mRNA_2548 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158841
Unique NamemRNA_2548
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A835YKZ4_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ4_9STRA)

HSP 1 Score: 550 bits (1417), Expect = 1.930e-197
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1 
Query:    1 MSLSIPSDPLSPACYPPPPPHPPLRARSYEETVAFSAYVNQAVGAAPQLAHRLPIAPATLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQLVSAAAAAVTARWQC 864
            MSLSIPSDPLSPACYPPPPPHPPLRARSYEETVAFSAYVNQAVGAAPQLAHRLPIAPATLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQLVSAAAAAVTARWQC
Sbjct:    1 MSLSIPSDPLSPACYPPPPPHPPLRARSYEETVAFSAYVNQAVGAAPQLAHRLPIAPATLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQLVSAAAAAVTARWQC 288
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BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A0D2U007_CAPO3 (Fimbrin n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U007_CAPO3)

HSP 1 Score: 164 bits (415), Expect = 8.040e-43
Identity = 100/249 (40.16%), Postives = 147/249 (59.04%), Query Frame = 1 
Query:   82 SYEETVAFSAYVNQAVGAAPQLAHRLPIAPA--TLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            S EE VAF  ++N  +G+   L  RLP+     +L +A  DG++LC LVN A   ++ ER IN+ + LS+++  EN   A+ + +A+GC +VNIGA D+ E    L+L L+WQ+I+  + +Q++LA CP L  L EPGE+     ALP +Q+LLRWFN+ L  AG  RR+ N   D+ D+ECY  LL+++     G    AL      +R  + + NA   D      + A  ITSGN +LN+AF+A L
Sbjct:  113 SDEEKVAFVDWINHVLGSDADLKSRLPLNENDDSLFKAVGDGILLCKLVNSAVKETIDERAINKTK-LSVYKTHENQTLALNSAKAIGCNIVNIGATDMCEGIPTLVLGLMWQVIRIGLFAQINLANCPGLVRLLEPGETLEDLMALPADQILLRWFNYHLREAGHPRRVTNFSGDIKDSECYTILLKQIAPRQLGIDTSALNERDLEKRAGKVLDNAEKMDCRK--FVRARDITSGNPKLNLAFVANL 358
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BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: D7FJH8_ECTSI (Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.590e-40
Identity = 103/255 (40.39%), Postives = 144/255 (56.47%), Query Frame = 1 
Query:   88 EETVAFSAYVNQAVGAAPQLAHRLPIAP--ATLVRACADGVVLCHLVNEAAAGSVPERLIN---RREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPR---RLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQLVS 828
            EE   F+ ++N  +   P L H +P+ P  A L  +  DGV++C +V  A  GS+ +  +N     EPLS+++A EN N A+ A    G  VVNIGA DI + +   +L L WQ+I+  + +Q++L  CP L  L E GES+ AF  LPVE++LLRWFNH L W G+ RR+ N   DLAD  CY  L++ L     G  V   E     R   R A  VI+ A   +G+A +I A HIT      N+AF+AQL++
Sbjct:  133 EEKAVFACHLNAHLVGDPFLTHLMPLDPGGADLFDSFKDGVLMCRIVCLAIPGSIADTNVNTPTNDEPLSLYKANENLNVALEAAEKHGLQVVNIGATDIIQGRPASILGLTWQLIRIHLLAQINLKGCPDLIHLMEGGESKEAFFELPVEEVLLRWFNHHLRWGGSERRVANFGDDLADGRCYVTLIKELNDKFKGEEVDPTEEEDAKRAQFRRACLVISGA-EGIGLAPLIRANHITGKAHLYNIAFVAQLLN 386
