mRNA_242 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA) HSP 1 Score: 210 bits (534), Expect = 5.500e-69 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL Sbjct: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.520e-48 Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 QR+CVMTVVAPEGTNQKSE++ IRV+GCKE++AEANRWA+ +RDS +DVYV+KTN WAPLPPR+ EID V FTD RVQAV DS+ EHQ+GQKR+M+ERL Sbjct: 16 QRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 116
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.010e-45 Identity = 69/101 (68.32%), Postives = 89/101 (88.12%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 QR+CVMTVVAP GTNQK+++++IRV+GC+E+LAEANRWAKS+R+ + +DVY +KTN WAPLPPRI EID V FTD RVQAV DS+ EHQ+G+K++MM+RL Sbjct: 16 QRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRL 116
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CEP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP3_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.200e-41 Identity = 64/101 (63.37%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 QR+CVMT+VAP GTNQK+E + IRV+GC+ET+AEANRWAK+IRD +DV+ +KTN+WA LPP ++EID V TD RVQA+ DS+ EH++G KR+M+ERL Sbjct: 30 QRYCVMTIVAPHGTNQKAEQLTIRVHGCRETMAEANRWAKAIRDDNTFFDVFCLKTNAWAALPPNVNEIDNVNMTDGRVQAILDSHREHEKGTKREMVERL 130
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.040e-37 Identity = 55/101 (54.46%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 Q++ V+++VAPEGT QKS+DM+IR+YGC+ T+ +AN +A+ +RDS + +DVY ++T+ WAPLPPRI I++VQ TD R+Q++ DSY+EH +GQK +++ERL Sbjct: 12 QKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERL 112
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA) HSP 1 Score: 127 bits (320), Expect = 4.710e-36 Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQK 282 QRFCV+TVVAP GT Q+ +DM+IR++GCKET EA+ WA+S+RDS D +DVYV TN W PLPP +S ++EV FTD RVQ +HD++ +G+K Sbjct: 29 QRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEK 122
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.940e-28 Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 Q F V++V+AP GTNQ + D++IRVYGC +TL AN +A+S+RD+ D++DV V+ W PLPP EID V +TD RV + ++Y+ H +G+K M+ERL Sbjct: 29 QNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERL 129
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A2E6C2V9_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C2V9_9EURY) HSP 1 Score: 63.2 bits (152), Expect = 4.280e-10 Identity = 31/106 (29.25%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRG-------QKRDMME 297 Q F +++V PEG NQK + +++ GC T EA WAK ++ +DV+V+ W +PP ++ ++ + + +++ + Y +QR +KRDM+E Sbjct: 13 QLFACVSIVGPEGCNQKCDKFGLKIRGCFATQEEAANWAKKLQADDATFDVWVMSMGQWVLIPPDPAQCEDTHYANEKLEELMSGYRANQREAAKMFEERKRDMIE 118
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: Q91DI1_HAV01 (UKCH-2 n=2 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q91DI1_HAV01) HSP 1 Score: 59.7 bits (143), Expect = 2.140e-8 Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMME 297 Q F ++++VAPEG NQKS + I++ G +T+ A + A + +DV+VV W +PP + +I E ++ D + + E ++ QK+ +E Sbjct: 69 QNFALISIVAPEGLNQKSNKVCIKIKGVFDTVENARQHANDLTKHDPTFDVFVVSLYEWLLVPPDMDKISEQEYVDEELNTI---ITEFKKSQKQVQLE 164
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.800e-8 Identity = 23/38 (60.53%), Postives = 34/38 (89.47%), Query Frame = 1 Query: 190 PRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 303 P +++ID VQFTD+R+Q++ DSY++H +GQKRDM+ERL Sbjct: 54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERL 91 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154757 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGCGCTTCTGCGTAATGACCGTCGTCGCGCCCGAGGGCACGAACCAGAAback to top protein sequence of jgi.p|Trimin1|154757 >Trimin1|154757|gw1.3.520.1 ID=Trimin1|154757|gw1.3.520.1|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDback to top mRNA from alignment at Contig_3:813537..813839+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:813537..813839+ >mRNA_242 ID=mRNA_242|Name=jgi.p|Trimin1|154757|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_3:813537..813839+ (Tribonema minus UTEX_B_3156 )back to top |