mRNA_2200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158683
Unique NamemRNA_2200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A835YRC6_9STRA (SEP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC6_9STRA)

HSP 1 Score: 331 bits (848), Expect = 1.780e-114
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MRQLDAATGGNAAPLLAAERENQRLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQLDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            MRQLDAATGGNAAPLLAAERENQRLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQLDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR
Sbjct:    1 MRQLDAATGGNAAPLLAAERENQRLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQLDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 175
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A7S2SMP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMP3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.900e-32
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 1 
Query:   58 RENQRLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQLDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +ENQ LR+Q+ EMETFL DYGL WVG  +G            +R    P  E     P +D DL++ ++ +LN + L+E G  VV  GR+A+    D V+L+++ADGL++  +G   R +    T  F+ D++DGFFP E +  YPDG L  VQD+
Sbjct:   79 KENQALRQQIHEMETFLADYGLIWVGAKAGDAEG------SDERAPACPGPESKEEGPAIDFDLMVRKVKELNGL-LDEVGPQVVSDGRKAKFEDQDVVSLTLFADGLTV--QGGAFRPFHEATTMTFVNDIVDGFFPHEFKEAYPDGVLLTVQDQ 225
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: UPI0005227209 (LOW QUALITY PROTEIN: UBX domain-containing protein 11 n=1 Tax=Leptosomus discolor TaxID=188344 RepID=UPI0005227209)

HSP 1 Score: 106 bits (264), Expect = 6.580e-24
Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQ--LDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+ QV EME FLNDYGL WVG              + +      W  G A V +  +D DL++  + DLN ++  E G  +  +   ARL +P+ + L +Y +G+  G  G   R Y+   TQ F++D++DG+FPSEL+ RYPDG   +V DR
Sbjct:   68 QLQTQVWEMERFLNDYGLIWVGERHEQLEDFESLKDEEELPARSLWKPGEAVVSKHRIDFDLILENVKDLN-VLAGEGGSQIEHTPGGARLRQPEPLLLMLYQNGIITGFNGP-FRPYEDPSTQQFLQDIMDGYFPSELQMRYPDGIPLQVTDR 219
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A099ZUU6_TINGU (UBX domain-containing protein 11 (Fragment) n=2 Tax=Tinamus guttatus TaxID=94827 RepID=A0A099ZUU6_TINGU)

HSP 1 Score: 102 bits (253), Expect = 2.490e-23
Identity = 56/154 (36.36%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGA--ATVPQLDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            RL+ QV EME FLNDYGL WVG S            + +      W  G   A+  Q+D DL++  + DLN +  E     +  + + ARL +P+++ L++Y DG+ +G      R Y+   +Q ++RD++DG+FPSEL+ RYP+G   +V D+
Sbjct:   70 RLQTQVWEMERFLNDYGLIWVGESHEQLEDLEACKDEEELPARRLWKPGETIASKFQIDFDLVLENVKDLNALAGEGLSE-IEHTPQGARLRQPESLPLTLYGDGMVMGN--GPFRPYEEPSSQQYLRDIMDGYFPSELQPRYPNGVPLQVTDK 220
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A8D0DJ55_9SAUR (UBX domain protein 11 n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DJ55_9SAUR)

HSP 1 Score: 104 bits (259), Expect = 5.760e-23
Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQ--LDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+RQ+ EME FLNDYGL WVG  +           + D+ +   W  G A V +  +DLDL++  + DLN +  E     + R+   ARL + D+V L+ Y +G+ +       R Y+   TQ  +RD++DG+FPSEL+RRYP+G   +V D+
Sbjct:  141 QLKRQIWEMERFLNDYGLIWVGEGTETLEELELLKEEEDQPLRSLWKPGDAVVSERPIDLDLILENLKDLNALAGEGMSQ-IERTAGGARLRQLDSVPLTFYQNGIVMFN--GPFRSYEEPSTQRCLRDLMDGYFPSELQRRYPEGVPFQVTDK 291
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: UPI001553551F (UBX domain-containing protein 11 isoform X1 n=2 Tax=Trachemys scripta elegans TaxID=31138 RepID=UPI001553551F)

