mRNA_2420 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158268
Unique NamemRNA_2420
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835YTM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.530e-49
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 
Query:    1 MDVDEELLTNKRACEPDIDDREPEEPRGDKQFECTQEGCDKTFRRKNTMMKHIEAVHSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPDNPTSSALELTTMFSALPT 1002
            MDVDEELLTNKRACEPDIDDREPEEPRGDKQFECTQEGCDKTFRRKNTMMKHIEAVHSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPDNPTSSALELTTMFSALPT
Sbjct:    1 MDVDEELLTNKRACEPDIDDREPEEPRGDKQFECTQEGCDKTFRRKNTMMKHIEAVHSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPDNPTSSALELTTMFSALPT 334
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BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.890e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:  808 YQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            Y  WHT+EGQQKK RKQDRVRQVLESAY VDSECHVRY+GGCVPDPD
Sbjct:  222 YDCWHTVEGQQKKIRKQDRVRQVLESAYTVDSECHVRYQGGCVPDPD 268
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835YKM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.850e-16
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:  808 YQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            YQRWHT EG + K RKQDR+R+VLE  YAVDSECH+RYKGGCVPDPD
Sbjct:    5 YQRWHTKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKGGCVPDPD 51
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A836CBY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.580e-15
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:  808 YQRWHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            YQRWHT EG Q+K RKQDRVR+VLES YAVDSECH+RY GGCVPDPD
Sbjct:    5 YQRWHTKEGMQRKVRKQDRVRRVLESVYAVDSECHIRYIGGCVPDPD 51
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A836CH89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH89_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.410e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  817 WHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            WHT EGQQKK RKQDRVRQ++E  YAVDSECHVRY+GGCVPDPD
Sbjct:  336 WHTKEGQQKKIRKQDRVRQIMEKIYAVDSECHVRYQGGCVPDPD 379
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835ZGJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.440e-11
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  817 WHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            WHT EG  KK RKQDR+RQVLE+ YAV++ECHVRY GGCVPDPD
Sbjct:  262 WHTKEGMAKKIRKQDRLRQVLEAVYAVNTECHVRYIGGCVPDPD 305
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835YYJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  817 WHTIEGQQKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            WHT EG+ KK  KQDRVRQ+LE  YAVDSECH++Y+ GCVPDPD
Sbjct:  213 WHTKEGKAKKITKQDRVRQILEEVYAVDSECHIKYRNGCVPDPD 256
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835YUI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-10
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:  838 QKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            QKK RKQDRVRQ+LE+ YAVDSECH+RY+GGCVPDPD
Sbjct:    2 QKKIRKQDRVRQLLEAVYAVDSECHIRYEGGCVPDPD 38
