mRNA_1976 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163499
Unique Name	mRNA_1976
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|163499 vs. uniprot
Match: A0A836CF24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF24_9STRA)

HSP 1 Score: 288 bits (736), Expect = 3.980e-93
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 1

Query:    1 MVWSADFYKHTKGWESESRIQRLRFYLDFTAAQRPSAYSASXXXXXXXXXXXXXXXXXXXXXXXXXXQKAISFNKLRRDNLSEFFDRVYSSLLSVRRSHQVHETIRSLPDSLGTMSQLEFLDLSGCKALTEXXXXXXXXXXXXXXXXXXXXXLKATAPLGEFAXXXXXXXXXXXXXXQFGGLPHLQQLQLVGCGVLVVLPAWLSALQELLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASLHIPNELRARATKKSLSIQE 936
            MVWSADFYKHTKGWESESRIQRLRFYLDFTAAQRPSAYSASXXXXXXXXXXXXXXXXXXXXXXXXXXQKAISFNKLRRDNLSEFFDRVYSSLLSVRRSHQVHETIRSLPDSLGTMSQLEFLDLSGCKALTEXXXXXXXXXXXXXXXXXXXXXLKATAPLGEFAXXXXXXXXXXXXXXQFGGLPHLQQLQLVGCGVLVVLPAWLSALQELLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASLHIPNELRARATKKSLSIQE
Sbjct:    1 MVWSADFYKHTKGWESESRIQRLRFYLDFTAAQRPSAYSASXXXXXXXXXXXXXXXXXXXXXXXXXXQKAISFNKLRRDNLSEFFDRVYSSLLSVRRSHQVHETIRSLPDSLGTMSQLEFLDLSGCKALTEXXXXXXXXXXXXXXXXXXXXXLKATAPLGEFAXXXXXXXXXXXXXXQFGGLPHLQQLQLVGCGVLVVLPAWLSALQELLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASLHIPNELRARATKKSLSIQE 312

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163499 vs. uniprot

BLAST of jgi.p|Trimin1|163499 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CF24_9STRA	3.980e-93	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_26	contig	Contig_26:669584..670522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163499\|e_gw1.26.233.1
Hectar predicted targeting category	other localisation
TranscriptId	163821
Track	FilteredModels1
ProteinId	163499

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163499	gene_1976	Tribonema minus UTEX_B_3156	gene	Contig_26 669584..670522 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1976_1	exon_1976_1	Tribonema minus UTEX_B_3156	exon	Contig_26 669584..670522 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1976	CDS_1976	Tribonema minus UTEX_B_3156	CDS	Contig_26 669584..670522 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163499	Trimin1\|163499\|e_gw1.26.233.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_26 669584..670522 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_26:669584..670522+
coding sequence from alignment at Contig_26:669584..670522+

spliced messenger RNA

>mRNA_1976 ID=mRNA_1976|Name=jgi.p|Trimin1|163499|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_26:669584..670522+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTGGTCAGCGGACTTCTACAAGCATACAAAAGGCTGGGAATCGGA
AAGTCGTATCCAGCGCCTCCGATTTTACTTAGACTTCACGGCAGCGCAAC
GGCCATCGGCATATTCTGCCAGTGCAGCATCGCAACAGCCATCAGCATAT
CCTGCCAGTGCAGCATCGCAACAGCCATCAGCGACTTCAGCCAGTGCAGC
ACAAAAAGCGATCAGCTTTAATAAGTTGAGACGTGACAATCTGTCAGAGT
TCTTTGACAGAGTGTACTCTAGCCTGCTGAGTGTTCGTCGGTCACACCAA
GTGCATGAGACCATTAGGAGCCTGCCAGACTCACTTGGTACGATGTCACA
GTTGGAGTTCTTGGATTTGTCAGGGTGCAAGGCGCTCACGGAACTGCCGC
CATCGTTCAGTAATCTGGCACAGTTAAAGTACTTGGATTTGAGTTACTGC
ACTGCCCTCAAGGCAACGGCGCCGTTAGGCGAGTTTGCAGAATTGCAGTA
CTTAGATTTGAGTCACTGCACTATGCTGGCTCAGTTTGGCGGGTTGCCAC
ATTTGCAACAATTGCAGTTGGTTGGGTGTGGAGTGCTAGTGGTACTGCCG
GCGTGGTTGAGTGCACTGCAAGAATTGCTGATCTTAAATTTGAGTAAGTG
CACTGCGCTCAAGGAACTGCCAGAGTCGTTTGGCAACTTGACAAAAATGC
TGGAGTTAAACCTCTCTGAGTGCCCTGCGCTCACGGCACTGCCGCAGTCA
TTCGGCAAGTTGACAAAGCTGACTAAATTGAATTTGAAAGAGTGCATTAG
GCTTAGGTCACTGCCGCCGTCTTTCTGCAACTTGGCAGCACTGAACGGTC
TGAACATGACGAAATGCCCGGCAAGTTTGCATATACCCAATGAGTTGCGC
GCACGTGCCACCAAGAAGAGCCTTAGCATTCAGGAATAG

