mRNA_2038 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158732
Unique NamemRNA_2038
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A835YXN5_9STRA (Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.850e-68
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MCVFSALFVSPGKQEGEQATQPVSATRDSLLNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            MCVFSALFVSPGKQEGEQATQPVSATRDSLLNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF
Sbjct:    1 MCVFSALFVSPGKQEGEQATQPVSATRDSLLNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 103
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A7C3HGS1_9BACT (30S ribosomal protein S8 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3HGS1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 9.490e-10
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  127 PKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            P I  LK ISKP + +Y S+  +     +LG+ IL+TS G+++HK AL +++GG+ LCY++
Sbjct:   72 PAITGLKRISKPGRRVYVSADKVPRVMNNLGIAILSTSRGVITHKQALREHIGGEVLCYVW 132
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BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: UPI001A14384A (30S ribosomal protein S8 n=1 Tax=Rickettsia sp. TaxID=789 RepID=UPI001A14384A)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-9
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   85 SLLNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            ++LN+     + S P I  +  +SKPS+  Y S   +  F   LG+ IL+TS G++SHK A + N+GG+ LC +F
Sbjct:   56 NILNIKLKYTKNSSPVIKEISRVSKPSRRFYTSVNKIRNFYNGLGIQILSTSKGVLSHKDAKALNVGGEILCKVF 130
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A1F5S3K3_9BACT (30S ribosomal protein S8 n=1 Tax=Candidatus Falkowbacteria bacterium RBG_13_39_14 TaxID=1797985 RepID=A0A1F5S3K3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-8
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  127 PKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            P +  LK +SKPS+ IY S ++L     + G+ I++TS GIMS+K A  K +GG+ +C ++
Sbjct:   70 PSVTVLKRVSKPSRRIYVSKENLPTVLNNFGIAIISTSQGIMSNKEAKKKGIGGEVICEVY 130
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A2E9UCM1_9CHLR (30S ribosomal protein S8 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E9UCM1_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-8
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   37 KQEGEQATQPVSATRDSL--LNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            K+EG      V  T D +  LNLN +      P+I  LK ISKP   IY    ++  +   LG+ I++TS GIM+HK A  ++LGG+ +C I+
Sbjct:   40 KEEGFITNYQVE-TEDRMKNLNLNLSYKPEGTPQINGLKRISKPGLRIYSRKGEIPRYYGDLGVTIVSTSKGIMTHKQAWKESLGGEVICVIW 131
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A2E7VTM9_9CHLR (30S ribosomal protein S8 n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E7VTM9_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 2.870e-8
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   91 LNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            +NLN +      P+I  L+ ISKP   +Y    ++  +   LG+ I++TS+GIMSHK A    LGG+ +C ++
Sbjct:   59 INLNLSYKNEGTPRINGLRRISKPGLRVYSRKGEIPRYFGGLGVTIVSTSNGIMSHKEAWKNRLGGEVMCVVW 131
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A6YEC2_CHLAT (Ribosomal protein S8 n=1 Tax=Chlorokybus atmophyticus TaxID=3144 RepID=A6YEC2_CHLAT)

