mRNA_2352 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158368
Unique NamemRNA_2352
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.360e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF 420
            MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF
Sbjct:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF 140
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.980e-57
Identity = 98/133 (73.68%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDV---TLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFML 390
            M+L+NITA IRVD ATN+GSVIDVIRLV+P+  S +A+     LT ++         LRIN KGKP+P ADAKTLVEIV+SLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIE+RHHTLQQTEGGRAAQAF L
Sbjct:    1 MDLTNITATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQTEGGRAAQAFTL 133
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BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.130e-53
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTK---DVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLAD 396
            M++++ T +IRVD+A+N+GSVIDVIRLV PN  S  A+   A L     DV  +  HLRIN KGKPTPCADAKTLVEIVWSLPGKAAR+FRR SA TVCR+LGGDLS+VQEIE RHH LQ+TEGG A Q F+++D
Sbjct:    1 MDVADFTTSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKTEGGHAVQGFLMSD 135
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835Z1M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.450e-52
Identity = 91/140 (65.00%), Postives = 105/140 (75.00%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF 420
            M+++N    IRVD AT  GSVIDVI L+NP     NA   L  L +D+    S LRIN KGK TPCADA+TLVE+VWSLPGKAAR+FRR SAK VCRVLGGDL++  EIE RHH LQ ++ G+AAQAFMLADSDDS DGF
Sbjct:    1 MDIANFNTCIRVDNATQMGSVIDVINLINPY--ESNAPKTLTRLPQDLIAKCSQLRINGKGKLTPCADAQTLVEVVWSLPGKAARDFRRESAKAVCRVLGGDLTLADEIEARHHALQGSDEGQAAQAFMLADSDDSGDGF 138
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BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.500e-51
Identity = 93/139 (66.91%), Postives = 109/139 (78.42%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLV---NPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDS 408
            M+L ++TAAIRVDTATN+GSVIDVI++V   N +  S     +L ++  D+      LRIN+KG+ TPCADAKTLVEIVWSLPGKAAREFRR SA  VCRVLGGDLSIVQE+E RHH LQQTEGGRAAQ F+L DS+ S
Sbjct:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESS 139
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 173 bits (439), Expect = 9.970e-51
Identity = 94/142 (66.20%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKD-VTLNYS--HLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDG 417
            M+L+N+TA+IRVD AT  GSVIDVIR+VNPN     A   +A LT D  TL  S  H+RIN KGKPTPCA A+ LVE+V+ LPGKAAR+FRR SA TVCRVLGGDLSIV E+E RHH LQQTEGGRAAQ F+L D + S+ G
Sbjct:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATG 142
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 7.840e-50
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLV---NPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLAD 396
            M+L+N+TAAIRVDTATN+GSVIDVI++V   N +  S     +L ++   +    + LRIN KGK T CADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIV+E+E RHH LQ T GGRAAQ F+L D
Sbjct:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGD 135
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835YUW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.930e-48
Identity = 91/143 (63.64%), Postives = 106/143 (74.13%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTK---DVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF 420
            M+L+NITA IRVDTAT  GSV+DVI +V+P    GN +  L+ L K   D+      L+IN KG  TP ADAKTL+EIVW LPGKAAREFRRTSAKTVCRVLGGDLS+ +EIE  HH  Q ++ G+AAQA MLADSDDS  GF
Sbjct:    1 MDLTNITATIRVDTATQLGSVMDVIAMVDP----GNPSLSLSRLIKGVPDLIEKCKKLKINGKGNVTPVADAKTLIEIVWLLPGKAAREFRRTSAKTVCRVLGGDLSLAEEIEAHHHAQQGSDEGQAAQALMLADSDDSDHGF 139
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.110e-43
Identity = 84/135 (62.22%), Postives = 97/135 (71.85%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLT---KDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLAD 396
            MEL++I AAIR+D A+  GSV+DVIRLVNP   S  A++    L     DV  +   LRIN  GK TPCADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V EIE R   LQ TE GRAAQ F++ D
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGD 135
[Close]
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.650e-39