[Close]
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: F0ZP61_DICPU (Actin bundling protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZP61_DICPU)

HSP 1 Score: 152 bits (385), Expect = 1.340e-38
Identity = 91/249 (36.55%), Postives = 143/249 (57.43%), Query Frame = 1 
Query:   82 SYEETVAFSAYVNQAVGAAPQLAHRLPIAPA--TLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            S EE VA+  ++N  +     L  +LPI+       +AC DG++LC L+N+A   ++ ER++N++  L+ F+  EN    I + +A+GC VVNIGA D+ E +  L++ L WQIIK  + ++++L   P L  L +PGE+      LPVE++LLRWFN+ L  AG+ RR++N   D+ D+ECY  LL+++     G    AL      +R A  + NA    +G    +    I +G  +LN+AF+A L
Sbjct:  116 SDEEKVAYIDWINNCLAKDADLKGKLPISEDGDKFFQACHDGLLLCKLINDAVPDTIDERVLNKKN-LNAFRINENQVLCINSAKAIGCNVVNIGAGDLAEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLLKPGETIEDLLKLPVEEILLRWFNYHLEAAGSTRRVKNFSGDIKDSECYTVLLKQIAPKNAGVDTRALNESNPEKRAAIVLENA--DKIGCKKFLKPKDIVTGYQKLNLAFVANL 361
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BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A151ZRX4_9MYCE (Actin bundling protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZRX4_9MYCE)

HSP 1 Score: 150 bits (380), Expect = 6.420e-38
Identity = 94/253 (37.15%), Postives = 143/253 (56.52%), Query Frame = 1 
Query:   70 LRARSYEETVAFSAYVNQAVGAAPQLAHRLPIAPA--TLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            + + S EE VA+  ++N  +     L  +LPI+       +AC DG+VLC L+N+A   ++ ER++N++  L+ F+  EN    I + +A+GC VVNIGA D+ E +  LL+ L WQIIK  + ++++L   P L  L   GE+      LPVE++LLRWFN+ L  AG  RR++N   D+ D+E Y  LL+++   G G    AL      RR A  + NA    LG    +    + +GN +LN+AF+A L
Sbjct:  105 VHSYSDEEKVAYIDWINNCLSKDADLKGKLPISEDGDAFFKACYDGLVLCKLINDAVPDTIDERVLNKKN-LNTFRVNENQVLCINSAKAIGCNVVNIGASDLMEGRAHLLMGLTWQIIKIGLFARINLKNHPELYRLLLDGETIDDLLKLPVEEILLRWFNYHLAEAGHPRRVKNFTSDIKDSENYTILLKQIAPQGTGVDTRALSESNLDRRAAIMLENA--DKLGCKKFVRPRDVVNGNQKLNLAFVANL 354
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BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A8J4V8R4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V8R4_9MYCE)

HSP 1 Score: 149 bits (376), Expect = 2.370e-37
Identity = 90/249 (36.14%), Postives = 141/249 (56.63%), Query Frame = 1 
Query:   82 SYEETVAFSAYVNQAVGAAPQLAHRLPIAPA--TLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            S EE VA+  ++N  +     L  +LPI+       +AC DG++LC L+N+A   ++ ER++N++  L+ F+  EN    + + +A+GC +VNIGA D+ E +  L++ L WQIIK  + ++++L   P L  L + GE+      LPVE++LLRWFN+ L  AG  RR++N   D+ D+E Y  LL+++     G    AL      +R A  + NA    LG    +    I +GN +LNMAF+A L
