mRNA_1978 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163601
Unique NamemRNA_1978
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A836CI72_9STRA (CheY-like superfamily protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI72_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.770e-78
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 1
Query:    1 MDTDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAVRT 378
            M+ DQSKPLHVLIVEDYNLSAQYMSQALKLC+CRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSM+WSGYIVAMSANEDLR SA+AAGADKFLHKLDHPVRDIVAIVNAV+T
Sbjct:    1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKT 126          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A836CPC2_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.500e-38
Identity = 69/120 (57.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   34 LIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQ----WSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAVRTK 381
            ++VEDY LSA YMSQAL++C C  +  A +GE A+E+AR +GPFDVVFVDL+MKGMGG+ CI  L+SM+    W+  IVAMSA+ +L  SA+AAGAD+F+HKL  PVRDI A++ +++ K
Sbjct:    1 MLVEDYQLSALYMSQALRMCGCTDVHAALNGECAIELARVKGPFDVVFVDLVMKGMGGVECIRALRSMEHDNGWTQCIVAMSADAELSSSALAAGADRFMHKLAQPVRDIFAMIASIKGK 120          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A835Z4T2_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.810e-38
Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1
Query:   25 LHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQ----WSGYIVAMSANEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
            L VL++EDY LSA+YM QALKLCNC  + IA SGE+A+ +    GPFDVVFVDL+M GMGG+ C+  L+ M+    W    VAMS++E L+  A+ AGAD+FL+KL HPVR++  I+  V
Sbjct:    6 LLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLV 125          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2V7KCU7_9BACT (DNA-binding response regulator n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KCU7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.720e-8
Identity = 39/121 (32.23%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQAL-KLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
            KP+H+L+ +D+      +   L +  N R +  A +GE+A++ AR+  P DVV +DL+M GMGG+  +  + ++     I+ +SA   ED  +  +AAGA  F+ K   PV ++   + +V
Sbjct:   11 KPIHILLADDHWAVRAGLHALLDRQANLRVVGEAATGEEALKQARALKP-DVVLMDLVMPGMGGLEAMRRIAALHAGTKILVLSAYLQEDRLLDVLAAGASGFVSK-GSPVENLTRAIRSV 129          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: UPI001C5623D1 (sigma-54 dependent transcriptional regulator n=1 Tax=Pseudohoeflea sp. DP4N28-3 TaxID=2860393 RepID=UPI001C5623D1)