HSP 1 Score: 101 bits (252), Expect = 2.420e-22
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQ--LDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+ QV EME FLNDYGL WVG ++              R +   W  G +TV +  +D DL++  + DLN ++  E    + R+   ARL +P ++AL+ Y +G+ +       R Y+   TQ  ++D++DG+FPSEL+ RYPDG   +V DR
Sbjct:  140 QLQNQVWEMERFLNDYGLIWVGENNEQLKSLKKQENQPSRSL---WKPGDSTVSKHLIDFDLILENLKDLN-VLAGEGVSQIERTAGGARLRQPQSIALTFYQNGIVMFN--GPFRSYEEPSTQQCLQDIMDGYFPSELQTRYPDGVPFQVTDR 287
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A8C3ILU2_CHRPI (UBX domain protein 11 n=24 Tax=Durocryptodira TaxID=1579337 RepID=A0A8C3ILU2_CHRPI)

HSP 1 Score: 102 bits (254), Expect = 2.850e-22
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQ--LDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+ QV EME FLNDYGL WVG S+              R +   W  G +TV +  +D DL++  + DLN ++  E    + R+   ARL +P ++AL+ Y +G+ +       R Y+   TQ  ++D++DG+FPSEL+ RYPDG   +V DR
Sbjct:  140 QLQNQVWEMERFLNDYGLIWVGESNEQLKSLKKQENQPSRGL---WKPGDSTVSKHLIDFDLILENLKDLN-VLAGEGVSQIERTAGGARLRQPQSIALTFYQNGIVMFN--GPFRSYEEPSTQQCLQDIMDGYFPSELQTRYPDGVPFQVTDR 287
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: W5K3H7_ASTMX (UBX domain protein 11 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K3H7_ASTMX)

HSP 1 Score: 102 bits (254), Expect = 3.030e-22
Identity = 67/155 (43.23%), Postives = 95/155 (61.29%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVP--QLDLDLLIARIHDLNTIILEERGGGVVRS-GRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+RQV EME FLNDYG+ WVG    XXXXXXX    ++  +   W  GA+ VP   ++ DL++  + DLN  IL   G   V S    ARL+RPD V+L +Y +G+ +       R Y    TQ  ++D++DG+FPSEL+ R+PDG + ++QDR
Sbjct:  142 KLQRQVWEMEKFLNDYGMIWVGNGEDXXXXXXXEEAVSEDQL---WRPGASVVPGFSVNFDLVVQNVLDLN--ILAGEGESCVTSVPGGARLTRPDPVSLQLYKNGIVMFN--GPFRSYQDPSTQRCMQDLMDGYFPSELQDRFPDGVIFQIQDR 289
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: A0A1U8CZ30_ALLSI (UBX domain-containing protein 11 n=5 Tax=Crocodylia TaxID=1294634 RepID=A0A1U8CZ30_ALLSI)

HSP 1 Score: 102 bits (253), Expect = 3.980e-22
Identity = 56/154 (36.36%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLPWTEGAATVPQ--LDLDLLIARIHDLNTIILEERGGGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+RQV EME FLNDYGL WVG  +           +      + W  G +T P+  +D DL++  + DLN ++  E    +  +   ARL  P++V+L++Y +G+ +       R Y+   TQ  +RD+LDG+FPSEL+ RYP G   +V D+
Sbjct:  140 QLQRQVWEMERFLNDYGLIWVGEKNAELEDLESSGKEASWPSRVFWKPGDSTAPKPPIDFDLILENLKDLN-VLAGEGVSQIQHTAGGARLREPESVSLTLYKNGIVMFS--GPFRSYEEPSTQQCLRDILDGYFPSELQARYPAGVPFQVTDK 290
[Close]
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Match: UPI0018F69A96 (UBX domain-containing protein 11 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F69A96)