Sbjct:  115 SDEEKVAYIDWINNCLAKDSDLKGKLPISEEGDAFFKACHDGLLLCKLINDAVPETIDERVLNKKN-LNTFRINENQVLCVNSAKAIGCNIVNIGATDLMEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLLQDGETIEDLLKLPVEEILLRWFNYHLAAAGHPRRVKNFGSDIKDSENYTVLLKQIAPANAGVDTRALNESSVDKRAAIVLENA--DKLGCKKFLKPRDIVNGNTKLNMAFVANL 360
[Close]
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A5C3L6R2_9AGAR (Fimbrin n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3L6R2_9AGAR)

HSP 1 Score: 148 bits (373), Expect = 8.480e-37
Identity = 93/250 (37.20%), Postives = 142/250 (56.80%), Query Frame = 1 
Query:   88 EETVAFSAYVNQAVGAAPQLAHRLPIAPATL--VRACADGVVLCHLVNEAAAGSVPERLINR---REPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            +E   F+ ++N  +   P + HR PI   T+     C DG+VLC L+N++   ++  R++N+   ++PL+ FQ TEN N  I++ + +GC VVNIGA D++E +  L+L ++WQII+  + +QV +   P L  L E GE+      L  +Q+LLRWFN+ L  AG  RR+ N  RD++D E Y  LL +L         L  +  RT    AE V+  A   +G    +  + +TSGN RLN+AF+A L
Sbjct:  113 DERSEFTNHINTVIENDPDVGHRYPIPTDTMQIFDECKDGLVLCKLINDSVPDTIDTRVLNKPTAKKPLNAFQITENNNIVISSAKGIGCSVVNIGASDLSEGREHLILGIIWQIIRRGLLAQVDIKLHPELYRLCEDGETIEDLLRLTPDQILLRWFNYHLKAAGWNRRVNNFSRDVSDGENYTILLNQLKPDECSRAPLQTKDLRTR---AEQVLQNA-DRIGCRKYLTPSSLTSGNPRLNLAFVANL 358
[Close]
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: FIMB_DICDI (Fimbrin n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=FIMB_DICDI)

HSP 1 Score: 146 bits (369), Expect = 2.290e-36
Identity = 91/249 (36.55%), Postives = 139/249 (55.82%), Query Frame = 1 
Query:   82 SYEETVAFSAYVNQAVGAAPQLAHRLPIAPA--TLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            S EE VA+  ++N  +     L  RLPI         AC DG++LC L+N+A   ++ ER++N++  L+ F+  EN    I + +A+GC VVNIGA D+ E +  L++ L WQIIK  + ++++L   P L  L   GE+      LPVE++LLRWFN+ L  AG+ RR++N   D+ D+ECY  LL+++     G    AL      +R  + + NA    LG    +    I +G  +LN+AF+A L
Sbjct:  115 SDEEKVAYIDWINNCLAKDVDLKSRLPIPEDGDKFFAACNDGLLLCKLINDAVPDTIDERVLNKKN-LNAFRINENQVLCINSAKAIGCNVVNIGAGDLVEGRAHLIMGLTWQIIKIGLFARINLTNHPELYRLLHDGETIEDLLKLPVEEILLRWFNYHLAAAGSQRRVKNFSGDIKDSECYTILLKQIAPKDAGVETSALNISNLDQRAVKVLENA--DKLGCKKFLKPKDIVTGFQKLNLAFVANL 360
[Close]
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: F4Q5R1_CAVFA (Actin bundling protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q5R1_CAVFA)

HSP 1 Score: 146 bits (369), Expect = 2.580e-36
Identity = 89/249 (35.74%), Postives = 142/249 (57.03%), Query Frame = 1 
Query:   82 SYEETVAFSAYVNQAVGAAPQLAHRLPIAP--ATLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            S +ET AF  ++N  +G    L  RLPI        +AC DG++LC L+N++   ++ ER++N++  L+ F+  EN    + + +A+GC  VNIGA D+ E +  L++ L+WQIIK  + ++++L   P L  L + GE+      LPVE++LLRWFN+ L  AG  RR++N   D+ D+E Y  LL+++     G    AL+     +R    + NA    LG    + A  I +G+ +LN+AF+A L
