mRNA_2003 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163445
Unique NamemRNA_2003
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A835Z1Y6_9STRA (Proton_antipo_M domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y6_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.770e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALLMLTCRDGVNRTHLISSQACAKRFSCCAVKPAPFQARRPLSSRTQVCA 228
            GAVGGSAQLGLHTWLPDAVEGPTPVSALLMLTCRDGVNRTHLISSQACAKRFSCCAVKPAPFQARRPLSSRTQVCA
Sbjct:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALLMLTCRDGVNRTHLISSQACAKRFSCCAVKPAPFQARRPLSSRTQVCA 76
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A3D3IWA2_9PROT (NADH-quinone oxidoreductase subunit L (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D3IWA2_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 6.400e-9
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GAVG SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   53 GAVGKSAQLGLHTWLPDAMEGPTPVSALI 81
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A227JNU6_9CAUL (Proton_antipo_M domain-containing protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A227JNU6_9CAUL)

HSP 1 Score: 55.5 bits (132), Expect = 8.870e-9
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GA G SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:    5 GATGKSAQLGLHTWLPDAMEGPTPVSALI 33
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: F8QZH8_9STRA (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Navicula minima TaxID=97222 RepID=F8QZH8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.560e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GAVG SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   39 GAVGKSAQLGLHTWLPDAMEGPTPVSALI 67
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A5J9ULM2_9POAL (Proton_antipo_M domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9ULM2_9POAL)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GAVG SAQ+GLHTWLPDA+EGPTPVSAL+
Sbjct:   54 GAVGKSAQIGLHTWLPDAMEGPTPVSALI 82
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BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A6C0MB77_9EUKA (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Acanthamoeba sp. TaxID=5756 RepID=A0A6C0MB77_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 4.260e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GAVG SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   55 GAVGKSAQLGLHTWLPDAMEGPTPVSALI 83
[Close]
BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A6C0M8U2_9EUKA (NADH dehydrogenase subunit 5 (Fragment) n=3 Tax=Acanthamoeba TaxID=5754 RepID=A0A6C0M8U2_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 4.320e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GAVG SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   56 GAVGKSAQLGLHTWLPDAMEGPTPVSALI 84
[Close]
BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A6C0MA52_9EUKA (NADH dehydrogenase subunit 5 (Fragment) n=13 Tax=Acanthamoeba TaxID=5754 RepID=A0A6C0MA52_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 6.040e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GA+G SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   56 GAIGKSAQLGLHTWLPDAMEGPTPVSALI 84
[Close]
BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A6C0M9J9_9EUKA (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Acanthamoeba hatchetti TaxID=65660 RepID=A0A6C0M9J9_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 6.040e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GA+G SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   56 GAIGKSAQLGLHTWLPDAMEGPTPVSALI 84
[Close]
BLAST of jgi.p|Trimin1|163445 vs. uniprot
Match: A0A6C0MBW1_9EUKA (NADH dehydrogenase subunit 5 (Fragment) n=2 Tax=Acanthamoeba TaxID=5754 RepID=A0A6C0MBW1_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 6.040e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 GAVGGSAQLGLHTWLPDAVEGPTPVSALL 87
            GA+G SAQLGLHTWLPDA+EGPTPVSAL+
Sbjct:   56 GAIGKSAQLGLHTWLPDAMEGPTPVSALI 84
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163445 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1Y6_9STRA3.770e-49100.00Proton_antipo_M domain-containing protein n=1 Tax=... [more]
A0A3D3IWA2_9PROT6.400e-989.66NADH-quinone oxidoreductase subunit L (Fragment) n... [more]
A0A227JNU6_9CAUL8.870e-986.21Proton_antipo_M domain-containing protein n=1 Tax=... [more]
F8QZH8_9STRA2.560e-889.66NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Na... [more]
A0A5J9ULM2_9POAL3.470e-886.21Proton_antipo_M domain-containing protein (Fragmen... [more]
A0A6C0MB77_9EUKA4.260e-889.66NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Ac... [more]
A0A6C0M8U2_9EUKA4.320e-889.66NADH dehydrogenase subunit 5 (Fragment) n=3 Tax=Ac... [more]
A0A6C0MA52_9EUKA6.040e-886.21NADH dehydrogenase subunit 5 (Fragment) n=13 Tax=A... [more]
A0A6C0M9J9_9EUKA6.040e-886.21NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Ac... [more]
A0A6C0MBW1_9EUKA6.040e-886.21NADH dehydrogenase subunit 5 (Fragment) n=2 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:891025..891255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163445|e_gw1.26.96.1
KEGG TC3.D.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00061
KEGG ReactionR11945
KEGG ModuleM00144
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG koko:K00341
EC1.6.5.3
Preferred namenuoL
DescriptionNADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
COG categoryCP
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG1009@1|root,COG1009@2|Bacteria,1MW2M@1224|Proteobacteria,2TQSS@28211|Alphaproteobacteria,4BPGG@82117|unclassified Alphaproteobacteria
Evalue1.85e-08
Seed ortholog856793.MICA_1353
Hectar predicted targeting categoryother localisation
TranscriptId163767
TrackFilteredModels1
ProteinId163445
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163445gene_2003Tribonema minus UTEX_B_3156 geneContig_26 891025..891255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2003_1exon_2003_1Tribonema minus UTEX_B_3156 exonContig_26 891025..891255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2003CDS_2003Tribonema minus UTEX_B_3156 CDSContig_26 891025..891255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163445Trimin1|163445|e_gw1.26.96.1Tribonema minus UTEX_B_3156 polypeptideContig_26 891025..891255 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Trimin1|163445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_26:891025..891255- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTGCTGTTGGTGGATCAGCCCAACTTGGCTTGCACACATGGCTCCCTGA
CGCAGTAGAAGGGCCAACACCAGTATCTGCACTGCTGATGCTGACCTGCC
GTGACGGGGTCAATAGGACCCACTTAATTTCATCACAAGCCTGTGCAAAA
AGGTTCAGTTGTTGTGCTGTGAAGCCTGCTCCTTTTCAGGCCAGGAGGCC
ACTGAGTTCACGCACACAAGTGTGTGCGTAA
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protein sequence of jgi.p|Trimin1|163445