HSP 1 Score: 101 bits (252), Expect = 8.350e-22
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 1 
Query:   70 RLRRQVEEMETFLNDYGLKWVGTSSGXXXXXXXXXIDTDRDVLLP-WTEGAATVPQ-LDLDLLIARIHDLNTIILEERGGG---VVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRDVLDGFFPSELRRRYPDGFLTEVQDR 525
            +L+ Q+  ME FL DYGL WVG +            + +   L P W  G +TVP+ +D DLL++R+ DLN +     G G   V R+   ARL  PD + L++Y +G+ L  +G   R Y    TQ  ++D+LDGFFPSEL+ RYPDG   +V DR
Sbjct:  481 QLQSQISAMERFLGDYGLTWVGETLEEW--------EEEPLALGPLWKPGESTVPRDVDFDLLLSRLRDLNIVA----GAGQPRVERTASGARLKLPDPLPLTLYGNGIVLC-QGP-FRAYSEPSTQKCLQDILDGFFPSELQTRYPDGVPFQVSDR 623
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158683 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRC6_9STRA1.780e-114100.00SEP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2SMP3_9STRA6.900e-3240.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI00052272096.580e-2437.66LOW QUALITY PROTEIN: UBX domain-containing protein... [more]
A0A099ZUU6_TINGU2.490e-2336.36UBX domain-containing protein 11 (Fragment) n=2 Ta... [more]
A0A8D0DJ55_9SAUR5.760e-2337.66UBX domain protein 11 n=2 Tax=Salvator merianae Ta... [more]
UPI001553551F2.420e-2237.01UBX domain-containing protein 11 isoform X1 n=2 Ta... [more]
A0A8C3ILU2_CHRPI2.850e-2237.66UBX domain protein 11 n=24 Tax=Durocryptodira TaxI... [more]
W5K3H7_ASTMX3.030e-2243.23UBX domain protein 11 n=1 Tax=Astyanax mexicanus T... [more]
A0A1U8CZ30_ALLSI3.980e-2236.36UBX domain-containing protein 11 n=5 Tax=Crocodyli... [more]
UPI0018F69A968.350e-2240.76UBX domain-containing protein 11 n=1 Tax=Tachyglos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:1393128..1393652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158683|e_gw1.6.24.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032182,GO:0043130,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Preferred nameUBXN11
DescriptionUBX domain protein 11
COG categoryY
Max annot lvl33208|Metazoa
EggNOG OGsKOG2086@1|root,KOG2086@2759|Eukaryota,38H77@33154|Opisthokonta,3BJXH@33208|Metazoa,3CZ5C@33213|Bilateria,48BHE@7711|Chordata,48V29@7742|Vertebrata,49WMT@7898|Actinopterygii
Evalue4.45e-23
Seed ortholog215358.XP_010752563.1
Hectar predicted targeting categoryother localisation
TranscriptId159005
TrackFilteredModels1
ProteinId158683
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158683gene_2200Tribonema minus UTEX_B_3156 geneContig_6 1393128..1393652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2200_1exon_2200_1Tribonema minus UTEX_B_3156 exonContig_6 1393128..1393652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2200CDS_2200Tribonema minus UTEX_B_3156 CDSContig_6 1393128..1393652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158683Trimin1|158683|e_gw1.6.24.1Tribonema minus UTEX_B_3156 polypeptideContig_6 1393128..1393652 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Trimin1|158683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_6:1393128..1393652- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCAACTCGACGCGGCCACCGGCGGAAACGCTGCGCCGCTGCTGGC
GGCCGAGAGAGAGAATCAGAGGCTCAGACGGCAGGTGGAGGAAATGGAGA
CATTCCTAAATGACTACGGGTTGAAGTGGGTAGGCACTAGCAGCGGCGGT
GGCGGCGACGCTCCCCCACCGCCAATTGACACCGACAGGGACGTCCTTCT
GCCATGGACCGAGGGCGCGGCCACGGTGCCGCAGCTCGATCTCGACCTGC
TCATCGCCCGCATCCACGACCTCAACACGATAATCCTGGAAGAGCGTGGC
GGCGGCGTCGTCCGCAGCGGCCGCCGCGCGCGCCTCTCGCGGCCCGACAC
CGTCGCGCTGAGCATCTACGCGGACGGCCTGTCGCTCGGCGGCGAGGGCA
GCTGCCTGCGCCGCTACGACGCCGTCGACACGCAGGCCTTCATACGCGAC
GTACTGGACGGTTTCTTCCCGTCCGAGCTGCGCCGGCGCTACCCCGACGG
CTTCCTGACGGAGGTGCAGGACAGG
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protein sequence of jgi.p|Trimin1|158683

