mRNA_2542 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A836CAN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN6_9STRA) HSP 1 Score: 632 bits (1630), Expect = 2.080e-229 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
Query: 1 MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRAQHHGASASA 909
MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRAQHHGASASA
Sbjct: 1 MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRAQHHGASASA 303
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA) HSP 1 Score: 365 bits (936), Expect = 1.660e-123 Identity = 181/302 (59.93%), Postives = 224/302 (74.17%), Query Frame = 1
Query: 4 TLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRAQHHGASASA 909
TL+AVPA G IFVK+LSG T TVHGLS SDTV ++ EA+E KEGV D+Q+L FAG++L+ TL + I + ST+HM+ L GG S + LKIPFADVS++ A+Q + F PDAP WRT GLN+EGYCRN C ARN+LVI+ +GM+AFTLG++CACP+C + + P TCGFYACTW YEGAKTDG+ M SPW+TA D Y VNEHGNMA WSRLVLVAKPIAS A+DKD A+P++C +CLM LA +E+T R CGHRY+ATCL RWQ+ G +TC ACR + HG A+A
Sbjct: 24 TLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVP--VDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRS-MPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSIG----ATCTACRTELHGVGAAA 318
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA) HSP 1 Score: 278 bits (711), Expect = 2.700e-88 Identity = 147/312 (47.12%), Postives = 188/312 (60.26%), Query Frame = 1
Query: 1 MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPI-------------ASGAKDKDGRAVPNDCGLCLMSLAESENTAVRN---CGHRYHATCLTRWQQQYSGGSHRST--CPACRA 882
MTLQAVPA + +FVK+L+G F + + DT+D + E ++D EG+L D+QR++FAG+QLE GR++ ++ IQ + TLH++ RLRGG P + FADV+ A++ S DAP WRTV G+N+EGYCRN RC AR LVIA VGM AF LG+ C CP C SAI P TCGFYAC W Y+GAK G + W TAGD YD E NM WSRLVLVAKP +SGA GR P++C +CL + ++ CG+RYHA CL W++ SH S CP CRA
Sbjct: 95 MTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILP--DQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCG--PSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWREC----SHASCSKCPTCRA 398
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA) HSP 1 Score: 268 bits (686), Expect = 5.770e-84 Identity = 147/312 (47.12%), Postives = 186/312 (59.62%), Query Frame = 1
Query: 1 MTLQA--VPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKP-----------IASGAKDKD--GRAVPNDCGLCLMSLA-ESENTAVRNCGHRYHATCLTRWQQQYSGGSHRST--CPACRA 882
MTLQA P + I+VK+L G++ + G+ DTVD + + + D EG+ D+QRL+FAG+QLE RT+ ++ ++ DSTLH++ RLRGG P + FADVS AI+ FS DAP WRTV GLN+EGYCR+ RC AR LVIA +GM AF LG+RC CP C SAI P TCGF AC W Y+GAK DG + W TAGD Y+ E NMA WSRLVLVAKP +A +K+ G + P++C + L S CGHRYHA CL W++ SH S CP CRA
Sbjct: 140 MTLQAPAAPGPQGSRAIYVKTLRGQSLPLSGVLPCDTVDILKDRISDCEGIPA--DQQRLIFAGKQLEDSRTVDDYSMERDSTLHLVLRLRGGGCG--PSSLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGELVRGAWRTAGDDKYERFRESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGAVTTTRCGHRYHALCLAGWREC----SHASCSKCPTCRA 443
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: S4W648_9VIRU (Ubiquitin n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4W648_9VIRU) HSP 1 Score: 187 bits (475), Expect = 4.250e-51 Identity = 103/299 (34.45%), Postives = 154/299 (51.51%), Query Frame = 1
Query: 7 LQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTL---GARCACPQCSSAILPHTCGFYACTWKYEGAKT-DGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIA----SGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACR 879
