mRNA_2363 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA) HSP 1 Score: 359 bits (921), Expect = 7.680e-126 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK 504
VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK
Sbjct: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVVCTRCGRGKHNAAVCFAK 168
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA) HSP 1 Score: 217 bits (552), Expect = 2.310e-70 Identity = 95/114 (83.33%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
VYTLKLRGGK+YVGFT NLPKRLEQHFTGTD AMWTK+YPMERV++IEYNGNKF E T LMLMA+HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACLKCGDPTHFA DC
Sbjct: 2 VYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0E0W1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E0W1_9ZZZZ) HSP 1 Score: 99.8 bits (247), Expect = 3.460e-23 Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPH-----------VVCTRCGRGKHNAAVCFA 501
+Y L+L GK+YVG T N RL+ HF SA WTK Y ++I++ N + + E M M +GIDNVRGG+FV+ + + G D C KCG HFA DC + Y D +DE + + V+C RCGR H A C+A
Sbjct: 4 IYILQLEQGKYYVGKTINPSFRLDSHFNSNGSA-WTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTINHLTQMKNGTNDKCFKCGTSGHFAKDCKKIKEEIVWCCEYCDKEFIDENKCEYHERNCKYNNEDSESEDECDDVICFRCGREGHYANSCYA 180
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ) HSP 1 Score: 95.1 bits (235), Expect = 2.500e-21 Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC---TSYNKRARMDTTYEDLPPV--DEGLFAA------RRELLRSPHVVCTRCGRGKHNAAVCFAK 504
+Y LKL+GGK+YVG + ++ R +QH G S+ WTK Y +++ + ME M +GI+NVRGGA+VT + ++K+LW A+D C +CG H+A C T N + E+ DE A RR P C CG+ H A+ C+++
Sbjct: 6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNGQGSS-WTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTCRATTDVNGNSLCSWECENCSKEFDDEKECEAHERMCGRRVNTIQPGNKCYSCGKYGHYASSCYSR 183
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU) HSP 1 Score: 94.7 bits (234), Expect = 5.400e-21 Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTS 348
+Y LKL GK+YVG T KR+E+H S WT+ Y V+DI N + F E L LM+ GI+NVRGG+FV+ ++ Q+I L A + C KCG HFA DC +
Sbjct: 3 IYLLKLEAGKYYVGRTNKEEKRIEEHIELFGSE-WTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADCVN 117
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0LNL3_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LNL3_9ZZZZ) HSP 1 Score: 93.6 bits (231), Expect = 9.830e-21 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
+Y LKLR GK+Y+G TKN+ KR E+H TGT S WTK + +I + ++F E V MA +GI+NVRGG++ + +EK++ + + C++CG TH+ DC
Sbjct: 4 IYILKLRAGKYYIGKTKNIEKRYEEHLTGTGSG-WTKKHKPVSLIKTIKSTSQFDEDKYVKEYMAKYGIENVRGGSYSNIVLDENSIAVLEKEIRHSNNVCMRCGRDTHYIKDC 116
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ) HSP 1 Score: 93.2 bits (230), Expect = 1.120e-20 Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDE------GLFAARRELLRSPHVV---CTRCGRGKHNAAVCFA 501
+Y L+L+GG++YVG T ++ +R +QH G SA WTK Y + N + F E V M ++GI NVRGG++V+ + T ++ A++ ++ ATD C +CG HFA +C + + + D G + V C RCGR H + C+A
Sbjct: 5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGYGSA-WTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNCYATTELVESFDEEWECDYCDRTFTTKFGCGVHEKSCKEKNSRVSGKCYRCGREGHYSPECYA 179
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0E9U8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E9U8_9ZZZZ) HSP 1 Score: 92.4 bits (228), Expect = 1.840e-20 Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNKRARMDTTYEDLPPVDEGLFAARRELLRSPHVV----CTRCGRGKHNAAVCFA 501
+Y L+L GK+YVG T N RLE HF + + WTK Y +V++I++N + + E + M +GI+NVRGG+FV+ + + ++ + + G D C CG HFA C N++ ++T +D C RCGR H ++ C+A
Sbjct: 4 IYILQLEKGKYYVGKTNNPQFRLETHFN-LNGSEWTKIYKPLKVLEIKHNCDDYDEDKYTRIYMDKYGINNVRGGSFVSVKLSKSQKDILHQMRNGTHDKCFICGKGGHFAKYC---NEKECVETNNDDESXXXXXXXXXXXXXXXXXXXXXXDCCFRCGRKGHYSSSCYA 170
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0JC79_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JC79_9ZZZZ) HSP 1 Score: 90.9 bits (224), Expect = 1.170e-19 Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDCTSYNK-RARMDTTYEDLPPVD---------------EGLFAARR--ELLRSPH----VVCTRCGRGKHNAAVCFA 501
+YT++L GK+Y+G T N RL+ HF S WTK Y +V++I N + + E + M +GI+NVRGG+FV+ + ++K GA + C CG HFA DC D YE++ + E ++ ++ +++ + C RCGR H+A+ C+A
Sbjct: 4 IYTIQLDKGKYYIGKTNNPQFRLKSHFNSNGSE-WTKIYKPLKVLEITPNCDDYDEDKITIQYMDKYGINNVRGGSFVSVKLDRSTIDTLKKMSNGANNKCFICGKGGHFAKDCKENECWETDSDEDYEEVWGCEYCGKEFDTQKGAIYHENIYCKKKYKQIIYKSNDRKISSCFRCGRESHSASYCYA 191
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Match: A0A6C0HQA0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQA0_9ZZZZ) HSP 1 Score: 88.6 bits (218), Expect = 1.380e-19 Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 342
+Y L+L GKFYVG T N RL+ HF SA WTK Y ++I++ N + + E M M +GIDNVRGG+FV+ + + + G D C CG HFA DC
Sbjct: 4 IYILQLEKGKFYVGKTINPSFRLDSHFNSNGSA-WTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTKTHLTQMKNGTNDKCFNCGKSGHFAKDC 116 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140995 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCTACACACTGAAGCTGCGGGGGGGCAAATTCTATGTGGGGTTCACAAAback to top protein sequence of jgi.p|Trimin1|140995 >Trimin1|140995|gw1.5.120.1 ID=Trimin1|140995|gw1.5.120.1|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNback to top mRNA from alignment at Contig_5:1017325..1017828- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_5:1017325..1017828- >mRNA_2363 ID=mRNA_2363|Name=jgi.p|Trimin1|140995|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_5:1017325..1017828- (Tribonema minus UTEX_B_3156 )back to top |