mRNA_211 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157207
Unique NamemRNA_211
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157207 vs. uniprot
Match: A0A836CF86_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF86_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.700e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF 255
            MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF
Sbjct:    1 MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLF 85
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BLAST of jgi.p|Trimin1|157207 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.160e-12
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    7 KLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 195
            + C  P C   A  KWC+DH   + CR EGC KR+ +   G GAQWC THK+EGM DV++  C
Sbjct:   53 RTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRC 115
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BLAST of jgi.p|Trimin1|157207 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-11
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    7 KLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 195
            K C  P C   A  KWC+DH   + CR EGC K T +   G GAQWC THK+EGM +VV   C
Sbjct:   53 KTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQC 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157207 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CF86_9STRA1.700e-58100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAP8_9STRA5.160e-1249.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL77_9STRA1.070e-1150.79Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:734295..735047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157207|e_gw1.3.170.1
Hectar predicted targeting categoryother localisation
TranscriptId157529
TrackFilteredModels1
ProteinId157207
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157207gene_211Tribonema minus UTEX_B_3156 geneContig_3 734295..735047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_211_1exon_211_1Tribonema minus UTEX_B_3156 exonContig_3 734295..735047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_211CDS_211Tribonema minus UTEX_B_3156 CDSContig_3 734295..735047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157207Trimin1|157207|e_gw1.3.170.1Tribonema minus UTEX_B_3156 polypeptideContig_3 734295..735047 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_211 ID=mRNA_211|Name=jgi.p|Trimin1|157207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=753bp|location=Sequence derived from alignment at Contig_3:734295..735047- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAAGCTGTGTTGCGCGCCGGGGTGCCACAACACTGCTGCGCACAA
GTGGTGCCAGGACCACCTATCATCCAGAACATGCCGTAAGGAAGGATGTA
CGAAACGCACACGGTTCAACCATCGTGGCCAGGGGGCACAGTGGTGTGGG
ACACATAAGGACGAGGGAATGATTGACGTCGTCAGCAGCACATGCAGCGC
TGGCTGTGGCAAGATACCATGTTTTGAGCGGCCAGGACTACCAGGCGTGT
TGTTTTGCCGAACATGTGCAGGCAAGGATGCTATGGATGTGACGCATGCC
AAGTGCGCTGGCAATTGCGGAAGACGCCCAAGCTTTGAACGGCCTGATGA
AGAAGGCGTGCTTTATTGTCAAGCCTGTGGCGGTCCACATGCAGTCAACG
TGACATACAAATTGTGCACGAGCGGGTGTGGAAAGCGCCCATACTTCGAA
