mRNA_2537 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A835YMC8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC8_9STRA) HSP 1 Score: 457 bits (1175), Expect = 6.030e-163 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
Query: 1 MDRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADAL 651
MDRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADAL
Sbjct: 1 MDRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADAL 217
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A8B8KXE1_ABRPR (uncharacterized protein LOC113858613 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KXE1_ABRPR) HSP 1 Score: 146 bits (369), Expect = 1.850e-40 Identity = 86/216 (39.81%), Postives = 123/216 (56.94%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQL-RVIQT--SGTNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADA 648
PK + H+TGF KF GVP+NPT ++ +L Y+ ++ G L S VLDV+ EGA QL + +++ S T+ + ++H GV++G + F +E A NEATFR PDE G P I+ E+G +S T +T+LP I ++L +D + S D GRFVCNYVYY SL F +K +LF+H P + + E Q+ F L IA A
Sbjct: 6 PKAITIHVTGFKKFQGVPENPTETIVNNLKSYVEKRGLPAGVTL--GSCIVLDVAGEGAIPQLYQTLESAFSNTDTVSNANVAWLHLGVNSGALRFAIERQAVNEATFRCPDELGWQPQQVPIVLEDGGISRTRKTSLPVGAILKSLKKGAYDMMI--SDDAGRFVCNYVYYHSLRFAEQKGNK-SLFVHFPLFSRIDEETQMRFTASLLEAIASA 216
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: D3B2C0_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B2C0_POLPP) HSP 1 Score: 146 bits (368), Expect = 2.330e-40 Identity = 87/218 (39.91%), Postives = 127/218 (58.26%), Query Frame = 1
Query: 1 MDRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLL--RVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGITVYV-HCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADK-RALFIHCPPHTSVGPEDQLCFIKDCLIVIA 642
M++ +V F LTGFGKFNGV DNPT LMK++ Y++++R ++ +L+ + S +++VSA + R + T + +Y+ H GV+A LE C +N+A+FRVPDE G PN I N + T+LP + E L + V STDPGRFVCNY+YY SL ++DK ++LF+H PP T V E+QL F+ D L +I+
Sbjct: 1 MEQSNKVKFILTGFGKFNGVSDNPTTHLMKNITEYVNKERQQVDRLIDFEILSNDIVEVSAVSSK---RTVDTIESLYSDHQHPIYIIHFGVNASAKCINLERCGWNDASFRVPDECGYCPNNEKIDLLNPECVNI-PTSLPIDHLIEKLCTS---HSVEPSTDPGRFVCNYIYYNSLMLSKKSSDKFKSLFVHVPPFTVVSMENQLKFVVDLLSLIS 211
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A803L0L8_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803L0L8_CHEQI) HSP 1 Score: 145 bits (366), Expect = 4.790e-40 Identity = 86/211 (40.76%), Postives = 119/211 (56.40%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIA 642
PK + FH+TGF KF GV +NPT ++ +L Y+S +N L +++AS T+L+ + EGA L + G + + V+VH GV++G F LE A+NEATFR PDE G P I+ E+G +S+T QT I L G++ V S D G FVCNYVYY SL F A ++LF+H P + + E Q+ FI L IA
Sbjct: 6 PKNITFHVTGFKKFQGVTENPTETIVSNLNEYVS--KNGLPTGVQLASCTILETAGEGARPALYELFEKGASNPDNESVVWVHLGVNSGAQKFALECQAFNEATFRCPDELGWQPQQVPIVPEDGEISNTRQTTCSADSILSFLKKKGFN--VMNSDDAGCFVCNYVYYHSLRFAE-ARGHKSLFVHVPLFSKIDKETQMRFITSLLGAIA 211
