mRNA_197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135642
Unique NamemRNA_197
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A836CE14_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE14_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.300e-87
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI
Sbjct:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 129          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A835ZA78_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA78_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.490e-43
Identity = 67/129 (51.94%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            P+ELH++S GG+LM A  I+D I R+PVPVHS ++G+AASA TLM+VVC+ RYA+PNSLML+HQ+SGGAEG  A V + V  M  +  + K +Y  HT +   +L+E++ HD+W ++  C+ KGI+D I
Sbjct:   59 PIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGI 187          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A835Z7B6_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.110e-41
Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    4 VELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            +ELH+QS GGALMP   +VD ICR+PVP+ SF++G+AASAATL++V CA RYA+ NS+ML+HQ+SGGA G  A +  +V  M     +++N+YL  T +   +++E++  D W +A  C+ KGI+DEI
Sbjct:  117 IELHIQSQGGALMPTFGLVDYICRNPVPIDSFIDGYAASAATLISVSCAKRYAYRNSIMLLHQLSGGASGKFADIEQQVSNMDLFMSMIRNIYLDRTAMNRSEIDEVLATDEWFSARVCLEKGIIDEI 244          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A836CPU9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.240e-36
Identity = 58/128 (45.31%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    4 VELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            +ELH+QS GG+L+P   +VD ICR+ VPV SF++G AASAATL++V+CA RYA+ NS+ML+HQ+SG   G    + ++V  M     ++ N+Y+  T ++  +++E++ +D W +A  C+ KGI+DEI
Sbjct:   90 IELHIQSYGGSLLPTFGLVDYICRNSVPVDSFIDGCAASAATLISVLCAKRYAYRNSIMLLHQLSGKTSGKFTDIEEQVSNMDLFMDMICNIYVDRTIMSRSEIDEVLSNDKWFSAKTCLEKGIIDEI 217          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A835Z7A8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.760e-35
Identity = 60/128 (46.88%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    4 VELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            +ELH+QS GGALMPA  +VD I R+PVPV S+++G+AASAATL++V CA RYA+ NSLM++HQ+S  A G  A+V +++  M     +++ +Y   T +   +++E++ +D W +A  C+ KGIVD I
Sbjct:  116 IELHIQSPGGALMPAFGVVDFITRNPVPVDSYIDGYAASAATLISVSCARRYAYANSLMMLHQLSASASGKFAEVQEQLANMDLFMAMIRKIYETRTVMNVSEIDEVLANDEWFSAEVCLEKGIVDAI 243          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A1Z8S6P8_9FLAO (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Crocinitomicaceae bacterium TMED45 TaxID=1986728 RepID=A0A1Z8S6P8_9FLAO)

HSP 1 Score: 127 bits (319), Expect = 2.140e-34
Identity = 58/129 (44.96%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            P++LH+ S+GG++  A++ VDTI    VP+HS VEG AASAATL++VVC  RY  P+S MLIHQ+S    G + +  D ++ ++ + KL+KN+Y  +T + +  L+E++KHD+W  A+ C +  +VDEI
Sbjct:   77 PIKLHINSNGGSIFAAMSCVDTIITCKVPIHSIVEGAAASAATLISVVCEKRYIKPHSYMLIHQLSTVFWGKMHEFDDEMNNLKNLMKLIKNIYKDYTNVPNKKLDEILKHDLWWDANTCKNYNLVDEI 205          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A1Z9HXU1_9PROT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Candidatus Pelagibacter sp. TMED166 TaxID=1986805 RepID=A0A1Z9HXU1_9PROT)

