mRNA_1955 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163509
Unique NamemRNA_1955
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A835Z8A2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A2_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.190e-67
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGNLTVGDVRYIFTQLRGYADINPHRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ 312
            MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIG LTVGDVRYIFTQLRGY+DINP+RTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ
Sbjct:    1 MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGTLTVGDVRYIFTQLRGYSDINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ 104
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: Q8QNM3_ESV1K (EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM3_ESV1K)

HSP 1 Score: 58.2 bits (139), Expect = 2.450e-8
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   49 PFDEVPFDP---------SKLRTPSKSATRSRIGNLTVGDVRYIFTQLRGYA-DINPHRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKS 297
            PF E P D          +K     +S  +SR+G++TVGD+RY F QLR    D++P   L+ G+SAG F+L YL ++     ST  +K +KS
Sbjct:   35 PFYEKPVDEIQSIQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRET-----STATRKRRKS 122
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: D8LP74_ECTSI (EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP74_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.810e-8
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   49 PFDEVPFDPSKLRTPSKSATRS---------RIGNLTVGDVRYIFTQLRGYA-DINPHRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKS 297
            PF E P D  +    +K A RS         R+G++TVGD+RY F QLR    D++P   L+ G+SAG F+L YL ++     ST  +K +KS
Sbjct:   35 PFYEKPVDEIQSTQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRET-----STATRKRRKS 122
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A835Z1L0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 8.180e-81
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG 351
            VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG
Sbjct:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG 117
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S1ZV30_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZV30_TRICV)

HSP 1 Score: 130 bits (327), Expect = 4.360e-34
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   ++HP IV  + A Q K  +YF+L Y  GG+L +HLSK G       RF+A+E++LA+ Y+H+  I+ RDLKPEN+LLDA+GHVRLTDFGLSK  +S  + GAT+ CGT  Y+
Sbjct:   98 VLGYVNHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLSKVGKFAEPRARFYASEIVLAISYVHELDIIYRDLKPENVLLDAKGHVRLTDFGLSKEGISSSSSGATSFCGTPEYL 213
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S1ACK7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ACK7_NOCSC)

HSP 1 Score: 128 bits (322), Expect = 1.070e-33
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q  S +YF+L + PGG+L +HLS+         RF+A+E+LLA++YLH+  I+ RDLKPENILLD  GHV+LTDFGLSK  +S    GAT+MCGT  Y+
Sbjct:   70 VSHPFIVQLHYAFQTPSKLYFVLEFCPGGELFFHLSRASRFSEGRCRFYASEILLAIEYLHRLNIIYRDLKPENILLDLEGHVKLTDFGLSKEGISD-NYGATSMCGTPEYL 180
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S0FKL0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKL0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.260e-33
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   + HP IV  + A Q K  +YF+L Y  GG+L +HLSK G       RF+A+E++LA+ Y+H+  I+ RDLKPEN+LLDARGHVRLTDFGLSK  +S  + GAT+ CGT  Y+
Sbjct:  229 VLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLSKVGKFPEPRARFYASEIVLAISYVHELDIIYRDLKPENVLLDARGHVRLTDFGLSKEGISSSSSGATSFCGTPEYL 344
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S3L9Y4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9Y4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.550e-33
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   19 HPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            HP IV    A Q K N+Y +L + PGGDL +HL K   L     RF+AAE++LA+ YLH   ++ RDLKPEN+LLDA+GH+RLTDFGLSK  VS  + GA T CGT  Y+
Sbjct:  243 HPFIVGMRSAFQSKDNLYLVLDFCPGGDLFFHLGKLRKLSEERARFYAAEIILAISYLHSLDVIYRDLKPENLLLDAQGHIRLTDFGLSKDGVSNSSSGANTFCGTPEYL 352
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S0AFX3_9DINO (Hypothetical protein n=2 Tax=Gonyaulacales TaxID=40984 RepID=A0A7S0AFX3_9DINO)

HSP 1 Score: 125 bits (314), Expect = 2.080e-32
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q    +YF+L Y PGG+L +HLS+ G       RF+A+E+LLA++YLH+  I+ RDLKPENILLDA GHV+LTDFGLSK  +      A +MCGT  Y+
Sbjct:   74 VSHPFIVTLHYAFQTPKKLYFVLEYCPGGELFFHLSRAGRFSEGRCRFYASEILLAIEYLHRLNIIYRDLKPENILLDADGHVKLTDFGLSKEGIQD-NFSAKSMCGTPEYL 184
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A2T6IJE3_TOXGO (AGC kinase (Fragment) n=1 Tax=Toxoplasma gondii TgCATBr9 TaxID=943120 RepID=A0A2T6IJE3_TOXGO)

HSP 1 Score: 126 bits (317), Expect = 2.880e-32
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRV--SCWTQGATTMCGTEPYV 348
            V A +SHP IV  H A Q +  +YF+L Y PGG+L +HLS+ G  K  A  F+AAEVLLA+++LH+  +V RDLKPEN+LLD  GHVRLTDFGLSK  V  +C    A ++CGT  Y+
Sbjct:  135 VLAWVSHPFIVQMHYAFQTRKKLYFVLEYCPGGELFFHLSRAGRFKEYAACFYAAEVLLALEHLHKYNVVYRDLKPENVLLDEHGHVRLTDFGLSKEGVEDNC---SARSLCGTPEYL 249
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: B8C3Y1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Y1_THAPS)