Sbjct:  130 SDDETHAFIDWINNCLGKDADLKDRLPIPEDGEAFFKACYDGLLLCKLINDSVPETIDERVLNKKN-LNTFRVNENQVLCVNSAKAIGCSTVNIGAADLMEGRAHLIMGLVWQIIKIGLFAKINLTNHPELYRLLQDGETIEDLLRLPVEEILLRWFNYHLAAAGHPRRVKNFTGDIKDSENYTVLLKQIAPKDAGVDTRALQENNLEKRAGLVLENA--DKLGCRKFLKARDIVNGHPKLNLAFVANL 375
[Close]
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Match: A0A507EKR5_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EKR5_9FUNG)

HSP 1 Score: 145 bits (365), Expect = 2.170e-35
Identity = 96/254 (37.80%), Postives = 139/254 (54.72%), Query Frame = 1 
Query:   88 EETVAFSAYVNQAVGAAPQLAHRLPIAPATL--VRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATENCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSLAACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDRDLADAECYAALLRRLGRGGGGARVLALERC-RTPRRL------AEHVINAAATDLGVAAVIHAAHITSGNARLNMAFIAQL 822
            +E  +F  ++NQ +GA   + HR PI   T+       DG++L  L+N++   ++ ER++N  + L+ FQ TEN N  + + +A+GC VVNIGA+D+ E +  L L L+WQIIK  + ++V L   P L  L E GE+   F  LPVEQ+LLRWFN+ L  AG AR++ N   D+ D E Y  LL +L          A   C R+P R       AE V+  A   +G    +    +  GN +LN AF+A L
Sbjct:  363 DEKQSFVEHINQVLGADKDIRHRFPIDLLTMQIFGEVKDGLILAKLINDSVPNTIDERVLNLGKKLNTFQMTENNNVVVNSAKAIGCSVVNIGAQDLIEGREHLALGLIWQIIKIGLQAKVDLKYHPELFRLLEDGETLEQFLKLPVEQILLRWFNYHLKKAGWARKVHNFSGDVKDGENYTVLLSQL----------APHLCDRSPLRTHDIYQRAEQVLGNA-DRMGCRKYLSPKTLVEGNQKLNFAFVANL 605
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158841 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKZ4_9STRA1.930e-197100.00Calponin homology domain-containing protein n=1 Ta... [more]
A0A0D2U007_CAPO38.040e-4340.16Fimbrin n=1 Tax=Capsaspora owczarzaki (strain ATCC... [more]
D7FJH8_ECTSI1.590e-4040.39Fimbrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH8... [more]
F0ZP61_DICPU1.340e-3836.55Actin bundling protein n=1 Tax=Dictyostelium purpu... [more]
A0A151ZRX4_9MYCE6.420e-3837.15Actin bundling protein n=1 Tax=Tieghemostelium lac... [more]
A0A8J4V8R4_9MYCE2.370e-3736.14Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A5C3L6R2_9AGAR8.480e-3737.20Fimbrin n=1 Tax=Coprinopsis marcescibilis TaxID=23... [more]
FIMB_DICDI2.290e-3636.55Fimbrin n=1 Tax=Dictyostelium discoideum TaxID=446... [more]
F4Q5R1_CAVFA2.580e-3635.74Actin bundling protein n=1 Tax=Cavenderia fascicul... [more]
A0A507EKR5_9FUNG2.170e-3537.80Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:711959..713924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158841|e_gw1.7.101.1
BRITEko00000,ko03400,ko04147,ko04812
KEGG koko:K17275,ko:K17276,ko:K17336