protein sequence of jgi.p|Trimin1|163499

>Trimin1|163499|e_gw1.26.233.1 ID=Trimin1|163499|e_gw1.26.233.1|Name=jgi.p|Trimin1|163499|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=313bp
MVWSADFYKHTKGWESESRIQRLRFYLDFTAAQRPSAYSASAASQQPSAY
PASAASQQPSATSASAAQKAISFNKLRRDNLSEFFDRVYSSLLSVRRSHQ
VHETIRSLPDSLGTMSQLEFLDLSGCKALTELPPSFSNLAQLKYLDLSYC
TALKATAPLGEFAELQYLDLSHCTMLAQFGGLPHLQQLQLVGCGVLVVLP
AWLSALQELLILNLSKCTALKELPESFGNLTKMLELNLSECPALTALPQS
FGKLTKLTKLNLKECIRLRSLPPSFCNLAALNGLNMTKCPASLHIPNELR
ARATKKSLSIQE*

mRNA from alignment at Contig_26:669584..670522+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1976 ID=mRNA_1976|Name=jgi.p|Trimin1|163499|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_26:669584..670522+ (Tribonema minus UTEX_B_3156 )
ATGGTCTGGTCAGCGGACTTCTACAAGCATACAAAAGGCTGGGAATCGGA
AAGTCGTATCCAGCGCCTCCGATTTTACTTAGACTTCACGGCAGCGCAAC
GGCCATCGGCATATTCTGCCAGTGCAGCATCGCAACAGCCATCAGCATAT
CCTGCCAGTGCAGCATCGCAACAGCCATCAGCGACTTCAGCCAGTGCAGC
ACAAAAAGCGATCAGCTTTAATAAGTTGAGACGTGACAATCTGTCAGAGT
TCTTTGACAGAGTGTACTCTAGCCTGCTGAGTGTTCGTCGGTCACACCAA
GTGCATGAGACCATTAGGAGCCTGCCAGACTCACTTGGTACGATGTCACA
GTTGGAGTTCTTGGATTTGTCAGGGTGCAAGGCGCTCACGGAACTGCCGC
CATCGTTCAGTAATCTGGCACAGTTAAAGTACTTGGATTTGAGTTACTGC
ACTGCCCTCAAGGCAACGGCGCCGTTAGGCGAGTTTGCAGAATTGCAGTA
CTTAGATTTGAGTCACTGCACTATGCTGGCTCAGTTTGGCGGGTTGCCAC
ATTTGCAACAATTGCAGTTGGTTGGGTGTGGAGTGCTAGTGGTACTGCCG
GCGTGGTTGAGTGCACTGCAAGAATTGCTGATCTTAAATTTGAGTAAGTG
CACTGCGCTCAAGGAACTGCCAGAGTCGTTTGGCAACTTGACAAAAATGC
TGGAGTTAAACCTCTCTGAGTGCCCTGCGCTCACGGCACTGCCGCAGTCA
TTCGGCAAGTTGACAAAGCTGACTAAATTGAATTTGAAAGAGTGCATTAG
GCTTAGGTCACTGCCGCCGTCTTTCTGCAACTTGGCAGCACTGAACGGTC
TGAACATGACGAAATGCCCGGCAAGTTTGCATATACCCAATGAGTTGCGC
GCACGTGCCACCAAGAAGAGCCTTAGCATTCAGGAATAG

Coding sequence (CDS) from alignment at Contig_26:669584..670522+

>mRNA_1976 ID=mRNA_1976|Name=jgi.p|Trimin1|163499|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=939bp|location=Sequence derived from alignment at Contig_26:669584..670522+ (Tribonema minus UTEX_B_3156 )
ATGGTCTGGTCAGCGGACTTCTACAAGCATACAAAAGGCTGGGAATCGGA
AAGTCGTATCCAGCGCCTCCGATTTTACTTAGACTTCACGGCAGCGCAAC
GGCCATCGGCATATTCTGCCAGTGCAGCATCGCAACAGCCATCAGCATAT
CCTGCCAGTGCAGCATCGCAACAGCCATCAGCGACTTCAGCCAGTGCAGC
ACAAAAAGCGATCAGCTTTAATAAGTTGAGACGTGACAATCTGTCAGAGT
TCTTTGACAGAGTGTACTCTAGCCTGCTGAGTGTTCGTCGGTCACACCAA
GTGCATGAGACCATTAGGAGCCTGCCAGACTCACTTGGTACGATGTCACA
GTTGGAGTTCTTGGATTTGTCAGGGTGCAAGGCGCTCACGGAACTGCCGC
CATCGTTCAGTAATCTGGCACAGTTAAAGTACTTGGATTTGAGTTACTGC
ACTGCCCTCAAGGCAACGGCGCCGTTAGGCGAGTTTGCAGAATTGCAGTA
CTTAGATTTGAGTCACTGCACTATGCTGGCTCAGTTTGGCGGGTTGCCAC
ATTTGCAACAATTGCAGTTGGTTGGGTGTGGAGTGCTAGTGGTACTGCCG
GCGTGGTTGAGTGCACTGCAAGAATTGCTGATCTTAAATTTGAGTAAGTG
CACTGCGCTCAAGGAACTGCCAGAGTCGTTTGGCAACTTGACAAAAATGC
TGGAGTTAAACCTCTCTGAGTGCCCTGCGCTCACGGCACTGCCGCAGTCA
TTCGGCAAGTTGACAAAGCTGACTAAATTGAATTTGAAAGAGTGCATTAG
GCTTAGGTCACTGCCGCCGTCTTTCTGCAACTTGGCAGCACTGAACGGTC
TGAACATGACGAAATGCCCGGCAAGTTTGCATATACCCAATGAGTTGCGC
GCACGTGCCACCAAGAAGAGCCTTAGCATTCAGGAATAG