L VP +FV++L+GK T+ +++++ I + DKEG+ D+QRL++AGQQ+E GR L ++ I+ ++++H++ RLRGG P F D+ T A+Q ++S AP WR V GL +EG C+N CAA +VI N G D F L CACP+C + P TC F C WK+ G K D W A D + + W+RL++ A+ I SG + G+ C +C+ S+ S V +CGH +H+ C+ W + TCP CR
Sbjct: 332 LSIVPKPSRSFQLFVQTLTGKVITIEAAP-ANSIEEIKCIIHDKEGLPP--DQQRLLYAGQQMEDGRRLADYAIRAEASMHLVLRLRGGGGG-PPASATFVDMENTGAMQCRQWSKSAPDWRIVKPGLCIEGRCKNVGCAAYGRMVIVNKGFDTFDLLLDADTCACPECDKHVKPKTCAFNNCWWKWNGIKEGDSRKYAGKWTLADDNYHCFAEDEAGSVEWTRLLIRARSIPKVAKSGGNEPIGKPFDMFCCICISSINSSGVHKVLDCGHAFHSPCIDAWVAR------SPTCPHCR 620
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A485LQL2_9STRA (Aste57867_24224 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQL2_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.350e-48 Identity = 105/293 (35.84%), Postives = 153/293 (52.22%), Query Frame = 1
Query: 43 IFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGS---SSLAPL-KIP-----FADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCA-CPQCSSAILPHTCGFYACTWKYEGAK--TDGVFMCSPWYTA-GDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRA 882
+FVK++SG+T ++H ++ ++ + +EDKEG QRLV+ G +L R + ++ I ++TLH + RL GGS S P K+P FADVS + + I FS DAP WRTV GLN+EG C N C A +LV +G +F + A A CP C A++P +CGFY C W+YEG K TD + + S W A GD + ++ W+ LV+ A+ + P++C +C L S + A C H H CL W ++TCP CR+
Sbjct: 110 VFVKTISGRTISLH-VAPHRSIRHVKVQIEDKEGTPVAM--QRLVYRGVELTDSRFVEDYNIPANATLHGLARLAGGSLISSQPKPAPKLPTNGVAFADVSNAAMLDVIHFSSDAPKWRTVNFGLNVEGRCDNSGCVAYFQLVYTPLGFRSFNVVASVASCPMCHEAVVPKSCGFYKCRWRYEGVKVHTD-LHLSSGWALAEGDVYHAFKAVDSDLVRWASLVVTAQQLQP----------PSECAVCFEPLGRSPSLAKLGCKHSIHQACLNEWTAMCRSNHKQATCPLCRS 388
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A3M6V6M3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M3_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.790e-48 Identity = 101/292 (34.59%), Postives = 146/292 (50.00%), Query Frame = 1
Query: 37 INIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTL--GARCACPQCSSAILPHTCGFYACTWKYEGAK-TDGVFMCSPWYTAGDTAYDLVN--EHGNMALWSRLVLVAKPIASGAKDKDGRAVP------NDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACR 879
+ +FV +LSGKT T++ LS +DTV+ + +EDKE + + QRLV+AG+ L L + I+ +TLH+ R+RGGS +P+ F DVS S I +FSPDAP WR V GLN+EG CRN C A ++I F L CP C + P TCGFY C W++EG ++ + +CS W A Y + E W+ L+++ KP + VP + C +C L+ +CGH +H C W + + +CP CR
Sbjct: 76 MTVFVITLSGKTITINCLS-TDTVNYVKMKIEDKESIAP--EVQRLVYAGKLLNDQVMLSSYNIKGGNTLHLSLRIRGGSIGHSPVFRTFVDVSNNSLITARKFSPDAPEWRLVSKGLNIEGRCRNRECRAYRSMIIDRKEFVPFNLMRDDDIECPICHCEVRPITCGFYGCAWRFEGVTGSENLSICSQWNDASGDMYHRFDPDEVNGSVEWASLLILTKPRQEMIAAQLCLTVPTTFKSSDTCTICWSPLSSPTKCFTPHCGHTFHRECSKEWAKWCKHRKTQPSCPICR 364
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.540e-48 Identity = 106/290 (36.55%), Postives = 150/290 (51.72%), Query Frame = 1
Query: 43 IFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTL--GARCACPQCSSAILPHTCGFYACTWKYEGAKT-DGVFMCSPWYTAGDTAYDL--VNEHGNMALWSRLVLVAKPI-----ASGAKDKDGRAVPND--CGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPAC 876
I++K+L+GKT V+ ++T++ I ++++EG+ D+QR++FAG+QLE GR L ++ IQ STLH++ RLRGG + P FADVS S FS AP WR GLN+EG C N C A +ELVI G + F L CP+C S + P TCGFY C WK+EG K G F SPW Y +E W L+++ KP+ A + + +D C +C + S + A CGH +H C+ W + G + CP C
