mRNA_2104 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|79212
Unique NamemRNA_2104
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|79212 vs. uniprot
Match: A0A835YR73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR73_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.980e-117
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 
Query:   79 MLGLRLWLLALCLLAITALTAAKEARAPSLFVRFLERFELGGQSGVVDNGRVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGAGVWHTRRTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEMPDGTKKKCLKHKIVPL 564
            MLGLRLWLLALCLLAITALTAAKEARAPSLFVRFLERFELGGQSGVVDNGRVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGAGVWHTRRTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEMPDGTKKKCLKHKIVPL
Sbjct:    1 MLGLRLWLLALCLLAITALTAAKEARAPSLFVRFLERFELGGQSGVVDNGRVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGAGVWHTRRTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEMPDGTKKKCLKHKIVPL 162
[Close]
BLAST of jgi.p|Trimin1|79212 vs. uniprot
Match: D7FKB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.660e-19
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:  187 RFELGGQSGVVDNGRVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGA---GVWHTRRTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEM 516
            R ++GG+   +   + V  VPP+PL+VFEYG  +R  + R+  KYKYQ VC++        G+WH RR P  W   +PPFHVRIVRPN VGML  ++   K++  +V+++V M
Sbjct:   73 RSQVGGEESQLS--KEVNSVPPKPLEVFEYGP-SRQAWMRDPEKYKYQFVCVVATRATVEEGIWHKRRAPRMW-SRQPPFHVRIVRPNPVGMLGHMLGTGKIK--FVQKDVTM 179
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|79212 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR73_9STRA1.980e-117100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FKB3_ECTSI2.660e-1943.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:627396..628617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|79212|CE79211_204
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005560.1
TranscriptId79534
TrackFilteredModels1
ProteinId79212
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|79212gene_2104Tribonema minus UTEX_B_3156 geneContig_6 627396..628617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2104_1exon_2104_1Tribonema minus UTEX_B_3156 exonContig_6 627396..627457 +
exon_2104_2exon_2104_2Tribonema minus UTEX_B_3156 exonContig_6 628025..628617 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2104UTR5_2104Tribonema minus UTEX_B_3156 five_prime_UTRContig_6 627396..627457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2104CDS_2104Tribonema minus UTEX_B_3156 CDSContig_6 628041..628529 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2104UTR3_2104Tribonema minus UTEX_B_3156 three_prime_UTRContig_6 628530..628617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|79212Trimin1|79212|CE79211_204Tribonema minus UTEX_B_3156 polypeptideContig_6 628041..628529 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Trimin1|79212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=655bp|location=Sequence derived from alignment at Contig_6:627396..628617+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCATTTGGAGCGCGCAGCAGAGCAGTGGCAGGAGCTCGGATCTGGACAG
GAGAGGAGGCAGGAGCCTAGAACGCACCATGCTAGGCCTGCGGCTTTGGC
TGCTGGCCCTCTGCTTGCTGGCGATCACAGCGCTAACAGCGGCAAAGGAG
GCCAGGGCGCCCAGCTTATTCGTCCGCTTCCTCGAGAGGTTCGAGCTGGG
GGGGCAGTCGGGGGTCGTGGACAACGGCAGAGTCGTGGAGGAGGTTCCGC
CGCGGCCGCTGCAGGTGTTTGAGTACGGCGCGCGCACACGCGCGGAGTTC
AAGCGCAACAAGGCCAAGTACAAGTACCAGCACGTGTGCCTGATGGACGG
GGAGGGGGCGGGCGTGTGGCACACGCGGCGCACGCCGTGGTTCTGGCGCG
GAAACAAGCCGCCGTTCCACGTGCGCATCGTGCGGCCCAATTTCGTCGGC
ATGCTGTACTTCCTCATGAGCAACGAGAAGGTGCGCGTGGACTGGGTGGA
GGAGGAAGTGGAGATGCCTGACGGCACTAAGAAGAAGTGCCTCAAGCACA
AGATCGTTCCTCTGTAGGGAGAGTGGGGGCGAAGGCGCGGGGCAGCCTGT
GGCATGCGTTTGTGCCACAGGCTTTACATTAATCATGATCAGTGCAGCTC
TTACA
back to top

protein sequence of jgi.p|Trimin1|79212

>Trimin1|79212|CE79211_204 ID=Trimin1|79212|CE79211_204|Name=jgi.p|Trimin1|79212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MLGLRLWLLALCLLAITALTAAKEARAPSLFVRFLERFELGGQSGVVDNG
RVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGAGVWHTR
RTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEMPDGT
KKKCLKHKIVPL*
back to top

