAG+NEGSC+VFS GKLA   EA  L+CFG+HY+ VL DPAG +H NIR+FM+ GW  V FP+ VAL P 
Sbjct:   19 AGQELAFAETLAAIAADFEYTPKQFVNGGVESAAGSNEGSCEVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMKHGWAVVDFPDSVALEPS 120          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A2E9DDM5_9GAMM (Type III effector n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DDM5_9GAMM)

HSP 1 Score: 123 bits (308), Expect = 5.360e-34
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   70 DAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            + + FED +  I  ++E+ P  F NGD+HN AG NEGSCK+ +FG+LA L EA TL+CFG+ YRDVLA P G+ H NIR+FM+ GW G+ F EG+ L P+
Sbjct:   14 ETIDFEDVIAFIGEHFEYTPCAFRNGDLHNEAGQNEGSCKILAFGQLAGLSEAQTLACFGRFYRDVLATPEGSDHGNIRNFMDKGWSGIRF-EGIPLAPR 112          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: UPI00135B0755 (HopJ type III effector protein n=2 Tax=Vibrio atypicus TaxID=558271 RepID=UPI00135B0755)

HSP 1 Score: 123 bits (308), Expect = 5.690e-34
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   76 VTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRD-VLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            V FE TM VI ANYEF+P  FTNG  HN AG N GSCK+F+FG L  LD  +TL+CFG+ YRD VL +P G  HANIR+FME+GWGGV F +  ALT K
Sbjct:   17 VDFEQTMAVIDANYEFSPTSFTNGQTHNEAGQNSGSCKIFAFGLLNELDAEATLACFGRFYRDDVLGNPEGNDHANIRNFMESGWGGVKF-DSPALTVK 114          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A7U8C6L3_NEPCE (Uncharacterized protein n=1 Tax=Neptuniibacter caesariensis TaxID=207954 RepID=A0A7U8C6L3_NEPCE)

HSP 1 Score: 122 bits (307), Expect = 7.610e-34
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   82 FEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            FEDTM+VIA NY +    F+NGDVHN AGTNEGSCK+F+F KL  L+E  TL CFG+ Y+DVL  P G  H NIR+FM+ GW G++F E VAL  K
Sbjct:   18 FEDTMQVIADNYIYTASAFSNGDVHNEAGTNEGSCKIFAFAKLNGLEEEKTLKCFGRFYQDVLNTPEGDDHGNIRNFMKHGWSGINF-ESVALVAK 112          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A0A5JFR4_PHOS4 (Type III effector n=4 Tax=Vibrio TaxID=662 RepID=A0A0A5JFR4_PHOS4)