[Close]
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Match: A0A835Z3P9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.830e-8
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  838 QKKSRKQDRVRQVLESAYAVDSECHVRYKGGCVPDPD 948
            Q+K RKQDRVR+VLE+ YAVD+ECH+RY  GCVPDPD
Sbjct:    2 QRKIRKQDRVRRVLEAVYAVDNECHIRYADGCVPDPD 38
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158268 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YTM5_9STRA7.530e-49100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3M2_9STRA1.890e-1687.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKM9_9STRA8.850e-1678.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBY6_9STRA8.580e-1582.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CH89_9STRA3.410e-1484.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGJ8_9STRA1.440e-1177.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYJ7_9STRA1.560e-1172.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUI0_9STRA1.240e-1083.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3P9_9STRA1.830e-875.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1415144..1416148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158268|e_gw1.5.107.1
Hectar predicted targeting categoryother localisation
TranscriptId158590
TrackFilteredModels1
ProteinId158268
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158268gene_2420Tribonema minus UTEX_B_3156 geneContig_5 1415144..1416148 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2420_1exon_2420_1Tribonema minus UTEX_B_3156 exonContig_5 1415144..1416148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2420CDS_2420Tribonema minus UTEX_B_3156 CDSContig_5 1415144..1416148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158268Trimin1|158268|e_gw1.5.107.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1415144..1416148 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Trimin1|158268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_5:1415144..1416148+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGACGAGGAACTGCTGACTAACAAGCGGGCTTGCGAGCCAGA
CATCGATGACAGGGAGCCCGAGGAGCCTAGGGGCGACAAACAGTTCGAGT
GCACACAGGAGGGTTGTGACAAGACATTCAGGCGCAAGAACACCATGATG
AAGCATATAGAGGCGGTCCACAGCGGCATCAAACAATTTGCATGTTCTGA
TCCCAACTATGACAAGACGTTTTCACAAAAAGCAAACATGCTCAAGCACG
CCGAAGCAGTCCACGGTGGCATCAAGAAGTTCGAATGTACTGACCCCGAC
TGTGACAAGACATTTTCTGGAAAAGCAAACATGCTCCAGCACGCCGAAGC
AGTCCACGGTGGCATCAAGAAGTTCGAATGTACCGACCCAGACTGTGACA
AGACATTTTCACAAAAGCCGAACATGCTCAAGCACATTGAAACGGTGCAC
GGCGGCATCAAGAAGTTCAAATGTACCGACCCTGACTGCGACAAGACATT
TTCCCAAAAAGCCAACATGCTCCGCCACATAGAGGCTGTCCACGGTGGGA
TAAAGGAATTTGAATGCAGTAATCCCTACTGTAAGCAGAGGTTCTACCAA
AAAGTCCACATGCAACAGCACCTTTCGGCGGTCCATTATGGTATTAAGGG
TGTAGAATGCACCGAACCTGGGTGTGAGCAAAAGTTCAGTACAAAACAGG
GCATGCAACAGCACCTCAAGGCGGTACACGTAGGCCTCAAGGATATAGAG
TGCACCGATCCTGAGTGCGATCACATGTTTTCAATAAGGGCCAGCATGCA
AAGGCACTACCAACGGTGGCACACCATAGAAGGGCAGCAGAAGAAGAGCC
GGAAGCAGGACCGAGTTCGCCAGGTGTTGGAGTCGGCTTACGCTGTGGAC
TCTGAGTGCCACGTGCGGTACAAAGGTGGCTGTGTACCTGACCCCGACAA
CCCGACAAGTTCTGCGCTCGAGTTGACTACCATGTTCTCGGCATTACCAA
CGTGA
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protein sequence of jgi.p|Trimin1|158268

