mRNA_2102 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158619
Unique NamemRNA_2102
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158619 vs. uniprot
Match: A0A835YS03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS03_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.370e-32
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:    1 MERHFPQTIDGQVELLDFLERHTSHALPSLPSTVGSWMALTSLNFSNCRHLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLDLSIMXXXXXXXXXXXXXXXXXXXXXLSCCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIFHEAGCTDKVKQHLASLKFTRN 771
            MERHFPQTIDGQVELLDFLERHTSHALPSLPSTVGSWMALTSLNFSNCRHLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLDLSIMXXXXXXXXXXXXXXXXXXXXXLSCCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIFHEAGCTDKVKQHLASLKFTRN
Sbjct:    1 MERHFPQTIDGQVELLDFLERHTSHALPSLPSTVGSWMALTSLNFSNCRHLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLDLSIMXXXXXXXXXXXXXXXXXXXXXLSCCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEIFHEAGCTDKVKQHLASLKFTRN 257
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158619 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS03_9STRA1.370e-32100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:618359..619201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158619|e_gw1.6.106.1
Hectar predicted targeting categoryother localisation
TranscriptId158941
TrackFilteredModels1
ProteinId158619
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158619gene_2102Tribonema minus UTEX_B_3156 geneContig_6 618359..619201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158619Trimin1|158619|e_gw1.6.106.1Tribonema minus UTEX_B_3156 polypeptideContig_6 618359..619201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2102_2exon_2102_2Tribonema minus UTEX_B_3156 exonContig_6 618359..618848 -
exon_2102_1exon_2102_1Tribonema minus UTEX_B_3156 exonContig_6 618918..619201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2102CDS_2102Tribonema minus UTEX_B_3156 CDSContig_6 618918..619201 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Trimin1|158619|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_6:618359..619201- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGGCATTTTCCTCAGACAATCGATGGTCAGGTTGAGTTATTGGA
CTTCCTGGAACGGCACACGAGTCACGCACTCCCCAGCCTGCCCAGTACTG
TTGGCAGCTGGATGGCGCTGACATCCCTCAACTTCAGCAATTGTCGTCAT
CTCACTTGCCTGCCGGAATCAGTCAGTGGCTGGATTTCGCTGAAACGGCT
TACTATGCGCAATTGTCATGCGCTCACCGATTTGCCGGCGTCAGCCGGCT
GCTGGGCGGCTTTGACGCAGCTTGACTTGAGCATCATGTGCAGTGCGCTC
ACTGACCTGCCTGAGTCAGTTGGCGGCTGGGCAAGACTGACCGAACTTGA
CTTGAGCTGCTGTCATGCGCTCCCCGGCCTGCCAAAGTCTGTTGGAGGCT
GGGTATCGTTACGTGAGCTCAGCTTGCATGAGTGTCGTGCGCTCACCAGC
CTGCCGGACTCAGTCGGCGGCTGGGCAGTACTGACGAAGCTCAACATGTC
AGGCTGCAATGCACTTACCGGTCTGCCAGAGTCAGTTGGCAGCTGGGAGT
TGTTGGCGCAGCTAAATCTGCAAGGCTGCTCTGCACTTGTTGATGTGCCC
AAGTCGGTAGGCAGCTGGGTGGCGCTGCATGAGCTCGACTTGCGAGATTG