HSP 1 Score: 60.1 bits (144), Expect = 5.540e-8
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   22 PLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMA-RSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANEDLR--MSAMAAGADKFLHKLDHPVRDIVAIVNAVRT 378
            P HVLIV+D  +  + +    +    + + +AE GE A+ M  RS G FDVV +DL+M G+GGIA +  +        ++  +    +   + AM AGA  F  K   P R ++AI NAVR+
Sbjct:    2 PSHVLIVDDDPVQRRLLKGTCERSGLK-VDLAEDGESAMSMIKRSAGGFDVVVLDLVMPGVGGIAVLEWMAENAPDIPVIVQTGQGGIETVVRAMRAGAHDFAVKPVSPERLLLAIGNAVRS 122          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: UPI001BAD0279 (sigma-54 dependent transcriptional regulator n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAD0279)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-7
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   31 VLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANE--DLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
            VL+V+D + + + + QA+      ++  AESGE A++   +  P DV+ +DL+M G+GG+A +  ++S  ++  +V ++A    D  + AM AGA  F  K   P R +V+I NA+
Sbjct:    5 VLVVDD-DPTQRRLIQAVLEREGFAVAHAESGEAAIDRLVAGAPADVIMLDLIMPGLGGLAALKEMRSRGFNQPVVVLTATGGIDTVVQAMQAGAQDFFVKPASPERILVSIRNAL 119          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2G5B3R4_COERN (CheY-like protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B3R4_COERN)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    7 TDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEM----ARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSG----YIVAMSAN--EDLRMSAMAAGADKFLHK 327
            +D + P+ VL+VED  ++   M + L+  N R   +A +GE+A+ +    A  +GP+ +VF+D+ M  M GIA    ++ ++ S      IVA++A+  E  R +A++AG + FL K
Sbjct:    2 SDSTPPIRVLLVEDNLINRSIMERFLRHMNVR-YDVASNGEEAIRIVAPAAVGRGPYHIVFMDIQMPIMDGIAATKHIRRLELSVKSPVIIVALTASSLESDRRAALSAGCNDFLTK 117          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A2V8JS96_9BACT (DNA-binding response regulator n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8JS96_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-7
Identity = 38/118 (32.20%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   25 LHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANE--DLRMSAMAAGADKFLHKLDHPVRDIVAIVNAV 372
            + +L+VED    A ++S+AL+  N  ++ +AESGE+A+EMA +  P+D + +D+ + G+ GI     L+  +    I+ ++A    + R+  + AGAD +L K    V +++A V A+
Sbjct:    1 MRILVVEDERRVASFVSRALRE-NSYTVDLAESGEKAIEMATAT-PYDSILLDIRLPGLSGIQVCRELRDAKIDTPILMLTARGLVEQRVEGLDAGADDYLTK-PFAVAELLARVRAL 115          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A536WNC6_9PROT (Response regulator transcription factor n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WNC6_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-7
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQALKLCNCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLD-----HPVRDIV 354
            K + V++V+D   S Q+ S   +   C      +  A SG +A+  A ++ P D++F+D+ M GM G+A  S++K    +  IV M+   +E+ R+ A+AAGAD FL K D     H V D++
Sbjct:    2 KRIRVMVVDD---SLQFASAVGQFLACNGNFEVLASATSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRVGAIAAGADAFLPKDDFAHGFHAVLDLL 120          
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Match: A0A536Z360_9PROT (Response regulator transcription factor (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z360_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 4.430e-7
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQALKLCNCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSA--NEDLRMSAMAAGADKFLHKLD-----HPVRDIV 354
            K + V++V+D   S Q+ S   +   C      +  A SG +A+  A ++ P D++F+D+ M GM G+A  S++K    +  IV M+   +E+ R+ A+AAGAD FL K D     H V D++
Sbjct:   58 KRIRVMVVDD---SLQFASAVGQFLACNDNFEVLASANSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRIGAIAAGADAFLPKDDFAHGFHAVLDLL 176          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163601 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI72_9STRA1.770e-7894.44CheY-like superfamily protein n=2 Tax=Tribonema mi... [more]
A0A836CPC2_9STRA2.500e-3857.50Response regulatory domain-containing protein n=1 ... [more]
A0A835Z4T2_9STRA9.810e-3854.17CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A2V7KCU7_9BACT4.720e-832.23DNA-binding response regulator n=1 Tax=Gemmatimona... [more]
UPI001C5623D15.540e-835.25sigma-54 dependent transcriptional regulator n=1 T... [more]
UPI001BAD02791.010e-733.62sigma-54 dependent transcriptional regulator n=1 T... [more]
A0A2G5B3R4_COERN1.360e-733.33CheY-like protein n=1 Tax=Coemansia reversa (strai... [more]
A0A2V8JS96_9BACT1.700e-732.20DNA-binding response regulator n=2 Tax=Acidobacter... [more]
A0A536WNC6_9PROT2.510e-734.15Response regulator transcription factor n=2 Tax=Be... [more]
A0A536Z360_9PROT4.430e-734.15Response regulator transcription factor (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:675423..675806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163601|e_gw1.26.2.1
DescriptionEAL domain
COG categoryT
Max annot lvl1224|Proteobacteria
EggNOG OGsCOG2200@1|root,COG2200@2|Bacteria,1N299@1224|Proteobacteria
Evalue4.08e-08
Seed ortholog1265503.KB905164_gene2024
Hectar predicted targeting categoryother localisation
TranscriptId163923
TrackFilteredModels1
ProteinId163601
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163601gene_1978Tribonema minus UTEX_B_3156 geneContig_26 675423..675806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1978_1exon_1978_1Tribonema minus UTEX_B_3156 exonContig_26 675423..675806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1978CDS_1978Tribonema minus UTEX_B_3156 CDSContig_26 675423..675806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163601Trimin1|163601|e_gw1.26.2.1Tribonema minus UTEX_B_3156 polypeptideContig_26 675423..675806 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCGATCAATCAAAGCCACTGCATGTCTTGATTGTGGAAGACTA
CAACTTGAGCGCTCAGTACATGTCACAAGCGCTGAAGCTATGCAATTGCA
GGTCCATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTAGAGATGGCCAGA
TCACAAGGACCTTTCGACGTTGTGTTTGTGGATCTACTGATGAAAGGAAT
GGGGGGCATAGCATGCATAAGTGTTCTGAAATCGATGCAGTGGTCAGGCT
ACATTGTTGCAATGAGCGCAAATGAAGACCTTCGAATGTCCGCCATGGCG
GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT
TGTGGCAATTGTGAATGCTGTCAGGACAAAATAA
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protein sequence of jgi.p|Trimin1|163601

>Trimin1|163601|e_gw1.26.2.1 ID=Trimin1|163601|e_gw1.26.2.1|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MDTDQSKPLHVLIVEDYNLSAQYMSQALKLCNCRSIQIAESGEQAVEMAR
SQGPFDVVFVDLLMKGMGGIACISVLKSMQWSGYIVAMSANEDLRMSAMA
AGADKFLHKLDHPVRDIVAIVNAVRTK*
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mRNA from alignment at Contig_26:675423..675806-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )
ATGGACACCGATCAATCAAAGCCACTGCATGTCTTGATTGTGGAAGACTA CAACTTGAGCGCTCAGTACATGTCACAAGCGCTGAAGCTATGCAATTGCA GGTCCATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTAGAGATGGCCAGA TCACAAGGACCTTTCGACGTTGTGTTTGTGGATCTACTGATGAAAGGAAT GGGGGGCATAGCATGCATAAGTGTTCTGAAATCGATGCAGTGGTCAGGCT ACATTGTTGCAATGAGCGCAAATGAAGACCTTCGAATGTCCGCCATGGCG GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT TGTGGCAATTGTGAATGCTGTCAGGACAAAATAA
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Coding sequence (CDS) from alignment at Contig_26:675423..675806-

>mRNA_1978 ID=mRNA_1978|Name=jgi.p|Trimin1|163601|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_26:675423..675806- (Tribonema minus UTEX_B_3156 )
ATGGACACCGATCAATCAAAGCCACTGCATGTCTTGATTGTGGAAGACTA
CAACTTGAGCGCTCAGTACATGTCACAAGCGCTGAAGCTATGCAATTGCA
GGTCCATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTAGAGATGGCCAGA
TCACAAGGACCTTTCGACGTTGTGTTTGTGGATCTACTGATGAAAGGAAT
GGGGGGCATAGCATGCATAAGTGTTCTGAAATCGATGCAGTGGTCAGGCT
ACATTGTTGCAATGAGCGCAAATGAAGACCTTCGAATGTCCGCCATGGCG
GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT
TGTGGCAATTGTGAATGCTGTCAGGACAAAATAA
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