mRNA_1989 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|50557
Unique NamemRNA_1989
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|50557 vs. uniprot
Match: A0A836CG93_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG93_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.180e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:  145 MLKLHPWNISAHAPFLIIVLLMVLVSCLLSMHSVLCLSSPCNLLPGHDVYHVQGMDWRQTCTALAQLSTEQQPAKDAASTQHAWHGSAPNSYSDSQ 432
            MLKLHPWNISAHAPFLIIVLLMVLVSCLLSMHSVLCLSSPCNLLPGHDVYHVQGMDWRQTCTALAQLSTEQQPAKDAASTQHAWHGSAPNSYSDSQ
Sbjct:    1 MLKLHPWNISAHAPFLIIVLLMVLVSCLLSMHSVLCLSSPCNLLPGHDVYHVQGMDWRQTCTALAQLSTEQQPAKDAASTQHAWHGSAPNSYSDSQ 96
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BLAST of jgi.p|Trimin1|50557 vs. uniprot
Match: A0A836CNH9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.380e-29
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:  208 MVLVSCLLSMHSVLCLSSPCNLLPGHDVYHVQGMDWRQTCTALAQLSTEQQPAKDAAST 384
            MVLVSCLLSMH VLCLSSPCNLLPGHDVYHVQGMDWRQTC+ALAQLSTEQQPAKD  S+
Sbjct:    1 MVLVSCLLSMHCVLCLSSPCNLLPGHDVYHVQGMDWRQTCSALAQLSTEQQPAKDGKSS 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|50557 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CG93_9STRA2.180e-61100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNH9_9STRA6.380e-2991.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:722745..725949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|50557|CE50556_16
Hectar predicted targeting categorysignal peptide
TranscriptId50879
TrackFilteredModels1
ProteinId50557
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50557gene_1989Tribonema minus UTEX_B_3156 geneContig_26 722745..725949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1989_2exon_1989_2Tribonema minus UTEX_B_3156 exonContig_26 722745..722895 -
exon_1989_1exon_1989_1Tribonema minus UTEX_B_3156 exonContig_26 725577..725949 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1989UTR3_1989Tribonema minus UTEX_B_3156 three_prime_UTRContig_26 722745..722833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1989CDS_1989Tribonema minus UTEX_B_3156 CDSContig_26 725577..725805 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1989UTR5_1989Tribonema minus UTEX_B_3156 five_prime_UTRContig_26 725806..725949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|50557Trimin1|50557|CE50556_16Tribonema minus UTEX_B_3156 polypeptideContig_26 722834..725805 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Trimin1|50557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=524bp|location=Sequence derived from alignment at Contig_26:722745..725949- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATTTGGTGCTTCAGTGACCGCGACCCGGGCATGTCTAAAAGGTAGTTAG