HSP 1 Score: 56.6 bits (135), Expect = 4.940e-8
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  127 PKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            P I  +K IS+PS  +Y SS ++ ++ R +G+I+L+T +GI S   A  + LGG+ LC +F
Sbjct:   64 PVINKIKRISRPSNRVYLSSNNISLYKRGVGIILLSTRNGIYSDIDARLQGLGGEILCQVF 124
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A7C6ESS8_9BACT (30S ribosomal protein S8 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6ESS8_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 5.810e-8
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  127 PKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            P I  LK +SKP + IY     +     +LG+ IL+TS GI++HK AL  ++GG+ +CY++
Sbjct:   72 PAITGLKRVSKPGRKIYVGVDKMPRVMNNLGIAILSTSKGIVTHKQALRDHVGGEIICYVW 132
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A536C2L7_9CHLR (30S ribosomal protein S8 n=15 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A536C2L7_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 8.180e-8
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   37 KQEGEQATQPVSATRDSL-LNLNFTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            K+EG  A+  V+A      L++ F         +  L+ ISKP   +Y    ++      LG++IL+TSHG+MS + A    LGG+ +CY++
Sbjct:   41 KEEGYIASYDVAAAEQGQKLDITFKPKSPRGKSLAGLRRISKPGLRVYARKTEIPRVLGGLGIVILSTSHGVMSGQKATKAGLGGEVVCYVW 132
[Close]
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Match: A0A661J8R1_9DELT (30S ribosomal protein S8 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661J8R1_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 8.180e-8
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  103 FTSFQVSDPKILSLKHISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALCYIF 309
            F  +  +   I+ LK +SKPS+ +Y S  ++      LG+ IL+TS GI++ K A   N+GG+ LC ++
Sbjct:   64 FLKYDSNKQGIIHLKRVSKPSRRVYVSKDEIPFVKNGLGIAILSTSKGILTDKMARKANVGGEILCEVW 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXN5_9STRA3.850e-68100.00Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID... [more]
A0A7C3HGS1_9BACT9.490e-1042.6230S ribosomal protein S8 n=1 Tax=Bacteroidetes bac... [more]
UPI001A14384A1.280e-938.6730S ribosomal protein S8 n=1 Tax=Rickettsia sp. Ta... [more]
A0A1F5S3K3_9BACT1.010e-840.9830S ribosomal protein S8 n=1 Tax=Candidatus Falkow... [more]
A0A2E9UCM1_9CHLR1.030e-838.7130S ribosomal protein S8 n=1 Tax=Chloroflexi bacte... [more]
A0A2E7VTM9_9CHLR2.870e-836.9930S ribosomal protein S8 n=2 Tax=Chloroflexi bacte... [more]
A6YEC2_CHLAT4.940e-840.98Ribosomal protein S8 n=1 Tax=Chlorokybus atmophyti... [more]
A0A7C6ESS8_9BACT5.810e-840.9830S ribosomal protein S8 n=1 Tax=bacterium TaxID=1... [more]
A0A536C2L7_9CHLR8.180e-832.6130S ribosomal protein S8 n=15 Tax=unclassified Chl... [more]
A0A661J8R1_9DELT8.180e-836.2330S ribosomal protein S8 n=1 Tax=Deltaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:51809..52120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158732|e_gw1.6.337.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02994
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Preferred namerpsH
DescriptionOne of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
COG categoryJ
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0096@1|root,COG0096@2|Bacteria,1RDG3@1224|Proteobacteria,2U6ZH@28211|Alphaproteobacteria,43XNT@69657|Hyphomonadaceae
Evalue2.15e-10
Seed ortholog1280950.HJO_17094
Hectar predicted targeting categoryother localisation
TranscriptId159054
TrackFilteredModels1
ProteinId158732
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158732gene_2038Tribonema minus UTEX_B_3156 geneContig_6 51809..52120 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2038_1exon_2038_1Tribonema minus UTEX_B_3156 exonContig_6 51809..52120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2038CDS_2038Tribonema minus UTEX_B_3156 CDSContig_6 51809..52120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158732Trimin1|158732|e_gw1.6.337.1Tribonema minus UTEX_B_3156 polypeptideContig_6 51809..52120 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Trimin1|158732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_6:51809..52120- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTGTTTTCTGCCCTGTTTGTCTCTCCCGGCAAGCAAGAGGGGGA
ACAAGCCACACAGCCAGTCAGTGCCACCAGAGATTCGTTGTTGAACTTGA
ACTTCACTTCATTTCAAGTGAGTGACCCTAAAATTTTAAGTTTAAAACAT
ATTAGCAAGCCAAGCAAAAATATTTATTTTTCTTCCCAAGATTTGTGGAT
ATTTGATCGTAGCTTGGGTTTGATTATCTTAAATACTTCACACGGTATAA
TGTCACATAAAACCGCGCTGTCTAAAAATTTAGGTGGTCAAGCTTTGTGT
TATATTTTTTAA
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protein sequence of jgi.p|Trimin1|158732

>Trimin1|158732|e_gw1.6.337.1 ID=Trimin1|158732|e_gw1.6.337.1|Name=jgi.p|Trimin1|158732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
MCVFSALFVSPGKQEGEQATQPVSATRDSLLNLNFTSFQVSDPKILSLKH
ISKPSKNIYFSSQDLWIFDRSLGLIILNTSHGIMSHKTALSKNLGGQALC
YIF*
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mRNA from alignment at Contig_6:51809..52120-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Trimin1|158732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_6:51809..52120- (Tribonema minus UTEX_B_3156 )
ATGTGTGTGTTTTCTGCCCTGTTTGTCTCTCCCGGCAAGCAAGAGGGGGA
ACAAGCCACACAGCCAGTCAGTGCCACCAGAGATTCGTTGTTGAACTTGA
ACTTCACTTCATTTCAAGTGAGTGACCCTAAAATTTTAAGTTTAAAACAT
ATTAGCAAGCCAAGCAAAAATATTTATTTTTCTTCCCAAGATTTGTGGAT
ATTTGATCGTAGCTTGGGTTTGATTATCTTAAATACTTCACACGGTATAA
TGTCACATAAAACCGCGCTGTCTAAAAATTTAGGTGGTCAAGCTTTGTGT
TATATTTTTTAA
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Coding sequence (CDS) from alignment at Contig_6:51809..52120-

>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Trimin1|158732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_6:51809..52120- (Tribonema minus UTEX_B_3156 )
ATGTGTGTGTTTTCTGCCCTGTTTGTCTCTCCCGGCAAGCAAGAGGGGGA
ACAAGCCACACAGCCAGTCAGTGCCACCAGAGATTCGTTGTTGAACTTGA
ACTTCACTTCATTTCAAGTGAGTGACCCTAAAATTTTAAGTTTAAAACAT
ATTAGCAAGCCAAGCAAAAATATTTATTTTTCTTCCCAAGATTTGTGGAT
ATTTGATCGTAGCTTGGGTTTGATTATCTTAAATACTTCACACGGTATAA
TGTCACATAAAACCGCGCTGTCTAAAAATTTAGGTGGTCAAGCTTTGTGT
TATATTTTTTAA
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