CTGTGCACTCAAATGCCTGCCCGACAGCATTTGTGGATGGACTTCTCTAG
AGATCTTTCATGAGGCAGGTTGCACTGACAAGGTCAAGCAGCACCTTGCA
TCGCTGAAGTTCACGCGTAATTAG
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protein sequence of jgi.p|Trimin1|158619

>Trimin1|158619|e_gw1.6.106.1 ID=Trimin1|158619|e_gw1.6.106.1|Name=jgi.p|Trimin1|158619|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
MERHFPQTIDGQVELLDFLERHTSHALPSLPSTVGSWMALTSLNFSNCRH
LTCLPESVSGWISLKRLTMRNCHALTDLPASAGCWAALTQLDLSIMCSAL
TDLPESVGGWARLTELDLSCCHALPGLPKSVGGWVSLRELSLHECRALTS
LPDSVGGWAVLTKLNMSGCNALTGLPESVGSWELLAQLNLQGCSALVDVP
KSVGSWVALHELDLRDCCALKCLPDSICGWTSLEIFHEAGCTDKVKQHLA
SLKFTRN*
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mRNA from alignment at Contig_6:618359..619201-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Trimin1|158619|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_6:618359..619201- (Tribonema minus UTEX_B_3156 )
ATGGAGCGGCATTTTCCTCAGACAATCGATGGTCAGGTTGAGTTATTGGA
CTTCCTGGAACGGCACACGAGTCACGCACTCCCCAGCCTGCCCAGTACTG
TTGGCAGCTGGATGGCGCTGACATCCCTCAACTTCAGCAATTGTCGTCAT
CTCACTTGCCTGCCGGAATCAGTCAGTGGCTGGATTTCGCTGAAACGGCT
TACTATGCGCAATTGTCATGCGCTCACCGATTTGCCGGCGTCAGCCGGCT
GCTGGGCGGCTTTGACGCAGCTTGACTTGAGCATGTGTAAGACGCTGACG
AGCCTGTCAGTGTCAGTGAACGGCTGAACGGCGCTGACGCAGCTCAATTT
GAGCATGTGCAGTGCGCTCACTGACCTGCCTGAGTCAGTTGGCGGCTGGG
CAAGACTGACCGAACTTGACTTGAGCTGCTGTCATGCGCTCCCCGGCCTG
CCAAAGTCTGTTGGAGGCTGGGTATCGTTACGTGAGCTCAGCTTGCATGA
GTGTCGTGCGCTCACCAGCCTGCCGGACTCAGTCGGCGGCTGGGCAGTAC
TGACGAAGCTCAACATGTCAGGCTGCAATGCACTTACCGGTCTGCCAGAG
TCAGTTGGCAGCTGGGAGTTGTTGGCGCAGCTAAATCTGCAAGGCTGCTC
TGCACTTGTTGATGTGCCCAAGTCGGTAGGCAGCTGGGTGGCGCTGCATG
AGCTCGACTTGCGAGATTGCTGTGCACTCAAATGCCTGCCCGACAGCATT
TGTGGATGGACTTCTCTAGAGATCTTTCATGAGGCAGGTTGCACTGACAA
GGTCAAGCAGCACCTTGCATCGCTGAAGTTCACGCGTAATTAG
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Coding sequence (CDS) from alignment at Contig_6:618359..619201-

>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Trimin1|158619|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_6:618359..619201- (Tribonema minus UTEX_B_3156 )
ATGGAGCGGCATTTTCCTCAGACAATCGATGGTCAGGTTGAGTTATTGGA
CTTCCTGGAACGGCACACGAGTCACGCACTCCCCAGCCTGCCCAGTACTG
TTGGCAGCTGGATGGCGCTGACATCCCTCAACTTCAGCAATTGTCGTCAT
CTCACTTGCCTGCCGGAATCAGTCAGTGGCTGGATTTCGCTGAAACGGCT
TACTATGCGCAATTGTCATGCGCTCACCGATTTGCCGGCGTCAGCCGGCT
GCTGGGCGGCTTTGACGCAGCTTGACTTGAGCATCATGTGCAGTGCGCTC
ACTGACCTGCCTGAGTCAGTTGGCGGCTGGGCAAGACTGACCGAACTTGA
CTTGAGCTGCTGTCATGCGCTCCCCGGCCTGCCAAAGTCTGTTGGAGGCT
GGGTATCGTTACGTGAGCTCAGCTTGCATGAGTGTCGTGCGCTCACCAGC
CTGCCGGACTCAGTCGGCGGCTGGGCAGTACTGACGAAGCTCAACATGTC
AGGCTGCAATGCACTTACCGGTCTGCCAGAGTCAGTTGGCAGCTGGGAGT
TGTTGGCGCAGCTAAATCTGCAAGGCTGCTCTGCACTTGTTGATGTGCCC
AAGTCGGTAGGCAGCTGGGTGGCGCTGCATGAGCTCGACTTGCGAGATTG
CTGTGCACTCAAATGCCTGCCCGACAGCATTTGTGGATGGACTTCTCTAG
AGATCTTTCATGAGGCAGGTTGCACTGACAAGGTCAAGCAGCACCTTGCA
TCGCTGAAGTTCACGCGTAATTAG
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