>Trimin1|158268|e_gw1.5.107.1 ID=Trimin1|158268|e_gw1.5.107.1|Name=jgi.p|Trimin1|158268|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MDVDEELLTNKRACEPDIDDREPEEPRGDKQFECTQEGCDKTFRRKNTMM
KHIEAVHSGIKQFACSDPNYDKTFSQKANMLKHAEAVHGGIKKFECTDPD
CDKTFSGKANMLQHAEAVHGGIKKFECTDPDCDKTFSQKPNMLKHIETVH
GGIKKFKCTDPDCDKTFSQKANMLRHIEAVHGGIKEFECSNPYCKQRFYQ
KVHMQQHLSAVHYGIKGVECTEPGCEQKFSTKQGMQQHLKAVHVGLKDIE
CTDPECDHMFSIRASMQRHYQRWHTIEGQQKKSRKQDRVRQVLESAYAVD
SECHVRYKGGCVPDPDNPTSSALELTTMFSALPT*
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mRNA from alignment at Contig_5:1415144..1416148+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Trimin1|158268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_5:1415144..1416148+ (Tribonema minus UTEX_B_3156 )
ATGGACGTGGACGAGGAACTGCTGACTAACAAGCGGGCTTGCGAGCCAGA
CATCGATGACAGGGAGCCCGAGGAGCCTAGGGGCGACAAACAGTTCGAGT
GCACACAGGAGGGTTGTGACAAGACATTCAGGCGCAAGAACACCATGATG
AAGCATATAGAGGCGGTCCACAGCGGCATCAAACAATTTGCATGTTCTGA
TCCCAACTATGACAAGACGTTTTCACAAAAAGCAAACATGCTCAAGCACG
CCGAAGCAGTCCACGGTGGCATCAAGAAGTTCGAATGTACTGACCCCGAC
TGTGACAAGACATTTTCTGGAAAAGCAAACATGCTCCAGCACGCCGAAGC
AGTCCACGGTGGCATCAAGAAGTTCGAATGTACCGACCCAGACTGTGACA
AGACATTTTCACAAAAGCCGAACATGCTCAAGCACATTGAAACGGTGCAC
GGCGGCATCAAGAAGTTCAAATGTACCGACCCTGACTGCGACAAGACATT
TTCCCAAAAAGCCAACATGCTCCGCCACATAGAGGCTGTCCACGGTGGGA
TAAAGGAATTTGAATGCAGTAATCCCTACTGTAAGCAGAGGTTCTACCAA
AAAGTCCACATGCAACAGCACCTTTCGGCGGTCCATTATGGTATTAAGGG
TGTAGAATGCACCGAACCTGGGTGTGAGCAAAAGTTCAGTACAAAACAGG
GCATGCAACAGCACCTCAAGGCGGTACACGTAGGCCTCAAGGATATAGAG
TGCACCGATCCTGAGTGCGATCACATGTTTTCAATAAGGGCCAGCATGCA
AAGGCACTACCAACGGTGGCACACCATAGAAGGGCAGCAGAAGAAGAGCC
GGAAGCAGGACCGAGTTCGCCAGGTGTTGGAGTCGGCTTACGCTGTGGAC
TCTGAGTGCCACGTGCGGTACAAAGGTGGCTGTGTACCTGACCCCGACAA
CCCGACAAGTTCTGCGCTCGAGTTGACTACCATGTTCTCGGCATTACCAA
CGTGA
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Coding sequence (CDS) from alignment at Contig_5:1415144..1416148+

>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Trimin1|158268|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_5:1415144..1416148+ (Tribonema minus UTEX_B_3156 )
ATGGACGTGGACGAGGAACTGCTGACTAACAAGCGGGCTTGCGAGCCAGA
CATCGATGACAGGGAGCCCGAGGAGCCTAGGGGCGACAAACAGTTCGAGT
GCACACAGGAGGGTTGTGACAAGACATTCAGGCGCAAGAACACCATGATG
AAGCATATAGAGGCGGTCCACAGCGGCATCAAACAATTTGCATGTTCTGA
TCCCAACTATGACAAGACGTTTTCACAAAAAGCAAACATGCTCAAGCACG
CCGAAGCAGTCCACGGTGGCATCAAGAAGTTCGAATGTACTGACCCCGAC
TGTGACAAGACATTTTCTGGAAAAGCAAACATGCTCCAGCACGCCGAAGC
AGTCCACGGTGGCATCAAGAAGTTCGAATGTACCGACCCAGACTGTGACA
AGACATTTTCACAAAAGCCGAACATGCTCAAGCACATTGAAACGGTGCAC
GGCGGCATCAAGAAGTTCAAATGTACCGACCCTGACTGCGACAAGACATT
TTCCCAAAAAGCCAACATGCTCCGCCACATAGAGGCTGTCCACGGTGGGA
TAAAGGAATTTGAATGCAGTAATCCCTACTGTAAGCAGAGGTTCTACCAA
AAAGTCCACATGCAACAGCACCTTTCGGCGGTCCATTATGGTATTAAGGG
TGTAGAATGCACCGAACCTGGGTGTGAGCAAAAGTTCAGTACAAAACAGG
GCATGCAACAGCACCTCAAGGCGGTACACGTAGGCCTCAAGGATATAGAG
TGCACCGATCCTGAGTGCGATCACATGTTTTCAATAAGGGCCAGCATGCA
AAGGCACTACCAACGGTGGCACACCATAGAAGGGCAGCAGAAGAAGAGCC
GGAAGCAGGACCGAGTTCGCCAGGTGTTGGAGTCGGCTTACGCTGTGGAC
TCTGAGTGCCACGTGCGGTACAAAGGTGGCTGTGTACCTGACCCCGACAA
CCCGACAAGTTCTGCGCTCGAGTTGACTACCATGTTCTCGGCATTACCAA
CGTGA
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