HSP 1 Score: 123 bits (308), Expect = 7.880e-32
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   + HP IV  + A Q K  +YF+L Y  GG+L +HL K G        F+AAE+ LA+ Y+H   IV RDLKPEN+LLD+RGHVRLTDFGLSK  +S  + GA + CGT  Y+
Sbjct:   50 VLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLGKVGKFSEHRACFYAAEITLAISYVHSLDIVYRDLKPENVLLDSRGHVRLTDFGLSKEGISNSSSGANSFCGTPEYL 165
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: F0WXK1_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WXK1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.050e-32
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:   16 SHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            SHP IV  H A Q  S +YF+L Y PGG+L +HLS+ G    +  RF+AAE+++A+++LH   +V RDLKPENILLD  GH++L DFGL+K +V+    GAT++CGT  Y+
Sbjct:  129 SHPFIVGLHYAFQTSSKLYFVLDYCPGGELFFHLSRMGKFDENMTRFYAAELVVALEHLHSLGVVYRDLKPENILLDEMGHIKLADFGLAKDKVTEVDSGATSLCGTPEYL 239
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Match: A0A7S1A0A0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A0A0_NOCSC)

HSP 1 Score: 124 bits (311), Expect = 8.180e-32
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q    ++F+L + PGG+L +HLS+ G       RF+AAE+LLA++YLH+  I+ RDLKPENILLDA GHV+LTDFGLSK  +      A +MCGT  Y+
Sbjct:  102 VSHPFIVTLHYAFQTPKKLFFVLEFCPGGELFFHLSRTGRFTEGRCRFYAAEILLAIEYLHKMAIIYRDLKPENILLDAEGHVKLTDFGLSKEGIDD-NFSARSMCGTPEYL 212
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163509 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z8A2_9STRA1.190e-6797.12Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
Q8QNM3_ESV1K2.450e-838.71EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP74_ECTSI2.810e-839.78EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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BLAST of jgi.p|Trimin1|163509 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1L0_9STRA8.180e-81100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1ZV30_TRICV4.360e-3451.72Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ACK7_NOCSC1.070e-3354.46Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S0FKL0_9STRA1.260e-3352.59Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3L9Y4_9STRA4.550e-3354.55Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S0AFX3_9DINO2.080e-3253.57Hypothetical protein n=2 Tax=Gonyaulacales TaxID=4... [more]
A0A2T6IJE3_TOXGO2.880e-3254.24AGC kinase (Fragment) n=1 Tax=Toxoplasma gondii Tg... [more]
B8C3Y1_THAPS7.880e-3250.86Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
F0WXK1_9STRA8.050e-3251.35Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A7S1A0A0_NOCSC8.180e-3252.68Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:609489..609803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163509|e_gw1.26.220.1
Hectar predicted targeting categoryother localisation
TranscriptId163831
TrackFilteredModels1
ProteinId163509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163509gene_1955Tribonema minus UTEX_B_3156 geneContig_26 609489..609803 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1955_1exon_1955_1Tribonema minus UTEX_B_3156 exonContig_26 609489..609803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1955CDS_1955Tribonema minus UTEX_B_3156 CDSContig_26 609489..609803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163509Trimin1|163509|e_gw1.26.220.1Tribonema minus UTEX_B_3156 polypeptideContig_26 609489..609803 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1955 ID=mRNA_1955|Name=jgi.p|Trimin1|163509|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_26:609489..609803+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGATGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCGAAGA
GTGCGACTCGATCTAGAATTGGAAATTTGACTGTAGGTGATGTGCGGTAT
ATATTCACACAACTCCGCGGCTATGCGGACATTAACCCACACCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGTAGACTACAGTAG
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protein sequence of jgi.p|Trimin1|163509

>Trimin1|163509|e_gw1.26.220.1 ID=Trimin1|163509|e_gw1.26.220.1|Name=jgi.p|Trimin1|163509|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGNLTVGDVRY
IFTQLRGYADINPHRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQ
GRLQ*
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mRNA from alignment at Contig_26:609489..609803+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1955 ID=mRNA_1955|Name=jgi.p|Trimin1|163509|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_26:609489..609803+ (Tribonema minus UTEX_B_3156 )
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGATGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCGAAGA
GTGCGACTCGATCTAGAATTGGAAATTTGACTGTAGGTGATGTGCGGTAT
ATATTCACACAACTCCGCGGCTATGCGGACATTAACCCACACCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGTAGACTACAGTAG
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Coding sequence (CDS) from alignment at Contig_26:609489..609803+

>mRNA_1955 ID=mRNA_1955|Name=jgi.p|Trimin1|163509|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_26:609489..609803+ (Tribonema minus UTEX_B_3156 )
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGATGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCGAAGA
GTGCGACTCGATCTAGAATTGGAAATTTGACTGTAGGTGATGTGCGGTAT
ATATTCACACAACTCCGCGGCTATGCGGACATTAACCCACACCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGTAGACTACAGTAG
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