HSP 1 Score: 125 bits (315), Expect = 9.790e-34
Identity = 57/129 (44.19%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            P++LH+ S GG++   L+ VD I +S VPVH+ ++G AASAATLM+VV   RY H N+ ML+HQ+SG   G   ++ D +     + K +KN+Y  HT+I  D L++++KHD+W  A +C+  G+VDE+
Sbjct:   83 PIKLHINSYGGSVFAGLSAVDYILKSKVPVHTVIDGCAASAATLMSVVGTKRYMHKNACMLVHQLSGIMWGKFQEMKDDMLNSEMLMKKIKNIYKEHTKIPQDKLDQILKHDIWWDADQCLEYGLVDEV 211          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A835YR95_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR95_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.920e-33
Identity = 53/128 (41.41%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    4 VELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            +ELH+QS GGAL+P   ++D I R+PV V S+++ FAASAATL++V C+ RYA+P+S+M++HQ+SG A G   ++  +V  M    ++++ +Y+ HT +   +L  ++  D W +A  C+ +GI+D I
Sbjct:   84 IELHIQSPGGALLPTFGLIDFIARNPVSVDSYIDAFAASAATLISVSCSRRYAYPHSIMMLHQLSGSASGKFTEMETQVKNMDLFMEMIRRIYVDHTAMNRSELNGILAKDDWFSAQNCLDRGIIDAI 211          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A5B8IJ65_9VIRU (Clp protease n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IJ65_9VIRU)

HSP 1 Score: 123 bits (308), Expect = 1.330e-32
Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   10 LHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            LH+ S GG++   L+I+DTI  S +P+ S VEG AASAATL++VVC+ R   PNS MLIHQMS G  G + ++ D    ++ + K +K +Y  HT I  D L+ L+K D+W+ ++EC+  G+VD +
Sbjct:   93 LHINSFGGSVFAGLSIIDTIIDSEIPIVSIVEGSAASAATLISVVCSERIIKPNSFMLIHQMSSGFWGKMEEIKDEFINLKKLTKKLKGIYKKHTNIEKDKLKSLLKRDLWLDSAECLELGLVDRV 218          
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Match: A0A1Z9GY18_9PROT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Betaproteobacteria bacterium TMED156 TaxID=1986667 RepID=A0A1Z9GY18_9PROT)

HSP 1 Score: 119 bits (298), Expect = 3.550e-31
Identity = 55/129 (42.64%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 387
            P++LH+ S GG++   LA +D I  S +PVH+ ++G AASAATLM+ V A R  H NS ML+HQ+SG   G   ++ D  +  + +   +K +Y  HT+I   ++++L+KHD+W  A +CM  G+VDEI
Sbjct:   83 PIKLHINSYGGSVFAGLAALDYIKNSKIPVHTIIDGCAASAATLMSCVGAHRQIHRNSCMLVHQLSGAMWGKFQEMEDDFENSKMLMDKIKKIYNQHTKIPKKEMDKLLKHDLWWEADKCMQYGLVDEI 211          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135642 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE14_9STRA1.300e-87100.00ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A835ZA78_9STRA1.490e-4351.94ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z7B6_9STRA7.110e-4150.00ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A836CPU9_9STRA3.240e-3645.31ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z7A8_9STRA1.760e-3546.88ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1Z8S6P8_9FLAO2.140e-3444.96ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1Z9HXU1_9PROT9.790e-3444.19ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835YR95_9STRA3.920e-3341.41ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A5B8IJ65_9VIRU1.330e-3245.24Clp protease n=1 Tax=Mimiviridae sp. ChoanoV1 TaxI... [more]
A0A1Z9GY18_9PROT3.550e-3142.64ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:686799..687185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135642|gw1.3.165.1
BRITEko00000,ko00001,ko01000,ko01002
KEGG Pathwayko04112,ko04212,map04112,map04212
KEGG koko:K01358
EC3.4.21.92
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006986,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009987,GO:0010033,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0030163,GO:0031974,GO:0032991,GO:0033554,GO:0034514,GO:0034620,GO:0035966,GO:0035967,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0065003,GO:0070011,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Preferred nameCLPP
DescriptionATP-dependent Clp protease proteolytic subunit
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota,38PE0@33154|Opisthokonta,3BEPT@33208|Metazoa,3CVZ0@33213|Bilateria,40BBT@6231|Nematoda,1KU1Q@119089|Chromadorea,40XI0@6236|Rhabditida
Evalue1.78e-19
Seed ortholog6239.ZK970.2d
Hectar predicted targeting categoryother localisation
TranscriptId135964
TrackFilteredModels1
ProteinId135642
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135642gene_197Tribonema minus UTEX_B_3156 geneContig_3 686799..687185 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_197_1exon_197_1Tribonema minus UTEX_B_3156 exonContig_3 686799..687185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_197CDS_197Tribonema minus UTEX_B_3156 CDSContig_3 686799..687185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135642Trimin1|135642|gw1.3.165.1Tribonema minus UTEX_B_3156 polypeptideContig_3 686799..687185 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_197 ID=mRNA_197|Name=jgi.p|Trimin1|135642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_3:686799..687185- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTGTCGAACTGCATGTGCAGAGCAGTGGTGGGGCACTCATGCCTGCGCT
TGCAATCGTTGACACGATCTGCAGAAGTCCTGTGCCGGTTCACTCCTTCG
TGGAGGGCTTTGCCGCGTCCGCTGCCACGCTCATGACTGTCGTTTGTGCG
GTGAGATACGCGCATCCGAACTCGCTCATGCTCATCCACCAGATGAGCGG
CGGAGCCGAAGGCACCCTCGCGCAAGTCGGGGATAGAGTCGATGGCATGC
GAACCATCGACAAACTAGTGAAAAATGTGTACCTGATGCACACGCGCATT
GCCTCTGATGACCTGGAGGAGCTCATGAAGCATGACGTGTGGATGACGGC
ATCGGAGTGTATGCACAAGGGCATTGTCGACGAGATC
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protein sequence of jgi.p|Trimin1|135642