>Trimin1|158683|e_gw1.6.24.1 ID=Trimin1|158683|e_gw1.6.24.1|Name=jgi.p|Trimin1|158683|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MRQLDAATGGNAAPLLAAERENQRLRRQVEEMETFLNDYGLKWVGTSSGG
GGDAPPPPIDTDRDVLLPWTEGAATVPQLDLDLLIARIHDLNTIILEERG
GGVVRSGRRARLSRPDTVALSIYADGLSLGGEGSCLRRYDAVDTQAFIRD
VLDGFFPSELRRRYPDGFLTEVQDR
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mRNA from alignment at Contig_6:1393128..1393652-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Trimin1|158683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_6:1393128..1393652- (Tribonema minus UTEX_B_3156 )
ATGCGGCAACTCGACGCGGCCACCGGCGGAAACGCTGCGCCGCTGCTGGC
GGCCGAGAGAGAGAATCAGAGGCTCAGACGGCAGGTGGAGGAAATGGAGA
CATTCCTAAATGACTACGGGTTGAAGTGGGTAGGCACTAGCAGCGGCGGT
GGCGGCGACGCTCCCCCACCGCCAATTGACACCGACAGGGACGTCCTTCT
GCCATGGACCGAGGGCGCGGCCACGGTGCCGCAGCTCGATCTCGACCTGC
TCATCGCCCGCATCCACGACCTCAACACGATAATCCTGGAAGAGCGTGGC
GGCGGCGTCGTCCGCAGCGGCCGCCGCGCGCGCCTCTCGCGGCCCGACAC
CGTCGCGCTGAGCATCTACGCGGACGGCCTGTCGCTCGGCGGCGAGGGCA
GCTGCCTGCGCCGCTACGACGCCGTCGACACGCAGGCCTTCATACGCGAC
GTACTGGACGGTTTCTTCCCGTCCGAGCTGCGCCGGCGCTACCCCGACGG
CTTCCTGACGGAGGTGCAGGACAGG
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Coding sequence (CDS) from alignment at Contig_6:1393128..1393652-

>mRNA_2200 ID=mRNA_2200|Name=jgi.p|Trimin1|158683|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_6:1393128..1393652- (Tribonema minus UTEX_B_3156 )
ATGCGGCAACTCGACGCGGCCACCGGCGGAAACGCTGCGCCGCTGCTGGC
GGCCGAGAGAGAGAATCAGAGGCTCAGACGGCAGGTGGAGGAAATGGAGA
CATTCCTAAATGACTACGGGTTGAAGTGGGTAGGCACTAGCAGCGGCGGT
GGCGGCGACGCTCCCCCACCGCCAATTGACACCGACAGGGACGTCCTTCT
GCCATGGACCGAGGGCGCGGCCACGGTGCCGCAGCTCGATCTCGACCTGC
TCATCGCCCGCATCCACGACCTCAACACGATAATCCTGGAAGAGCGTGGC
GGCGGCGTCGTCCGCAGCGGCCGCCGCGCGCGCCTCTCGCGGCCCGACAC
CGTCGCGCTGAGCATCTACGCGGACGGCCTGTCGCTCGGCGGCGAGGGCA
GCTGCCTGCGCCGCTACGACGCCGTCGACACGCAGGCCTTCATACGCGAC
GTACTGGACGGTTTCTTCCCGTCCGAGCTGCGCCGGCGCTACCCCGACGG
CTTCCTGACGGAGGTGCAGGACAGG
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