CGCCCCGGTGAGCCAGGTGTTTACTTTTGCCGACAGTGTGGCGGGGCGGA
TGCCGTCAATGTAAAGAATATTTTGTGCAGAGGTGGTTGCGGAAAGCGCC
CAAGTTTCGAGACGCCAGGAAAGCAAGGGCTCTTTTGTCGCGAATGTGGT
GGACAAGACGCCGTCGATGTCATGCACGACCGGTGTGCAGGTGGATGCGG
AAGGGTGCCGGTCTTTGAGCGGCCCGCAGAGCCCGGGTTGTTTTTCTGTC
GTGAGTGCGGGGGGCCCGATGCGGTGGACGTCAGAACTGTCCGGTGTGAA
CAC
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protein sequence of jgi.p|Trimin1|157207

>Trimin1|157207|e_gw1.3.170.1 ID=Trimin1|157207|e_gw1.3.170.1|Name=jgi.p|Trimin1|157207|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp
MIKLCCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCG
THKDEGMIDVVSSTCSAGCGKIPCFERPGLPGVLFCRTCAGKDAMDVTHA
KCAGNCGRRPSFERPDEEGVLYCQACGGPHAVNVTYKLCTSGCGKRPYFE
RPGEPGVYFCRQCGGADAVNVKNILCRGGCGKRPSFETPGKQGLFCRECG
GQDAVDVMHDRCAGGCGRVPVFERPAEPGLFFCRECGGPDAVDVRTVRCE
H
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mRNA from alignment at Contig_3:734295..735047-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_211 ID=mRNA_211|Name=jgi.p|Trimin1|157207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=753bp|location=Sequence derived from alignment at Contig_3:734295..735047- (Tribonema minus UTEX_B_3156 )
ATGATAAAGCTGTGTTGCGCGCCGGGGTGCCACAACACTGCTGCGCACAA
GTGGTGCCAGGACCACCTATCATCCAGAACATGCCGTAAGGAAGGATGTA
CGAAACGCACACGGTTCAACCATCGTGGCCAGGGGGCACAGTGGTGTGGG
ACACATAAGGACGAGGGAATGATTGACGTCGTCAGCAGCACATGCAGCGC
TGGCTGTGGCAAGATACCATGTTTTGAGCGGCCAGGACTACCAGGCGTGT
TGTTTTGCCGAACATGTGCAGGCAAGGATGCTATGGATGTGACGCATGCC
AAGTGCGCTGGCAATTGCGGAAGACGCCCAAGCTTTGAACGGCCTGATGA
AGAAGGCGTGCTTTATTGTCAAGCCTGTGGCGGTCCACATGCAGTCAACG
TGACATACAAATTGTGCACGAGCGGGTGTGGAAAGCGCCCATACTTCGAA
CGCCCCGGTGAGCCAGGTGTTTACTTTTGCCGACAGTGTGGCGGGGCGGA
TGCCGTCAATGTAAAGAATATTTTGTGCAGAGGTGGTTGCGGAAAGCGCC
CAAGTTTCGAGACGCCAGGAAAGCAAGGGCTCTTTTGTCGCGAATGTGGT
GGACAAGACGCCGTCGATGTCATGCACGACCGGTGTGCAGGTGGATGCGG
AAGGGTGCCGGTCTTTGAGCGGCCCGCAGAGCCCGGGTTGTTTTTCTGTC
GTGAGTGCGGGGGGCCCGATGCGGTGGACGTCAGAACTGTCCGGTGTGAA
CAC
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Coding sequence (CDS) from alignment at Contig_3:734295..735047-

>mRNA_211 ID=mRNA_211|Name=jgi.p|Trimin1|157207|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=753bp|location=Sequence derived from alignment at Contig_3:734295..735047- (Tribonema minus UTEX_B_3156 )
ATGATAAAGCTGTGTTGCGCGCCGGGGTGCCACAACACTGCTGCGCACAA
GTGGTGCCAGGACCACCTATCATCCAGAACATGCCGTAAGGAAGGATGTA
CGAAACGCACACGGTTCAACCATCGTGGCCAGGGGGCACAGTGGTGTGGG
ACACATAAGGACGAGGGAATGATTGACGTCGTCAGCAGCACATGCAGCGC
TGGCTGTGGCAAGATACCATGTTTTGAGCGGCCAGGACTACCAGGCGTGT
TGTTTTGCCGAACATGTGCAGGCAAGGATGCTATGGATGTGACGCATGCC
AAGTGCGCTGGCAATTGCGGAAGACGCCCAAGCTTTGAACGGCCTGATGA
AGAAGGCGTGCTTTATTGTCAAGCCTGTGGCGGTCCACATGCAGTCAACG
TGACATACAAATTGTGCACGAGCGGGTGTGGAAAGCGCCCATACTTCGAA
CGCCCCGGTGAGCCAGGTGTTTACTTTTGCCGACAGTGTGGCGGGGCGGA
TGCCGTCAATGTAAAGAATATTTTGTGCAGAGGTGGTTGCGGAAAGCGCC
CAAGTTTCGAGACGCCAGGAAAGCAAGGGCTCTTTTGTCGCGAATGTGGT
GGACAAGACGCCGTCGATGTCATGCACGACCGGTGTGCAGGTGGATGCGG
AAGGGTGCCGGTCTTTGAGCGGCCCGCAGAGCCCGGGTTGTTTTTCTGTC
GTGAGTGCGGGGGGCCCGATGCGGTGGACGTCAGAACTGTCCGGTGTGAA
CAC
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