mRNA_2117 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151949
Unique NamemRNA_2117
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA)

HSP 1 Score: 228 bits (581), Expect = 6.680e-76
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM
Sbjct:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.990e-61
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+W++ ED+AI  LV  +GVKRWSL+AQ+L+ E+ G VRSGKQCRTRWLNHLDPSLR++PWT EEEQVIY+AQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM
Sbjct:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.510e-56
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+WTR ED+AIVRLV  HG KRW+ +AQ LN EI GV RSGKQCRTRWLNHLDP+++KEPW+  EE +IYDAQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   49 ERRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 157
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.480e-55
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+W+R ED+AIVRLV  HG KRW+++AQ LN EI GV RSGKQCRTRWLNHLDP+++KEPW+  EE++IYDAQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   38 ERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 146
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 174 bits (441), Expect = 3.140e-54
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            +RR+W+R ED+AIVRLV  HG KRW++++Q LN E+ G  RSGKQCRTRWLNHLDP++++EPW+  EE VIY+AQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   25 QRRAWSRKEDDAIVRLVMTHGTKRWAVISQELNKELAGF-RSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A7S3JRY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRY5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.850e-52
Identity = 78/109 (71.56%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            +R++W+  EDE IVRLV +HG KRW+L++Q LN EI+GV RSGKQCRTRWLNHLDP++R+EPW+  EE +IY+AQ+ +GNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   13 QRKAWSCKEDETIVRLVEKHGTKRWALISQELNSEILGVNRSGKQCRTRWLNHLDPTIRREPWSDAEENIIYNAQQTIGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 121
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A3M6VGP6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGP6_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.530e-52
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+WTR EDEAI+RLV E+G KRWS+++ HLN E  G  R+GKQCRTRWLNHLDP+++K+PWT+EEEQ+I DAQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ M
Sbjct:   20 ERRAWTRKEDEAIIRLVDEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTM 128
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BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM)

HSP 1 Score: 177 bits (449), Expect = 8.320e-52
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+WTR ED+AI+RLV E+G KRWS+++ HLN E  G  R+GKQCRTRWLNHLDP+++K+PWT+EEEQVI DAQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ M
Sbjct:   19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTM 127
[Close]
BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.970e-52
Identity = 78/109 (71.56%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            +RR+W+R ED+AI+RLV +HG KRW++++Q LN E+ G  RSGKQCRTRWLNHLDP +++EPW+ +EE VIY+AQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   37 QRRAWSRKEDDAIMRLVGKHGTKRWAIISQELNKEVPGF-RSGKQCRTRWLNHLDPGIKREPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 144
[Close]
BLAST of jgi.p|Trimin1|151949 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC)

HSP 1 Score: 177 bits (450), Expect = 1.040e-51
Identity = 79/109 (72.48%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+WTR ED+AI+RLV E+G KRWS+++ HLN E  G  R+GKQCRTRWLNHLDP+++K+PWT+EEEQ+I DAQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ M
Sbjct:   19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTM 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151949 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS16_9STRA6.680e-76100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835ZPI2_9STRA6.990e-6180.73Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2G8M0_9STRA3.510e-5677.98Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S2ST59_9STRA1.480e-5577.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y4P7_AURAN3.140e-5472.48Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3JRY5_9STRA1.850e-5271.56Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A3M6VGP6_9STRA6.530e-5273.39Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
H3HDP9_PHYRM8.320e-5273.39Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A7S3ZTY8_9STRA9.970e-5271.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A484E484_BRELC1.040e-5172.48Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:700071..700920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151949|gw1.6.297.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,3Q8VY@4776|Peronosporales
Evalue1.36e-52
Seed ortholog164328.Phyra96342
Hectar predicted targeting categoryother localisation
TranscriptId152271
TrackFilteredModels1
ProteinId151949
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151949gene_2117Tribonema minus UTEX_B_3156 geneContig_6 700071..700920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151949Trimin1|151949|gw1.6.297.1Tribonema minus UTEX_B_3156 polypeptideContig_6 700071..700920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2117_2exon_2117_2Tribonema minus UTEX_B_3156 exonContig_6 700071..700251 -
exon_2117_1exon_2117_1Tribonema minus UTEX_B_3156 exonContig_6 700775..700920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2117CDS_2117Tribonema minus UTEX_B_3156 CDSContig_6 700775..700920 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2117 ID=mRNA_2117|Name=jgi.p|Trimin1|151949|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_6:700071..700920- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCGGCGCTCGTGGACGCGGTGCGAGGACGAGGCGATAGTGCGGCTGGT
TGCGGAGCACGGCGTCAAGCGCTGGTCCCTCGTCGCTCAGCACCTCAACA
TGGAGATCGTCGGCGTCGTGCGCTCCGGCAAGCAGTGCCGCACGAGGTGG
CTGAACCACCTGGACCCGTCCCTGCGGAAGGAGCCGTGGACGTCGGAGGA
AGAGCAGGTCATTTACGACGCGCAGCGCCGCCTCGGCAACAAGTGGGCGG
AGATCGCCAAGCTGCTGACGGGGCGCACGGACAACGCCATCAAGAATCAC
TGGTACTCGACGATGCGCAAGAACATG
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protein sequence of jgi.p|Trimin1|151949