TTCGTCAGTGGTAAGTTGGTAAGACACCACGTTGAGAGAGGTGGGAAAAT
ATGTCTCTGGAAATTGAGCACGGACTGCTTCGCACACACGCTATATGCTC
AAGCTACACCCATGGAATATAAGTGCACATGCACCATTTCTTATTATTGT
TTTATTGATGGTTTTGGTATCTTGCTTGTTGTCAATGCACAGTGTACTCT
GTCTTTCATCCCCATGCAATCTGCTTCCTGGTCATGACGTGTACCATGTG
CAGGGCATGGACTGGCGTCAAACTTGTACAGCTCTTGCTCAACTGTCAAC
AGAACAACAGCCTGCCAAGGATGCTGCTTCAACGCAACACGCGTGGCATG
GATCGGCGCCAAACTCGTACAGCGACAGCCAGTGAAGACGGTGCACCCCA
CCATGCAGCAGCAGCATCAACAAAGCTACAAAGCTTCTGCTGAAGTGTTG
GTGATGAACTGGACTGCACCAAGA
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protein sequence of jgi.p|Trimin1|50557

>Trimin1|50557|CE50556_16 ID=Trimin1|50557|CE50556_16|Name=jgi.p|Trimin1|50557|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
MLKLHPWNISAHAPFLIIVLLMVLVSCLLSMHSVLCLSSPCNLLPGHDVY
HVQGMDWRQTCTALAQLSTEQQPAKDAASTQHAWHGSAPNSYSDSQ*
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mRNA from alignment at Contig_26:722745..725949-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Trimin1|50557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3205bp|location=Sequence derived from alignment at Contig_26:722745..725949- (Tribonema minus UTEX_B_3156 )
TATTTGGTGCTTCAGTGACCGCGACCCGGGCATGTCTAAAAGGTAGTTAG
TTCGTCAGTGGTAAGTTGGTAAGACACCACGTTGAGAGAGGTGGGAAAAT
ATGTCTCTGGAAATTGAGCACGGACTGCTTCGCACACACGCTATATGCTC
AAGCTACACCCATGGAATATAAGTGCACATGCACCATTTCTTATTATTGT
TTTATTGATGGTTTTGGTATCTTGCTTGTTGTCAATGCACAGTGTACTCT
GTCTTTCATCCCCATGCAATCTGCTTCCTGGTCATGACGTGTACCATGTG
CAGGGCATGGACTGGCGTCAAACTTGTACAGCTCTTGCTCAACTGTCAAC
AGAACAACAGCCTGCCAAGGATGGTGAGAGCTCAACACATGTCATCTATA
TTCTTGAAGTTCCCGAGGCTGGGCCTGTCGAGAAAAGGGTTCATAGAGTG
TAAATAATTGCAGCTCATGATCGAAAGTGAGGCGGAGGTCAGGCTAAGAT
AGATATTCAATTTATCTCTACATGAACAGTCGCCATACTCAGCCTTACAA
CACACACTTGAACTTTGGCACACACTTGAAGTTCCAGAGGCTGGGCCTGT
CGAAAAAAGTATTTCTCAGAGCCTGACCCTAAATGGGGTTGGTACGACGC
TCGCTAGATTTTCGTAACCTGCAAATAAATAGGGCTGCTGATCAGCAGTG
TAGGTGAGATCAGTGTAAGAGAGGTTCCAGCGTCCCCAGCTTTAGCAGAG
GCCATACTAAGGCTTAGAGAGCAAAGTTGAACTTGTGTTTAAATTGAAGT
TCTTGAGGCTGCGCCTGTCGTCACAAAGTGTAAATAATTGTGGCTCATGA
TCAAAAGTGAGGGGGGAGGTCAGGCTAAGAGAGGTTCAATCTATCCCTAC
ATGAGCAGAGGCCATACTAAGCCTTAAAGTTGAACTTGTGTTATAATTGA
AGTGCGCCCGTCGAGAAAAGGGTTCATAGAGTGTAAATAACTGTAGCTCA
TGATCGAAAGTGAGGCGGAGGTCAGGCTAAGATAGATATTCAATTTATCT
CTACATGAGCAGTCGCCATACTCAGCCTTACAACGCACACTTGAACTTTG
GCACACACTTGAAGTTCCAGAGGCTGGGCCTGTCGAAAAAAGTATTTCTC
AGAGCCTGACCCTAAATGGGGCTGGTACAACGCTCGCTAGATTTTCGTAA
CCTGCAAATAAATAGGGCTGCTGATCAGAAGTGTAGGTGAGATCAGTGTA
AGAGAGGTTCCAGCGTCCCCAGCATTAGCAGAGGCCATACTAAGGCTTAG
