mRNA_2097 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155390
Unique NamemRNA_2097
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155390 vs. uniprot
Match: A0A835YNK1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.910e-37
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 
Query:    1 ERHGFGTQLFADSTIYIGEWHRGRRQGFGTLSSADDSDSYSGEWVEDLAHXXXXXXXXXXXXXXXXXXXXXXXXXXLYATALGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARNVRAEGSWDRDLR 423
            ERHGFGTQLFADSTIYIGEWHRGRRQGFGTLSSADDSDSYSGEWVEDLAHXXXXXXXXXXXXXXXXXXXXXXXXXXLYATALGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARNVRAEGSWDRDLR
Sbjct:    1 ERHGFGTQLFADSTIYIGEWHRGRRQGFGTLSSADDSDSYSGEWVEDLAHXXXXXXXXXXXXXXXXXXXXXXXXXXLYATALGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARNVRAEGSWDRDLR 141
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BLAST of jgi.p|Trimin1|155390 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.310e-5
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    4 RHGFGTQLFADSTIYIGEWHRGRRQGFGTL 93
            RHG G   +AD T+Y GEWHRG+RQGFGTL
Sbjct: 2888 RHGVGEYRYADGTVYSGEWHRGQRQGFGTL 2917
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YNK1_9STRA1.910e-37100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FQA7_ECTSI3.310e-570.00Hypothetical leucine rich repeat and MORN domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:533748..534724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155390|gw1.6.341.1
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
KEGG rclassRC00002
KEGG ReactionR00127,R01547,R11319
KEGG ModuleM00049
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG koko:K00939,ko:K10314
EC2.7.4.3
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Preferred nameFBXO39
DescriptionF-box LRR-repeat protein
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
Evalue5.43e-06
Seed ortholog2880.D7FQA7
Hectar predicted targeting categoryother localisation
TranscriptId155712
TrackFilteredModels1
ProteinId155390
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155390gene_2097Tribonema minus UTEX_B_3156 geneContig_6 533748..534724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155390Trimin1|155390|gw1.6.341.1Tribonema minus UTEX_B_3156 polypeptideContig_6 533748..534724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2097_2exon_2097_2Tribonema minus UTEX_B_3156 exonContig_6 533748..533889 -
exon_2097_1exon_2097_1Tribonema minus UTEX_B_3156 exonContig_6 534444..534724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2097CDS_2097Tribonema minus UTEX_B_3156 CDSContig_6 534444..534724 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Trimin1|155390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_6:533748..534724- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAACGACATGGCTTTGGAACACAGCTCTTCGCAGACAGCACAATCTACAT
CGGCGAGTGGCACCGCGGCCGCCGCCAGGGCTTCGGCACCCTCTCCTCCG
CCGACGACTCAGACTCGTACTCGGGGGAGTGGGTCGAGGACTTGGCGCAT
GGGGAGGGGGAGTGGCGGTGGGGGGATGGCAGCATGTATGTGGGTGAGGC
CAGGAGGGGGGTGCGCGAGGGGACGGGGCTGTACGCGACAGCGCTCGGCG
ATGTGTACTACGGGGAGTTCAAGGACAACAGGTTCGACGGCGCAGGAACG
TTCCGGTACAGCGACGGAAGCACGTTCCGCGGCGCGTTCCTCGAGGGACT
GCGCCACGGCGCCGGCGTCCACGCCGACGCGCGGAACGTGCGCGCGGAAG
GTTCCTGGGATCGCGACCTGCGC
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protein sequence of jgi.p|Trimin1|155390

>Trimin1|155390|gw1.6.341.1 ID=Trimin1|155390|gw1.6.341.1|Name=jgi.p|Trimin1|155390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
ERHGFGTQLFADSTIYIGEWHRGRRQGFGTLSSADDSDSYSGEWVEDLAH
GEGEWRWGDGSMYVGEARRGVREGTGLYATALGDVYYGEFKDNRFDGAGT
FRYSDGSTFRGAFLEGLRHGAGVHADARNVRAEGSWDRDLR
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mRNA from alignment at Contig_6:533748..534724-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Trimin1|155390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=977bp|location=Sequence derived from alignment at Contig_6:533748..534724- (Tribonema minus UTEX_B_3156 )
GAACGACATGGCTTTGGAACACAGCTCTTCGCAGACAGCACAATCTACAT
CGGCGAGTGGCACCGCGGCCGCCGCCAGGGCTTCGGCACCCTCTCCTCCG
CCGACGACTCAGACTCGTACTCGGGGGAGTGGGTCGAGGACTTGGCGCAT
GGGGAGGGGGAGTGGCGGTGGGGGGATGGCAGCATGTATGTGGGTGAGGC
CAGGAGGGGGGTGCGCGAGGGGACGGGGCTGTACGCGACAGCGCTCGGCG
ATGTGTACTACGGGGAGTTCAAGGACAACAGGTGAGGGCAGGGGGGGGGG
GCAGGGGGGCGGGGGTATTTGAAGAAACGATTCAAGAGATTGCGGAGCTC
TAGGTGACAAGGAGTGGTTAGCCGCTAGCGCCTTCTACCAGCAACTGTGA
TCGCCGCTGCTGCAGCAATTGGCCACAAGTCAAACATTCATGTTCTGTGT
GTTCAAGTTGGCGTTGTGCTAATGCAATCGGCCATGTGTGATTCTCGTGC
GAGGCGCACTTTCGGGAGGGGGGGGGGGGGGGGGGGGCTATGTAGGCGCT
GCACTGGTGCCGAAGTGCTGATGTTTTCTCAGCGCGCACATAAGCTCATA
GGGCAAATAATGTGCTGGAGGGATGGACGTCCTGCCATACTCCATGCTAC
TTTTACAGTACCCCCTCGAACATGCACCGCACTGCAAACTGCACAATTAT
ACTGCGCGAAGCTCGGAGAGGCGCGGTGTGTGCATGCACCGCCACCTCCG
CTTGCCGCTACTTGACTCCACCTCCTGACTCTGACTCTACGACCCTCATC
CCTTGACACTGCACCCACGATGAGTCCTCTCACAGGTTCGACGGCGCAGG
AACGTTCCGGTACAGCGACGGAAGCACGTTCCGCGGCGCGTTCCTCGAGG
GACTGCGCCACGGCGCCGGCGTCCACGCCGACGCGCGGAACGTGCGCGCG
GAAGGTTCCTGGGATCGCGACCTGCGC
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Coding sequence (CDS) from alignment at Contig_6:533748..534724-

>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Trimin1|155390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_6:533748..534724- (Tribonema minus UTEX_B_3156 )
GAACGACATGGCTTTGGAACACAGCTCTTCGCAGACAGCACAATCTACAT
CGGCGAGTGGCACCGCGGCCGCCGCCAGGGCTTCGGCACCCTCTCCTCCG
CCGACGACTCAGACTCGTACTCGGGGGAGTGGGTCGAGGACTTGGCGCAT
GGGGAGGGGGAGTGGCGGTGGGGGGATGGCAGCATGTATGTGGGTGAGGC
CAGGAGGGGGGTGCGCGAGGGGACGGGGCTGTACGCGACAGCGCTCGGCG
ATGTGTACTACGGGGAGTTCAAGGACAACAGGTTCGACGGCGCAGGAACG
TTCCGGTACAGCGACGGAAGCACGTTCCGCGGCGCGTTCCTCGAGGGACT
GCGCCACGGCGCCGGCGTCCACGCCGACGCGCGGAACGTGCGCGCGGAAG
GTTCCTGGGATCGCGACCTGCGC
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