Identity = 77/135 (57.04%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANV---LANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLAD 396
            MEL +I  AIR+D A+N GSV+DVIRLVNP   S    +    LA    DV  +   LR+N  GK TPCADA+TLV+ VWSLPGK A  FRRTSA TVCR++GGD+S+V EIE R   LQ TE GRAA+ F++ D
Sbjct:    1 MELVDIPTAIRIDLASNMGSVLDVIRLVNPETPSNQVPSTFKRLATELPDVASSCCQLRMNRNGKLTPCADARTLVQNVWSLPGKPACAFRRTSATTVCRIVGGDVSLVDEIEGRCRALQATEVGRAARDFLIGD 135
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZ27_9STRA1.360e-92100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YNN1_9STRA4.980e-5773.68Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YYW8_9STRA6.130e-5366.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1M0_9STRA2.450e-5265.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA1.500e-5166.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA9.970e-5166.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA7.840e-5067.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUW0_9STRA2.930e-4863.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA2.110e-4362.22Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A836CKR7_9STRA3.650e-3957.04Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:987517..987936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158368|e_gw1.5.259.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue1.26e-29
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId158690
TrackFilteredModels1
ProteinId158368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158368gene_2352Tribonema minus UTEX_B_3156 geneContig_5 987517..987936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2352_1exon_2352_1Tribonema minus UTEX_B_3156 exonContig_5 987517..987936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2352CDS_2352Tribonema minus UTEX_B_3156 CDSContig_5 987517..987936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158368Trimin1|158368|e_gw1.5.259.1Tribonema minus UTEX_B_3156 polypeptideContig_5 987517..987936 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Trimin1|158368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_5:987517..987936- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCTCCAACATCACCGCAGCGATCCGGGTTGACACAGCAACTAA
TCAGGGGTCGGTCATTGATGTGATTCGTTTAGTGAACCCGAATCCTACCA
GTGGCAACGCCGCTAATGTGCTTGCCAACTTGACTAAAGATGTGACTCTC
AATTATAGCCACCTCCGGATCAATGCCAAAGGCAAACCCACCCCCTGTGC
CGACGCCAAAACCCTGGTCGAAATCGTGTGGTCACTTCCGGGCAAGGCCG
CACGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCCGCGTGCTCGGA
GGCGACCTCTCGATCGTCCAGGAGATCGAGAAGCGCCACCACACGTTGCA
GCAGACCGAGGGTGGCAGGGCCGCTCAGGCGTTCATGCTCGCGGACTCGG
ATGACAGTAGTGACGGCTTC
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protein sequence of jgi.p|Trimin1|158368

>Trimin1|158368|e_gw1.5.259.1 ID=Trimin1|158368|e_gw1.5.259.1|Name=jgi.p|Trimin1|158368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKDVTL
NYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLG
GDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDGF
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mRNA from alignment at Contig_5:987517..987936-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Trimin1|158368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_5:987517..987936- (Tribonema minus UTEX_B_3156 )
ATGGAGCTCTCCAACATCACCGCAGCGATCCGGGTTGACACAGCAACTAA
TCAGGGGTCGGTCATTGATGTGATTCGTTTAGTGAACCCGAATCCTACCA
GTGGCAACGCCGCTAATGTGCTTGCCAACTTGACTAAAGATGTGACTCTC
AATTATAGCCACCTCCGGATCAATGCCAAAGGCAAACCCACCCCCTGTGC
CGACGCCAAAACCCTGGTCGAAATCGTGTGGTCACTTCCGGGCAAGGCCG
CACGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCCGCGTGCTCGGA
GGCGACCTCTCGATCGTCCAGGAGATCGAGAAGCGCCACCACACGTTGCA
GCAGACCGAGGGTGGCAGGGCCGCTCAGGCGTTCATGCTCGCGGACTCGG
ATGACAGTAGTGACGGCTTC
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Coding sequence (CDS) from alignment at Contig_5:987517..987936-

>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Trimin1|158368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_5:987517..987936- (Tribonema minus UTEX_B_3156 )
ATGGAGCTCTCCAACATCACCGCAGCGATCCGGGTTGACACAGCAACTAA
TCAGGGGTCGGTCATTGATGTGATTCGTTTAGTGAACCCGAATCCTACCA
GTGGCAACGCCGCTAATGTGCTTGCCAACTTGACTAAAGATGTGACTCTC
AATTATAGCCACCTCCGGATCAATGCCAAAGGCAAACCCACCCCCTGTGC
CGACGCCAAAACCCTGGTCGAAATCGTGTGGTCACTTCCGGGCAAGGCCG
CACGCGAGTTTCGGCGCACCAGTGCCAAGACGGTGTGCCGCGTGCTCGGA
GGCGACCTCTCGATCGTCCAGGAGATCGAGAAGCGCCACCACACGTTGCA
GCAGACCGAGGGTGGCAGGGCCGCTCAGGCGTTCATGCTCGCGGACTCGG
ATGACAGTAGTGACGGCTTC
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