HSP 1 Score: 122 bits (306), Expect = 1.150e-33
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   34 ISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYR-DVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            ++AF  +L Q  + V FE T+ VI A Y+F P  FTNG   N AG N GSCK+F+FGKL  LD+ASTL+CFG+ YR DVL +P G  HANIR+F+++GW GVHF  G AL  K
Sbjct:    3 LNAFIEKLNQQPEQVEFEQTIAVIDAYYDFVPTSFTNGSTRNDAGQNNGSCKIFAFGKLNGLDKASTLACFGRFYRQDVLENPDGEDHANIRNFIQSGWDGVHF-NGEALIAK 114          
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Match: A0A6S6S0H3_9GAMM (Type III effector HopPmaJ n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6S0H3_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 2.240e-33
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   67 SDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 369
            S+++ F D +  I ANYE+ P+ F NG+V NAAGTNEGSCKVF+F +L  L +  TL+CF +HYR VLA P G  H NIR+FME GW G++F  GVAL  K
Sbjct:   14 SESLVFSDVIAAIDANYEYTPQTFKNGEVENAAGTNEGSCKVFAFAQLNDLSQEQTLTCFAEHYRSVLATPEGNDHGNIRNFMETGWDGINFT-GVALQAK 113          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158770 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL21_9STRA1.890e-82100.00HopJ type III effector protein n=1 Tax=Tribonema m... [more]
A0A7S3XKA2_HETAK1.860e-4057.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1H4GGC3_9GAMM2.900e-3657.27HopJ type III effector protein n=2 Tax=Marinobacte... [more]
A0A813DTD3_POLGL1.670e-3552.67Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813DYZ3_POLGL5.470e-3555.88Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2E9DDM5_9GAMM5.360e-3454.00Type III effector n=2 Tax=Oceanospirillaceae TaxID... [more]
UPI00135B07555.690e-3462.63HopJ type III effector protein n=2 Tax=Vibrio atyp... [more]
A0A7U8C6L3_NEPCE7.610e-3460.42Uncharacterized protein n=1 Tax=Neptuniibacter cae... [more]
A0A0A5JFR4_PHOS41.150e-3355.75Type III effector n=4 Tax=Vibrio TaxID=662 RepID=A... [more]
A0A6S6S0H3_9GAMM2.240e-3356.44Type III effector HopPmaJ n=1 Tax=uncultured Thiot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1100041..1101435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158770|e_gw1.7.237.1
Descriptiontype III effector
COG categoryS
Max annot lvl135619|Oceanospirillales
EggNOG OGs2C9B9@1|root,32RP0@2|Bacteria,1MZKM@1224|Proteobacteria,1S8UZ@1236|Gammaproteobacteria,1XKNC@135619|Oceanospirillales
Evalue1.25e-34
Seed ortholog207954.MED92_14468
Hectar predicted targeting categoryother localisation
TranscriptId159092
TrackFilteredModels1
ProteinId158770
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158770gene_2595Tribonema minus UTEX_B_3156 geneContig_7 1100041..1101435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2595_1exon_2595_1Tribonema minus UTEX_B_3156 exonContig_7 1100041..1100174 +
exon_2595_2exon_2595_2Tribonema minus UTEX_B_3156 exonContig_7 1100409..1100451 +
exon_2595_3exon_2595_3Tribonema minus UTEX_B_3156 exonContig_7 1101241..1101435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2595CDS_2595Tribonema minus UTEX_B_3156 CDSContig_7 1100041..1100174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158770Trimin1|158770|e_gw1.7.237.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1100041..1101435 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Trimin1|158770|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_7:1100041..1101435+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTAGCTGGCGTTGACACCCCTTCGAGCATCAGTGCCTTCGCAGC
TAGACTGGCGCAGGCCTCCGACGCTGTCACTTTCGAGGACACCATGGAGG
TCATCGCCGCCAACTACGAGTTTGCGCCCAAACCGTTCACCAACGGCGAC
GTGCACAATGCAGCAGGCACCAATGAGGGGTCCTGCAAGGTGTTCTCCTT
CGGCAAGCTGGCGGCGCTCGACGAGGCCTCCACGCTCAGCTGCTTCGGGC
AGCACTACCGCGACGTGCTCGCGGACCCCGCCGGCGCCGCGCACGCCAAC
ATCCGCAGCTTCATGGAGGCCGGGTGGGGGGGCGTGCACTTCCCCGAGGG
GGTCGCGCTGACCCCCAAGTGA
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protein sequence of jgi.p|Trimin1|158770