Sbjct: 104 IYIKTLTGKTTHVN-CHAANTIEEIKYDIQEQEGIPP--DQQRIIFAGKQLEDGRKLSDYNIQYGSTLHLVLRLRGGY--VEPRC--FADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDGDVTCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDADETSGSIEWESLLILVKPLKEAVAAELVESAQEARLHSDLVCAVCWTEIL-SGSGAGSECGHLFHCGCIENWSKWSEGQKTLTKCPVC 385
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A6G0XMG5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMG5_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.020e-46 Identity = 100/295 (33.90%), Postives = 156/295 (52.88%), Query Frame = 1
Query: 37 INIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGS-------SSLAPLK-IPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGM---DAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDG-VFMCSPWYTA-GDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRA 882
+ +FVK++ G+T + ++ ++T+ + + E+KEG L + D RLV+ G +L ++ + I ++TL +GRL GGS ++ P K + FADVS ++ I FSP AP+WR V GLNL G C NP C A ++ V VG + FT A C P C +++P TCGFY+C W++EG K + V M S W A G+ + ++ GN+ LW L++++ P+A +C +C L + A C H+ H CL W G + +CP CR+
Sbjct: 97 LKLFVKTIRGRTIRLD-VNPNETIQDVKQRFEEKEG-LPVAD-NRLVYGGVELADHCRVFHYNIPPNATLMSLGRLVGGSHIRMGSLTTALPCKGLKFADVSNEDMMEVIEFSPSAPAWRIVCRGLNLSGQCTNPDCVAGSKWVYMQVGFRPANLFTYQAHC--PMCRQSVVPKTCGFYSCQWRFEGIKLNSDVHMSSGWKKAEGEVYHAFKSQEGNLVLWESLLVISHPLAV-----------KECAVCCEVLGIN-GLATLPCQHQIHRVCLNEWTTTCKGRNASVSCPLCRS 374
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Match: A0A6G0XMB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMB9_9STRA) HSP 1 Score: 165 bits (418), Expect = 8.850e-45 Identity = 100/285 (35.09%), Postives = 138/285 (48.42%), Query Frame = 1
Query: 37 INIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCA-CPQCSSAILPHTCGFYACTWKYEGAKTDG-VFMCSPWYTAGDTAYDLVN-EHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRA 882
++I + +L+G TF V S +TV + E +E +G +QRLVFAG +LE TL +++I D+T+H+M RLRGG + A L FADV ++ F+ WR V GLN+ G C N C A+ + V+A V F L A CP C I P TCGFY C W++EG K + + SPW A Y N + W LV++ P+ V +DC C+ LA+ CGH H +C+ W TCP CRA
Sbjct: 108 LDIHITTLTGNTFPVVS-SPLETVHLLKETIESLQGFP--VQQQRLVFAGTELEDDWTLGDYQIPQDATVHLMLRLRGGVEA-ARL---FADVEDEQLLEQHEFASTGSPWRAVDVGLNIHGICTNDACEAKGQHVVAPVKWTPFNLQRHTAKCPMCRLTIEPKTCGFYKCRWRFEGLKLEAHEHVSSPWAIADGEVYHSFNADESKQVAWESLVIIPMPLR----------VDSDCVFCMDKLADQTKVYGPPCGHLAHRSCVMLWGSYCKANHADVTCPTCRA 375 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158959 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2542 ID=mRNA_2542|Name=jgi.p|Trimin1|158959|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_7:654030..654941- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACGCTGCAGGCAGTGCCAGCGGACGAGCACGGGATAAACATCTTCGTback to top protein sequence of jgi.p|Trimin1|158959 >Trimin1|158959|e_gw1.7.92.1 ID=Trimin1|158959|e_gw1.7.92.1|Name=jgi.p|Trimin1|158959|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=304bp MTLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLback to top mRNA from alignment at Contig_7:654030..654941- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2542 ID=mRNA_2542|Name=jgi.p|Trimin1|158959|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_7:654030..654941- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_7:654030..654941- >mRNA_2542 ID=mRNA_2542|Name=jgi.p|Trimin1|158959|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=912bp|location=Sequence derived from alignment at Contig_7:654030..654941- (Tribonema minus UTEX_B_3156 )back to top |