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A0A0LVQ6_CUCSA (Uncharacterized protein n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LVQ6_CUCSA) HSP 1 Score: 144 bits (363), Expect = 1.600e-39 Identity = 83/218 (38.07%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQL-RVIQTSGTNAGVDGIT----VYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADA 648
P V H+TGF KF+GV DNPT ++ +L Y+ ++N L + L + S ++L+ + +GA D L + +Q++ G + +++H GV++G F +E A+NEATFR PDE G P I+ E+G +S +T+LP I +TL+ G++ V S D GRFVCNYVYY SL K +LF+H P ++ E Q+ FI L V+A +
Sbjct: 6 PPSVTIHVTGFKKFHGVSDNPTETIVNNLKKYM--EKNGLPEGLTIGSCSILETAGQGALDLLHKTLQSAVEGKGSEPTNSRRIIWLHLGVNSGASRFAIERQAFNEATFRCPDEMGWKPQKVPIVLEDGEVSRARETSLPVEEITKTLAKKGYE--VMTSDDAGRFVCNYVYYHSLRQAEENGIK-SLFVHVPLFLTIDEETQMQFIASLLEVLASS 218
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A8B8QD38_9MYRT (uncharacterized protein LOC115751316 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QD38_9MYRT) HSP 1 Score: 143 bits (361), Expect = 2.940e-39 Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAG---VDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADA 648
PK + +++GF KF GVP+NPT ++ +L ++ ++R G L + TVL+ + +GA L + SG ++ D V++H GV++G + F +E+ + NEATFR PDE G P I+ E+G S T QT+L T I + L G+D V S D GRFVCNYVYY SL K +LF+H PP + + E Q+ F+ L IA +
Sbjct: 6 PKPITINVSGFKKFQGVPENPTETIVNNLTSFVEKKRLPPGVTL--GTCTVLETAGDGALPMLFEVMESGISSNGSTSDEQVVWLHLGVNSGALKFAIEQQSVNEATFRCPDELGWQPQQLPIVPEDGQTSRTRQTSLSTEAILKFLRKKGYD--VTLSKDAGRFVCNYVYYHSLRLAEQRGSK-SLFVHVPPFSRIDEETQMNFVASLLEAIASS 216
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A804JIX6_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804JIX6_MUSAM) HSP 1 Score: 142 bits (358), Expect = 8.060e-39 Identity = 88/215 (40.93%), Postives = 121/215 (56.28%), Query Frame = 1
Query: 4 DRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQL-RVIQTSGTNAGVD-GITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIA 642
+RP EV H+TGFG+F GVP+NPT ++ L ++ Q L Q LR+ S +VL+ + EGA L RV++++ D G ++VH GVD F +E+ A NEATF PDE G P I+A +G +S QT LP I + L+ G+ R S D G FVCNYVYY SL F +LF+H PP ++ E Q+ F+ L V+A
Sbjct: 4 ERPSEVAVHITGFGRFLGVPENPTEGIVAGLEHFM--QEKGLPQGLRLGSCSVLETAGEGALAPLYRVLESAVPQTSTDSGRVIWVHFGVDGSSSCFAVEKQAVNEATFPCPDELGWKPMRVPIIASDGGISQVRQTTLPVDDIVKALAKTGY--LARTSLDAGSFVCNYVYYHSLWFAEQHGFD-SLFVHVPPFETIHKEIQMKFVACLLDVLA 213
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: A0A059B1N4_EUCGR (Uncharacterized protein n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059B1N4_EUCGR) HSP 1 Score: 142 bits (357), Expect = 1.170e-38 Identity = 85/218 (38.99%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGTNAGVDGIT-----VYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADA 648
PK V ++TGF KF GVP+NPT ++ +L ++ ++ G + + TVL+ + +GA L + SG ++ DG T V++H GV++G F +E A NEATFR PDE G P I+ E+G +S T QT+ T I E L G+D V S + GRFVCNYVYY SL R+LF+H PP + + E Q+ F+ L IA +
Sbjct: 6 PKPVTINVTGFKKFQGVPENPTETIVNNLKSFVEKKGLPPG--VTFGTCTVLEAAGDGALPMLFKVMESGISS--DGSTCDAQVVWLHLGVNSGAHKFAIERQAVNEATFRCPDELGWRPQQLPIVPEDGKISRTRQTSFSTKAILEFLKKKGYD--VTLSNNAGRFVCNYVYYHSLRLAEQRGS-RSLFVHVPPFSRIDEETQMNFVASLLEAIASS 216
