mRNA_242 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154757
Unique NamemRNA_242
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.500e-69
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.520e-48
Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            QR+CVMTVVAPEGTNQKSE++ IRV+GCKE++AEANRWA+ +RDS   +DVYV+KTN WAPLPPR+ EID V FTD RVQAV DS+ EHQ+GQKR+M+ERL
Sbjct:   16 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 116          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.010e-45
Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            QR+CVMTVVAP GTNQK+++++IRV+GC+E+LAEANRWAKS+R+  + +DVY +KTN WAPLPPRI EID V FTD RVQAV DS+ EHQ+G+K++MM+RL
Sbjct:   16 QRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRL 116          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CEP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.200e-41
Identity = 64/101 (63.37%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            QR+CVMT+VAP GTNQK+E + IRV+GC+ET+AEANRWAK+IRD    +DV+ +KTN+WA LPP ++EID V  TD RVQA+ DS+ EH++G KR+M+ERL
Sbjct:   30 QRYCVMTIVAPHGTNQKAEQLTIRVHGCRETMAEANRWAKAIRDDNTFFDVFCLKTNAWAALPPNVNEIDNVNMTDGRVQAILDSHREHEKGTKREMVERL 130          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.040e-37
Identity = 55/101 (54.46%), Postives = 84/101 (83.17%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            Q++ V+++VAPEGT QKS+DM+IR+YGC+ T+ +AN +A+ +RDS + +DVY ++T+ WAPLPPRI  I++VQ TD R+Q++ DSY+EH +GQK +++ERL
Sbjct:   12 QKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERL 112          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.710e-36
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQK 282
            QRFCV+TVVAP GT Q+ +DM+IR++GCKET  EA+ WA+S+RDS D +DVYV  TN W PLPP +S ++EV FTD RVQ +HD++    +G+K
Sbjct:   29 QRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEK 122          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.940e-28
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            Q F V++V+AP GTNQ + D++IRVYGC +TL  AN +A+S+RD+ D++DV V+    W PLPP   EID V +TD RV  + ++Y+ H +G+K  M+ERL
Sbjct:   29 QNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERL 129          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A2E6C2V9_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C2V9_9EURY)

HSP 1 Score: 63.2 bits (152), Expect = 4.280e-10
Identity = 31/106 (29.25%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRG-------QKRDMME 297
            Q F  +++V PEG NQK +   +++ GC  T  EA  WAK ++     +DV+V+    W  +PP  ++ ++  + + +++ +   Y  +QR        +KRDM+E
Sbjct:   13 QLFACVSIVGPEGCNQKCDKFGLKIRGCFATQEEAANWAKKLQADDATFDVWVMSMGQWVLIPPDPAQCEDTHYANEKLEELMSGYRANQREAAKMFEERKRDMIE 118          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: Q91DI1_HAV01 (UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q91DI1_HAV01)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-8
Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMME 297
            Q F ++++VAPEG NQKS  + I++ G  +T+  A + A  +      +DV+VV    W  +PP + +I E ++ D  +  +     E ++ QK+  +E
Sbjct:   69 QNFALISIVAPEGLNQKSNKVCIKIKGVFDTVENARQHANDLTKHDPTFDVFVVSLYEWLLVPPDMDKISEQEYVDEELNTI---ITEFKKSQKQVQLE 164          
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.800e-8
Identity = 23/38 (60.53%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  190 PRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303
            P +++ID VQFTD+R+Q++ DSY++H +GQKRDM+ERL
Sbjct:   54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERL 91          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A836CF96_9STRA5.500e-69100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZEC6_9STRA1.520e-4873.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY9_9STRA1.010e-4568.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEP3_9STRA1.200e-4163.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4I9_9STRA5.040e-3754.46Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CNB8_9STRA4.710e-3658.51Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6B0_9STRA1.940e-2849.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2E6C2V9_9EURY4.280e-1029.25Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
Q91DI1_HAV012.140e-830.30UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID... [more]
A0A835YPU8_9STRA2.800e-860.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:813537..813839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154757|gw1.3.520.1
Max annot lvl10239|Viruses
EggNOG OGs4QE6F@10239|Viruses,4QXY1@35237|dsDNA viruses no RNA stage
Evalue3.51e-09
Seed ortholog97195.Q91DI1_HAV01
Hectar predicted targeting categoryother localisation
TranscriptId155079
TrackFilteredModels1
ProteinId154757
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154757gene_242Tribonema minus UTEX_B_3156 geneContig_3 813537..813839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_242_1exon_242_1Tribonema minus UTEX_B_3156 exonContig_3 813537..813839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_242CDS_242Tribonema minus UTEX_B_3156 CDSContig_3 813537..813839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154757Trimin1|154757|gw1.3.520.1Tribonema minus UTEX_B_3156 polypeptideContig_3 813537..813839 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGCTTCTGCGTAATGACCGTCGTCGCGCCCGAGGGCACGAACCAGAA
GAGCGAGGACATGGTGATCAGGGTGTACGGCTGCAAGGAGACCCTGGCGG
AGGCCAACCGTTGGGCGAAGTCCATCCGCGACAGCTGCGACATGTGGGAC
GTGTACGTGGTCAAGACCAACAGCTGGGCGCCGCTGCCTCCGAGGATCAG
CGAGATCGACGAGGTGCAGTTCACGGACGCTCGGGTGCAGGCCGTGCACG
ACAGCTACGTGGAGCACCAGCGCGGCCAGAAGAGGGATATGATGGAGAGG
CTG
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protein sequence of jgi.p|Trimin1|154757

>Trimin1|154757|gw1.3.520.1 ID=Trimin1|154757|gw1.3.520.1|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWD
VYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMER
L
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mRNA from alignment at Contig_3:813537..813839+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )
CAGCGCTTCTGCGTAATGACCGTCGTCGCGCCCGAGGGCACGAACCAGAA GAGCGAGGACATGGTGATCAGGGTGTACGGCTGCAAGGAGACCCTGGCGG AGGCCAACCGTTGGGCGAAGTCCATCCGCGACAGCTGCGACATGTGGGAC GTGTACGTGGTCAAGACCAACAGCTGGGCGCCGCTGCCTCCGAGGATCAG CGAGATCGACGAGGTGCAGTTCACGGACGCTCGGGTGCAGGCCGTGCACG ACAGCTACGTGGAGCACCAGCGCGGCCAGAAGAGGGATATGATGGAGAGG CTG
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Coding sequence (CDS) from alignment at Contig_3:813537..813839+

>mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )
CAGCGCTTCTGCGTAATGACCGTCGTCGCGCCCGAGGGCACGAACCAGAA
GAGCGAGGACATGGTGATCAGGGTGTACGGCTGCAAGGAGACCCTGGCGG
AGGCCAACCGTTGGGCGAAGTCCATCCGCGACAGCTGCGACATGTGGGAC
GTGTACGTGGTCAAGACCAACAGCTGGGCGCCGCTGCCTCCGAGGATCAG
CGAGATCGACGAGGTGCAGTTCACGGACGCTCGGGTGCAGGCCGTGCACG
ACAGCTACGTGGAGCACCAGCGCGGCCAGAAGAGGGATATGATGGAGAGG
CTG
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