AGAGCAAAGTTGAACTTGTGTTTAAATTAGAGTTCTTGAGGCTGCGCCTG
TCGTCACAAAGTGTAAATAATTGTAGCTCATGATCGAAAGTGAGGCGGAG
GTCAGGCTAAGATAGATATTCAATTTATCTCTACATGAGCAGTCGCCATA
CTCAGCCTTACAACGCACACTTGAACTTTGGCACACACTTGAAGTTCCAG
AGGCTGGGCCTGTCGAAAAAAGTATTTCTCAGAGCCTGACCCTAAATGGG
GTTGGTACAACGCTCGCTAGATTTTCGTAACCTGCAAATAAATAGGGCTG
CTGATCAGAAGTGTAGGTGAGATCAGTGTAAGAGAGGTTCCAGCGTCCCC
AGCATCAGCAGAGGTCATACTAAGGCTTAGAGAGCAAAGTTGAACTTGTG
TTTAAATTGAAGTTCTTGAGGCTGCGCCTGTCGTCACAAAGTGTAAATAA
TTGTGGCTCATGATTAAAAGTGAGGGGGGAGGTCAGGCTAAGAGAGGTTC
AATCTATCCCTACATGAGCAGAGGCCATACTAAGCCTTAGAGCACAAAGT
TGAACTTGTGTTATTATTGAAGTACGCCCGTCGAGAAAAGGGTTCATAGA
GTGTAAATAACTGTAGCTCATGATCGAAAGTGAGGCGGAGGTCAGGCTAA
GATAGATATTCAATTTATCTCTACATGAGCAGTCGCCATACTCAGCCTTA
CAATGCACACTTGAACTTTGGCACACACTTGAAGTTCCAGAGGCTGGGCC
TGTCGAAAAAAGTATTTTTCAGAGCCTGACCCTAAATGGGGTTGGTACGA
CGCTCGCTAGATTTTCGTAACCTGCAAATAAATAGGGCTGCTGATCAGAA
GTGTAGGTGAGATCAGTGTAAGAGAGGTTCCAGCGTCCCCAGCATTAGCA
GAGGCCATACTAAGGCTTAGAGAGCAAAGTTGAACTCGTGTTTAAATTGA
AGTTCTTGAGGCTGCGCCTGTCGTCACAAATTGTAAATAATTGTGGCTCA
TGATCGAAAGTGAGGGGGGAGGTCAGGCTACGAGAGGTTCAATCTATCCC
TACATGAGCAGAGGCCATACTAAGCCTTACGCACAAAGTAGAACACTTGT
TGAAATTGAAGTGCGCCCGTCGAGAAAAGGGTTCATAGAGTGTAAATAAC
TGTAGCTCATGATCGAAAGTGAGGCGGAGGTCAGGCTAAGATAGGTTCAA
TCTATCCCTACATGAGCAGTCGCCATACTCAGCCTTACAACACACACTTG
AACTTTGGCACACACTTGCAGTTCCAGAGGCTGGGCCTGTCGAAAAAAGT
ATTTCTCAGAGCCTGACCCTAAATGGGGCTGGTACGACGCTCGCTAGATT
TTCGTAACCTGCAAATAATTAGGGCGGCTGATCAGAAGTGTAGGTGAGAT
CAGTGTAAGAGAGCTTCAAGCTTTCCCTACATCAGCAGTTAACATGCTCA
GCCTTACATCACAAACTTGACCTTATGCTGAAACTTGAAGTTCTTAGGGC
TGGGCCTGTTGAGAAAAGAGTTCATAAGAGTGTAAATCATTGTGGATCGA
AAGTGTTGGTGGGGTCAGGCTCAGAGACGTTCAAGCTTCCCCTACATCAG
CCGTCACAATACGCAGCCTTACGGCACACACTTGAACTTTTGTCCACACC
TGAAGTCCCTGAGGCTGGGCCTGTCAAGAAAAGCTGATGTTCAACTCCTC
AAATTCTTCAGCATTTCATGTGTTGATCTTCTCTCATTATCGCATCCATC
ACAGCTGCTTCAACGCAACACGCGTGGCATGGATCGGCGCCAAACTCGTA
CAGCGACAGCCAGTGAAGACGGTGCACCCCACCATGCAGCAGCAGCATCA
ACAAAGCTACAAAGCTTCTGCTGAAGTGTTGGTGATGAACTGGACTGCAC
CAAGA
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Coding sequence (CDS) from alignment at Contig_26:722745..725949-

>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Trimin1|50557|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_26:722745..725949- (Tribonema minus UTEX_B_3156 )
ATGCTCAAGCTACACCCATGGAATATAAGTGCACATGCACCATTTCTTAT
TATTGTTTTATTGATGGTTTTGGTATCTTGCTTGTTGTCAATGCACAGTG
TACTCTGTCTTTCATCCCCATGCAATCTGCTTCCTGGTCATGACGTGTAC
CATGTGCAGGGCATGGACTGGCGTCAAACTTGTACAGCTCTTGCTCAACT
GTCAACAGAACAACAGCCTGCCAAGGATGCTGCTTCAACGCAACACGCGT
GGCATGGATCGGCGCCAAACTCGTACAGCGACAGCCAGTGA
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