>Trimin1|163445|e_gw1.26.96.1 ID=Trimin1|163445|e_gw1.26.96.1|Name=jgi.p|Trimin1|163445|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
GAVGGSAQLGLHTWLPDAVEGPTPVSALLMLTCRDGVNRTHLISSQACAK
RFSCCAVKPAPFQARRPLSSRTQVCA*
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mRNA from alignment at Contig_26:891025..891255-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Trimin1|163445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_26:891025..891255- (Tribonema minus UTEX_B_3156 )
GGTGCTGTTGGTGGATCAGCCCAACTTGGCTTGCACACATGGCTCCCTGA
CGCAGTAGAAGGGCCAACACCAGTATCTGCACTGCTGATGCTGACCTGCC
GTGACGGGGTCAATAGGACCCACTTAATTTCATCACAAGCCTGTGCAAAA
AGGTTCAGTTGTTGTGCTGTGAAGCCTGCTCCTTTTCAGGCCAGGAGGCC
ACTGAGTTCACGCACACAAGTGTGTGCGTAA
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Coding sequence (CDS) from alignment at Contig_26:891025..891255-

>mRNA_2003 ID=mRNA_2003|Name=jgi.p|Trimin1|163445|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_26:891025..891255- (Tribonema minus UTEX_B_3156 )
GGTGCTGTTGGTGGATCAGCCCAACTTGGCTTGCACACATGGCTCCCTGA
CGCAGTAGAAGGGCCAACACCAGTATCTGCACTGCTGATGCTGACCTGCC
GTGACGGGGTCAATAGGACCCACTTAATTTCATCACAAGCCTGTGCAAAA
AGGTTCAGTTGTTGTGCTGTGAAGCCTGCTCCTTTTCAGGCCAGGAGGCC
ACTGAGTTCACGCACACAAGTGTGTGCGTAA
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