GOsGO:0001501,GO:0001726,GO:0001775,GO:0001891,GO:0001951,GO:0002065,GO:0002102,GO:0002252,GO:0002263,GO:0002285,GO:0002286,GO:0002366,GO:0002376,GO:0003008,GO:0003674,GO:0003779,GO:0005102,GO:0005178,GO:0005198,GO:0005200,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005884,GO:0005886,GO:0005903,GO:0005912,GO:0005924,GO:0005925,GO:0005938,GO:0006810,GO:0006928,GO:0006950,GO:0006955,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007423,GO:0007586,GO:0008092,GO:0008150,GO:0008544,GO:0008643,GO:0009611,GO:0009888,GO:0009913,GO:0009987,GO:0010033,GO:0010638,GO:0010737,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0019221,GO:0019899,GO:0022008,GO:0022411,GO:0022600,GO:0022607,GO:0022617,GO:0023052,GO:0030029,GO:0030036,GO:0030054,GO:0030055,GO:0030154,GO:0030175,GO:0030182,GO:0030198,GO:0030855,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031252,GO:0031334,GO:0031344,GO:0032386,GO:0032420,GO:0032421,GO:0032432,GO:0032501,GO:0032502,GO:0032530,GO:0032532,GO:0032535,GO:0032536,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0034097,GO:0035315,GO:0035556,GO:0035722,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0042110,GO:0042221,GO:0042490,GO:0042491,GO:0042802,GO:0042995,GO:0043005,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043583,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044877,GO:0045321,GO:0045927,GO:0046649,GO:0046872,GO:0048513,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0050892,GO:0050896,GO:0051015,GO:0051017,GO:0051020,GO:0051049,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051639,GO:0051674,GO:0051716,GO:0051764,GO:0060113,GO:0060341,GO:0060348,GO:0060429,GO:0060563,GO:0061572,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070671,GO:0070887,GO:0070925,GO:0071310,GO:0071345,GO:0071349,GO:0071702,GO:0071801,GO:0071803,GO:0071840,GO:0071944,GO:0090066,GO:0090087,GO:0097435,GO:0097458,GO:0098858,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0106001,GO:0120025,GO:0120035,GO:1902115,GO:1902117,GO:1902896,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477,GO:1990357
Preferred namePLS3
Descriptionactin filament network formation
COG categoryZ
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG5069@1|root,KOG0046@2759|Eukaryota,38BRY@33154|Opisthokonta
Evalue1.32e-43
Seed ortholog192875.XP_004365025.1
Hectar predicted targeting categoryother localisation
TranscriptId159163
TrackFilteredModels1
ProteinId158841
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158841gene_2548Tribonema minus UTEX_B_3156 geneContig_7 711959..713924 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2548_1exon_2548_1Tribonema minus UTEX_B_3156 exonContig_7 711959..712342 +
exon_2548_2exon_2548_2Tribonema minus UTEX_B_3156 exonContig_7 713028..713242 +