>Trimin1|158770|e_gw1.7.237.1 ID=Trimin1|158770|e_gw1.7.237.1|Name=jgi.p|Trimin1|158770|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
MSVAGVDTPSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGD
VHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHAN
IRSFMEAGWGGVHFPEGVALTPK*
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mRNA from alignment at Contig_7:1100041..1101435+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Trimin1|158770|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1395bp|location=Sequence derived from alignment at Contig_7:1100041..1101435+ (Tribonema minus UTEX_B_3156 )
ATGTCAGTAGCTGGCGTTGACACCCCTTCGAGCATCAGTGCCTTCGCAGC TAGACTGGCGCAGGCCTCCGACGCTGTCACTTTCGAGGACACCATGGAGG TCATCGCCGCCAACTACGAGTTTGCGCCCAAACCGTAAGTTGAATCTGCG TTCATGCTCTCGTCGCAACCATTGTTCGGCAATTGTGGCTATGTTTGTGC GTTTTCCATCGCTTCATGGTTGCATCTGAGCGAGCAGTCCATTATCATAC TTCCTGGTCAGGTGGACTTTGACCTATACATCAATATTCAACTTAAATCT TATACGTCGTGACTTTAGCACGCATCGACTCTCACAGCAGCCCTGTTGGT GCGATTTCATGGCTGCAGGTTCACCAACGGCGACGTGCACAATGCAGCAG GCACCAATGAGGTACGCTGTCTCTGCATGTCGTGCTGTCTGCAATAGCAG CAGTTGATCGAAGCCATCAGCGCTGGTTGCCTACACTCAAAGTCTCAAGC TTCACATTATGTGCAACACCACACCTTTGCTCTGATTATCGCTCATTTCA CTGAATACCACAATGCAGTCGATCTGAGGGGCCATGGCACTGAAACTTGC AGTGTATTGTGCTGTCACCTTCAGCTTCTTCTAGAACTTTCAGCTGAGAT TTTGTCGCCACTTCAACTCTTATGTGCACAGTTTGGCGCAAGGCCGTATG GAGAGGCAGAGTCAAACGACAAGGCGCCATTGCCTTCTTCGCTGCCTTAT GCCCTAGCAAAAGTGACCACAGTGGATGTTGCAAGCCAATTGTTGTAATC AATATACTTCTGCAACAACAGTCGTCGCCGCCAGCCTGTGACTTGCGCCG TCAAAGCTGAGTGCGCACTGATGACAACGTACTCCAATTCGGCCTTACAT TGTGAATGACTGCTCTTGCCACTACCATGAACCGAGGCTTGTGTCGAAAC GCACCCGAGCCAGGTGAAGCGCGGGCTGGGCTACCGCTGCTGCAGCACTC CAGGGACACCACATTCCCAGCGTCGGCTCAACACTGAGGTTGCTCGAGCA GCGTGCTACTTGAATCACCGCAGTACAGCGCACACAACATCATCATCAGC AGCAGCAGTGCTCGGCGCGTCCCTGCGCCGCCAGTGCCTCCGCAGCCCTC ACTCACCACTGTACACTTGCGACGCGCGCTCTGACGACCGCCGCGCGCAG GGGTCCTGCAAGGTGTTCTCCTTCGGCAAGCTGGCGGCGCTCGACGAGGC CTCCACGCTCAGCTGCTTCGGGCAGCACTACCGCGACGTGCTCGCGGACC CCGCCGGCGCCGCGCACGCCAACATCCGCAGCTTCATGGAGGCCGGGTGG GGGGGCGTGCACTTCCCCGAGGGGGTCGCGCTGACCCCCAAGTGA
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Coding sequence (CDS) from alignment at Contig_7:1100041..1101435+

>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Trimin1|158770|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_7:1100041..1101435+ (Tribonema minus UTEX_B_3156 )
ATGTCAGTAGCTGGCGTTGACACCCCTTCGAGCATCAGTGCCTTCGCAGC
TAGACTGGCGCAGGCCTCCGACGCTGTCACTTTCGAGGACACCATGGAGG
TCATCGCCGCCAACTACGAGTTTGCGCCCAAACCGTTCACCAACGGCGAC
GTGCACAATGCAGCAGGCACCAATGAGGGGTCCTGCAAGGTGTTCTCCTT
CGGCAAGCTGGCGGCGCTCGACGAGGCCTCCACGCTCAGCTGCTTCGGGC
AGCACTACCGCGACGTGCTCGCGGACCCCGCCGGCGCCGCGCACGCCAAC
ATCCGCAGCTTCATGGAGGCCGGGTGGGGGGGCGTGCACTTCCCCGAGGG
GGTCGCGCTGACCCCCAAGTGA
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