>Trimin1|135642|gw1.3.165.1 ID=Trimin1|135642|gw1.3.165.1|Name=jgi.p|Trimin1|135642|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCA
VRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRI
ASDDLEELMKHDVWMTASECMHKGIVDEI
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mRNA from alignment at Contig_3:686799..687185-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_197 ID=mRNA_197|Name=jgi.p|Trimin1|135642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_3:686799..687185- (Tribonema minus UTEX_B_3156 )
CCTGTCGAACTGCATGTGCAGAGCAGTGGTGGGGCACTCATGCCTGCGCT TGCAATCGTTGACACGATCTGCAGAAGTCCTGTGCCGGTTCACTCCTTCG TGGAGGGCTTTGCCGCGTCCGCTGCCACGCTCATGACTGTCGTTTGTGCG GTGAGATACGCGCATCCGAACTCGCTCATGCTCATCCACCAGATGAGCGG CGGAGCCGAAGGCACCCTCGCGCAAGTCGGGGATAGAGTCGATGGCATGC GAACCATCGACAAACTAGTGAAAAATGTGTACCTGATGCACACGCGCATT GCCTCTGATGACCTGGAGGAGCTCATGAAGCATGACGTGTGGATGACGGC ATCGGAGTGTATGCACAAGGGCATTGTCGACGAGATC
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Coding sequence (CDS) from alignment at Contig_3:686799..687185-

>mRNA_197 ID=mRNA_197|Name=jgi.p|Trimin1|135642|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_3:686799..687185- (Tribonema minus UTEX_B_3156 )
CCTGTCGAACTGCATGTGCAGAGCAGTGGTGGGGCACTCATGCCTGCGCT
TGCAATCGTTGACACGATCTGCAGAAGTCCTGTGCCGGTTCACTCCTTCG
TGGAGGGCTTTGCCGCGTCCGCTGCCACGCTCATGACTGTCGTTTGTGCG
GTGAGATACGCGCATCCGAACTCGCTCATGCTCATCCACCAGATGAGCGG
CGGAGCCGAAGGCACCCTCGCGCAAGTCGGGGATAGAGTCGATGGCATGC
GAACCATCGACAAACTAGTGAAAAATGTGTACCTGATGCACACGCGCATT
GCCTCTGATGACCTGGAGGAGCTCATGAAGCATGACGTGTGGATGACGGC
ATCGGAGTGTATGCACAAGGGCATTGTCGACGAGATC
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