exon_2548_3exon_2548_3Tribonema minus UTEX_B_3156 exonContig_7 713657..713924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2548CDS_2548Tribonema minus UTEX_B_3156 CDSContig_7 711959..712342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158841Trimin1|158841|e_gw1.7.101.1Tribonema minus UTEX_B_3156 polypeptideContig_7 711959..713924 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2548 ID=mRNA_2548|Name=jgi.p|Trimin1|158841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_7:711959..713924+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTATCAATTCCTTCTGACCCGCTTTCACCCGCCTGCTACCCTCC
ACCCCCCCCCCACCCCCCCTTGCGCGCGCGCAGCTATGAGGAGACCGTCG
CGTTCTCCGCCTACGTCAACCAGGCGGTGGGTGCCGCGCCGCAGCTCGCG
CACAGGCTGCCGATCGCGCCGGCGACGCTCGTGCGCGCGTGCGCCGACGG
CGTCGTCCTGTGCCACCTGGTCAACGAGGCGGCGGCGGGCAGCGTGCCGG
AGCGCCTCATCAACCGCCGCGAGCCGCTGTCCATCTTCCAGGCGACGGAG
AACTGCAACCACGCGATCGCCGCGGTGCGCGCGCTCGGCTGCCCGGTCGT
CAACATTGGCGCGCGCGACATCACGGAGGAGAAGACCATCCTCCTGCTGG
CGCTGCTGTGGCAGATCATCAAGGCGAAGATCTCGTCGCAGGTGTCGCTC
GCGGCGTGCCCGCGCCTGCGCCTGCTGCGCGAGCCGGGCGAGTCGGAGGC
GGCCTTCGCGGCGCTGCCCGTTGAGCAGCTGCTGCTGCGCTGGTTCAACC
ACCAGCTGCACTGGGCGGGCGCGGCGCGCAGGCTGCGCAACCTCGACAGG
GACCTGGCGGACGCGGAGTGCTACGCGGCGCTGCTGCGGCGGCTCGGGCG
CGGCGGCGGCGGCGCGCGCGTCCTTGCGCTCGAGCGCTGCCGCACGCCGC
GGCGCCTCGCGGAGCACGTGATCAACGCCGCCGCCACGGACCTCGGCGTC
GCCGCGGTGATCCACGCCGCGCACATCACGAGCGGCAACGCGCGCCTCAA
CATGGCGTTCATCGCGCAGCTGGTGAGTGCCGCCGCCGCCGCCGTGACTG
CGCGTTGGCAGTGCTGA
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protein sequence of jgi.p|Trimin1|158841

>Trimin1|158841|e_gw1.7.101.1 ID=Trimin1|158841|e_gw1.7.101.1|Name=jgi.p|Trimin1|158841|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MSLSIPSDPLSPACYPPPPPHPPLRARSYEETVAFSAYVNQAVGAAPQLA
HRLPIAPATLVRACADGVVLCHLVNEAAAGSVPERLINRREPLSIFQATE
NCNHAIAAVRALGCPVVNIGARDITEEKTILLLALLWQIIKAKISSQVSL
AACPRLRLLREPGESEAAFAALPVEQLLLRWFNHQLHWAGAARRLRNLDR
DLADAECYAALLRRLGRGGGGARVLALERCRTPRRLAEHVINAAATDLGV
AAVIHAAHITSGNARLNMAFIAQLVSAAAAAVTARWQC*
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mRNA from alignment at Contig_7:711959..713924+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2548 ID=mRNA_2548|Name=jgi.p|Trimin1|158841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1966bp|location=Sequence derived from alignment at Contig_7:711959..713924+ (Tribonema minus UTEX_B_3156 )
ATGTCTCTATCAATTCCTTCTGACCCGCTTTCACCCGCCTGCTACCCTCC
ACCCCCCCCCCACCCCCCCTTGCGCGCGCGCAGCTATGAGGAGACCGTCG
CGTTCTCCGCCTACGTCAACCAGGCGGTGGGTGCCGCGCCGCAGCTCGCG
CACAGGCTGCCGATCGCGCCGGCGACGCTCGTGCGCGCGTGCGCCGACGG
CGTCGTCCTGTGCCACCTGGTCAACGAGGCGGCGGCGGGCAGCGTGCCGG
AGCGCCTCATCAACCGCCGCGAGCCGCTGTCCATCTTCCAGGCGACGGAG
AACTGCAACCACGCGATCGCCGCGGTGCGCGCGCTCGGCTGCCCGGTCGT
CAACATTGGCGCGCGCGACATCACGGAGGAGAAGGTGCGCCGGAGCGCTG
CTGTGTGCGCGGCAGCTGTGTGCGTCGTGGCTGTGGATGCGCGTGCAGGG
GAAGGCGGTGGCTGGAAGGGGCTGGTCGCGGTGCGCGCTGCGTGTGTGTC