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: X6PF70_RETFI (Pyroglutamyl-peptidase I n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PF70_RETFI) HSP 1 Score: 141 bits (356), Expect = 4.050e-38 Identity = 84/227 (37.00%), Postives = 120/227 (52.86%), Query Frame = 1
Query: 19 VVFHLTGFGKFNGVPDNPTWRLMKSLP--VYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSGT--------NAGVDG-----ITVYVHCGVDAGGMHF-KLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADAL 651
++F++TGFGKF GV DNPT LM +LP + + ++ + + + SY+VL VS E + +L I+T N D I VY+H GV G H+ K+E YN A FR+PDE G P I++ NG H LP + + +S G+ V S DPGR+VCN++YY SL C ++ ALF+H PP + E Q F +D ++ I D L
Sbjct: 20 IIFNVTGFGKFGGVEDNPTSHLMTNLPKIIEVDVKKETFPKNVTMESYSVLHVSGENSLKKLVDIRTKSAETIKSNTKNEKEDKQEKEIIKVYLHFGV--GNRHYIKIEGIGYNCANFRIPDELGWEPKDQPIVSSNGDTKHENHCRLPVDILTKRMSQKGYK--VESSVDPGRYVCNWIYYNSLELCKNNNNEYALFVHVPPFEDINEETQTKFARDLILEIYDIL 242
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Match: I1N1I2_SOYBN (Uncharacterized protein n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1N1I2_SOYBN) HSP 1 Score: 140 bits (352), Expect = 6.590e-38 Identity = 84/216 (38.89%), Postives = 121/216 (56.02%), Query Frame = 1
Query: 10 PKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVASYTVLDVSAEGAADQLRVIQTSG---TNAGVDGITVYVHCGVDAGGMHFKLEECAYNEATFRVPDERGATPNGALIMAENGTLSHTYQTNLPTAWIHETLSAAGWDRHVRRSTDPGRFVCNYVYYKSLAFCSGAADKRALFIHCPPHTSVGPEDQLCFIKDCLIVIADA 648
P+ + H+TGF KF GVP+NPT ++ +L Y+ +R L + + S TVLDV+ +GA QL S T++ + V++H GV++G + F +E A NEATFR PDE G P I+ E+G +S T +T++ I ++L +D V S + GRFVCNYVYY SL F +K +LF+H P + E Q+ F L IA A
Sbjct: 6 PRAITIHVTGFKKFQGVPENPTEAIVNNLKEYV--ERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGAVRFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRKTSMHVDAILKSLKKGAYD--VMISGNAGRFVCNYVYYHSLRFAEQKGNK-SLFVHVPLFARIDQETQMRFTASLLDAIASA 216 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158920 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2537 ID=mRNA_2537|Name=jgi.p|Trimin1|158920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=651bp|location=Sequence derived from alignment at Contig_7:609282..609932- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACAGACCGAAGGAGGTTGTGTTCCATCTGACGGGCTTTGGCAAGTTback to top protein sequence of jgi.p|Trimin1|158920 >Trimin1|158920|e_gw1.7.121.1 ID=Trimin1|158920|e_gw1.7.121.1|Name=jgi.p|Trimin1|158920|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp MDRPKEVVFHLTGFGKFNGVPDNPTWRLMKSLPVYLSQQRNELGQLLRVAback to top mRNA from alignment at Contig_7:609282..609932- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2537 ID=mRNA_2537|Name=jgi.p|Trimin1|158920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=651bp|location=Sequence derived from alignment at Contig_7:609282..609932- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_7:609282..609932- >mRNA_2537 ID=mRNA_2537|Name=jgi.p|Trimin1|158920|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_7:609282..609932- (Tribonema minus UTEX_B_3156 )back to top |