mRNA from alignment at Contig_6:627396..628617+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Trimin1|79212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1222bp|location=Sequence derived from alignment at Contig_6:627396..628617+ (Tribonema minus UTEX_B_3156 )
GGCATTTGGAGCGCGCAGCAGAGCAGTGGCAGGAGCTCGGATCTGGACAG
GAGAGGAGGCAGGTGAGCTGCGACATGTGTGCGCTCTTCAAACCACACCC
AAACAAGTCATTGTTGAAGTCGCTGTGAAGCTCATGGGCGGTGAACGCGT
TGCTATGATCGGCTGAGCAGCGTAGTTTTTCCTACTTTGGGTGACCCAAA
CGTTGTTCAAAATCACGCACTCAAGAACAGGCTGGCCGTTGCTGCTGCAA
CACTTGTGCTGTGCTCGATTCCTGTGGGCAAGCCGCTGCCAAGACAAACT
TCGGCTTGCCAATGCGAGTAGACTGCATCAAAGTCAGATTGACTGTATGG
CAGGAGCTGCGTTAACCTAGTCGACTTTGTCATCGCTGAGCACTTCTGTA
ACCCATTGGCATTGCTTGGCAAGGGTGAGGTGCTTCGCTACAACGCCAGT
GGGGCTGTGTTGGTGCGTGTGCTTTATCAAGCCTTGCGCAAATTTGTGTG
CAAAGCAGAAGATGGCTCAGGCATAAGTCTCCTCCTTCATCTTACTGTTG
AGAATGATTTAATGTTGCACATCATTGCGTCGCTACACATGAGCTCCTCA
TTAGCTGATGCTCTGTTATTTTCCTGCAGGAGCCTAGAACGCACCATGCT
AGGCCTGCGGCTTTGGCTGCTGGCCCTCTGCTTGCTGGCGATCACAGCGC
TAACAGCGGCAAAGGAGGCCAGGGCGCCCAGCTTATTCGTCCGCTTCCTC
GAGAGGTTCGAGCTGGGGGGGCAGTCGGGGGTCGTGGACAACGGCAGAGT
CGTGGAGGAGGTTCCGCCGCGGCCGCTGCAGGTGTTTGAGTACGGCGCGC
GCACACGCGCGGAGTTCAAGCGCAACAAGGCCAAGTACAAGTACCAGCAC
GTGTGCCTGATGGACGGGGAGGGGGCGGGCGTGTGGCACACGCGGCGCAC
GCCGTGGTTCTGGCGCGGAAACAAGCCGCCGTTCCACGTGCGCATCGTGC
GGCCCAATTTCGTCGGCATGCTGTACTTCCTCATGAGCAACGAGAAGGTG
CGCGTGGACTGGGTGGAGGAGGAAGTGGAGATGCCTGACGGCACTAAGAA
GAAGTGCCTCAAGCACAAGATCGTTCCTCTGTAGGGAGAGTGGGGGCGAA
GGCGCGGGGCAGCCTGTGGCATGCGTTTGTGCCACAGGCTTTACATTAAT
CATGATCAGTGCAGCTCTTACA
back to top

Coding sequence (CDS) from alignment at Contig_6:627396..628617+

>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Trimin1|79212|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_6:627396..628617+ (Tribonema minus UTEX_B_3156 )
ATGCTAGGCCTGCGGCTTTGGCTGCTGGCCCTCTGCTTGCTGGCGATCAC
AGCGCTAACAGCGGCAAAGGAGGCCAGGGCGCCCAGCTTATTCGTCCGCT
TCCTCGAGAGGTTCGAGCTGGGGGGGCAGTCGGGGGTCGTGGACAACGGC
AGAGTCGTGGAGGAGGTTCCGCCGCGGCCGCTGCAGGTGTTTGAGTACGG
CGCGCGCACACGCGCGGAGTTCAAGCGCAACAAGGCCAAGTACAAGTACC
AGCACGTGTGCCTGATGGACGGGGAGGGGGCGGGCGTGTGGCACACGCGG
CGCACGCCGTGGTTCTGGCGCGGAAACAAGCCGCCGTTCCACGTGCGCAT
CGTGCGGCCCAATTTCGTCGGCATGCTGTACTTCCTCATGAGCAACGAGA
AGGTGCGCGTGGACTGGGTGGAGGAGGAAGTGGAGATGCCTGACGGCACT
AAGAAGAAGTGCCTCAAGCACAAGATCGTTCCTCTGTAG
back to top