>Trimin1|151949|gw1.6.297.1 ID=Trimin1|151949|gw1.6.297.1|Name=jgi.p|Trimin1|151949|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp
ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRW
LNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNH
WYSTMRKNM
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mRNA from alignment at Contig_6:700071..700920-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2117 ID=mRNA_2117|Name=jgi.p|Trimin1|151949|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=850bp|location=Sequence derived from alignment at Contig_6:700071..700920- (Tribonema minus UTEX_B_3156 )
GAGCGGCGCTCGTGGACGCGGTGCGAGGACGAGGCGATAGTGCGGCTGGT
TGCGGAGCACGGCGTCAAGCGCTGGTCCCTCGTCGCTCAGCACCTCAACA
TGGAGATCGTCGGCGTCGTGCGCTCCGGCAAGCAGTGCCGCACGAGGTGA
GCGCTCGCGAGAGAGAGTCCTTACGCGCGGAGCGGTGCTGCGCAGAGTAC
TGTGAGAAGAGCTGCAGTTGAGCTGTGCCATGTGATGAGCGTTGTGGCGT
GAAGCGCTGGGTCCTCATTGCTCGGTCTCTCACATCGGTCGCATGCTCCG
GCAAACAGTGCCGCACGAGGTAGGTGTCCGCGGCCGCGCGTTGAGAGGTT
GCGGGCGGCGCGGTGGTGCAATGAGCACTGTGCGAAGCTGAACTCGAGCA
ATGAATGATGTGCATTACTGCGGTACTTACTTACCCCACAGGTGGCTGAA
CCACCTGAACCCGTCCCTGAGGCACGAGCTCTCAAATCATAATGTGCGCA
TTGCTTTGGTACCTACTTACCCCACAGGAACAAGCTCTCAACTCACAACG
TATGCATCGATTTGATACCTACGTACCCCACAGGTGGTTGAACCACCTGG
ACCCGTCCCTGCCGAACGAGCTCTCAAATCAACATGTGTGCATTGCTTTG
ATACCTACGTACCCCGCAGGTGGCTGAACCACCTGGACCCGTCCCTGCGG
AAGGAGCCGTGGACGTCGGAGGAAGAGCAGGTCATTTACGACGCGCAGCG
CCGCCTCGGCAACAAGTGGGCGGAGATCGCCAAGCTGCTGACGGGGCGCA
CGGACAACGCCATCAAGAATCACTGGTACTCGACGATGCGCAAGAACATG
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Coding sequence (CDS) from alignment at Contig_6:700071..700920-

>mRNA_2117 ID=mRNA_2117|Name=jgi.p|Trimin1|151949|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_6:700071..700920- (Tribonema minus UTEX_B_3156 )
GAGCGGCGCTCGTGGACGCGGTGCGAGGACGAGGCGATAGTGCGGCTGGT
TGCGGAGCACGGCGTCAAGCGCTGGTCCCTCGTCGCTCAGCACCTCAACA
TGGAGATCGTCGGCGTCGTGCGCTCCGGCAAGCAGTGCCGCACGAGGTGG
CTGAACCACCTGGACCCGTCCCTGCGGAAGGAGCCGTGGACGTCGGAGGA
AGAGCAGGTCATTTACGACGCGCAGCGCCGCCTCGGCAACAAGTGGGCGG
AGATCGCCAAGCTGCTGACGGGGCGCACGGACAACGCCATCAAGAATCAC
TGGTACTCGACGATGCGCAAGAACATG
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