GCAGCTGCGGAGGCGCGTGCAGGGGAAGGGGGAGGCGGTGGCCGGGGAGG
GGCTGGTTGCGGGCGGAGGGGATGGTTCAGAACTGGTCGGGGGCAGCTGG
CGGCAGCGCATGTATGACGGTGGCAGTTGCGATGGTGGCGCGGCGCAGTC
TCGGGAGTGCCGCGTAACACGTGCGATGCGCTATCGCCGAATGCGGGCGG
GCATCTAGCAGTGCTGGCGGTTTGGCGCTTGTTCACAGCGTGCGCGTCAA
AAGACGTCTGCTGACGGTGTGCGCTACGCGCGACAGCGTGCCGACCCATC
TGAGTAGGTCTTTTGTCATCATCTTGCGTGTCGTGAAACATGTCTCCGAC
CCCTGCAGACCAACCTTCTGCAGCACACCGCTGCATCGCAGGCCACGCCT
CTGCTGTCGATCACGGTGCACCCGCGTCCTCTGCCGCCGCCCGCTGCCCT
TTGCGTGCAACGCACCCCTCCCCCCCTTGCTTTCCACAGCATCAGCAGCT
CGTGCGCGTGACCCCTTCGCGCTGCCGCCGCATAACACCCCCTTCCCCCG
CATATGCGCGCGCGCGCAGACCATCCTCCTGCTGGCGCTGCTGTGGCAGA
TCATCAAGGCGAAGATCTCGTCGCAGGTGTCGCTCGCGGCGTGCCCGCGC
CTGCGCCTGCTGCGCGAGCCGGGCGAGTCGGAGGCGGCCTTCGCGGCGCT
GCCCGTTGAGCAGCTGCTGCTGCGCTGGTTCAACCACCAGCTGCACTGGG
CGGGCGCGGCGCGCAGGCTGCGCAACCTCGACAGGTACGCGTCGCGGCTG
GCGTACCTACCTACCCGTACACTCTATCCACGCATACCGTCCGCGTGCCA
AAGCACGGCGCGACTTGCCCGCTTGCTTGCGAGCGCTCATCGCGCCGCCG
CGCAGCTGGGCCATATCGGGCCCAAACAGCGCACCGCCAACGCGATAGGC
CATGCTCACGTGCCGCGTGCGGCCGGCAGCCGCCGCGCACGCTCGCCCGC
CGACTTGTACGAGCGCTTTTATGCGAAACTGTCACAAGAAGTGCATCTTG
AGGTACACCCCGCAAAACACCCGCTGCGCCGCGCCGCTGCCCTGAACACT
ACCTCCAAAGTACACCCGAAGCGCACTCGAAGTGCACATTACAGCACGCT
CTGTCTCACCGGCACACACGCTTCGCCCCGACGCGTGTGCCACCGCAGGG
ACCTGGCGGACGCGGAGTGCTACGCGGCGCTGCTGCGGCGGCTCGGGCGC
GGCGGCGGCGGCGCGCGCGTCCTTGCGCTCGAGCGCTGCCGCACGCCGCG
GCGCCTCGCGGAGCACGTGATCAACGCCGCCGCCACGGACCTCGGCGTCG
CCGCGGTGATCCACGCCGCGCACATCACGAGCGGCAACGCGCGCCTCAAC
ATGGCGTTCATCGCGCAGCTGGTGAGTGCCGCCGCCGCCGCCGTGACTGC
GCGTTGGCAGTGCTGA
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Coding sequence (CDS) from alignment at Contig_7:711959..713924+

>mRNA_2548 ID=mRNA_2548|Name=jgi.p|Trimin1|158841|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_7:711959..713924+ (Tribonema minus UTEX_B_3156 )
ATGTCTCTATCAATTCCTTCTGACCCGCTTTCACCCGCCTGCTACCCTCC
ACCCCCCCCCCACCCCCCCTTGCGCGCGCGCAGCTATGAGGAGACCGTCG
CGTTCTCCGCCTACGTCAACCAGGCGGTGGGTGCCGCGCCGCAGCTCGCG
CACAGGCTGCCGATCGCGCCGGCGACGCTCGTGCGCGCGTGCGCCGACGG
CGTCGTCCTGTGCCACCTGGTCAACGAGGCGGCGGCGGGCAGCGTGCCGG
AGCGCCTCATCAACCGCCGCGAGCCGCTGTCCATCTTCCAGGCGACGGAG
AACTGCAACCACGCGATCGCCGCGGTGCGCGCGCTCGGCTGCCCGGTCGT
CAACATTGGCGCGCGCGACATCACGGAGGAGAAGACCATCCTCCTGCTGG
CGCTGCTGTGGCAGATCATCAAGGCGAAGATCTCGTCGCAGGTGTCGCTC
GCGGCGTGCCCGCGCCTGCGCCTGCTGCGCGAGCCGGGCGAGTCGGAGGC
GGCCTTCGCGGCGCTGCCCGTTGAGCAGCTGCTGCTGCGCTGGTTCAACC
ACCAGCTGCACTGGGCGGGCGCGGCGCGCAGGCTGCGCAACCTCGACAGG
GACCTGGCGGACGCGGAGTGCTACGCGGCGCTGCTGCGGCGGCTCGGGCG
CGGCGGCGGCGGCGCGCGCGTCCTTGCGCTCGAGCGCTGCCGCACGCCGC
GGCGCCTCGCGGAGCACGTGATCAACGCCGCCGCCACGGACCTCGGCGTC
GCCGCGGTGATCCACGCCGCGCACATCACGAGCGGCAACGCGCGCCTCAA
CATGGCGTTCATCGCGCAGCTGGTGAGTGCCGCCGCCGCCGCCGTGACTG
CGCGTTGGCAGTGCTGA
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