mRNA_1952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137116
Unique NamemRNA_1952
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137116 vs. uniprot
Match: A0A835YZ79_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ79_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.260e-5
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 1 
Query:    1 GGKCPHGRQQSQCKDCGGKGV 63
            GGKCPHGRQQSQCKDCGGKGV
Sbjct:    1 GGKCPHGRQQSQCKDCGGKGV 21
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137116 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZ79_9STRA4.260e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:605989..606489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137116|gw1.26.109.1
Hectar predicted targeting categoryother localisation
TranscriptId137438
TrackFilteredModels1
ProteinId137116
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137116gene_1952Tribonema minus UTEX_B_3156 geneContig_26 605989..606489 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1952_1exon_1952_1Tribonema minus UTEX_B_3156 exonContig_26 605989..606489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1952CDS_1952Tribonema minus UTEX_B_3156 CDSContig_26 605989..606489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137116Trimin1|137116|gw1.26.109.1Tribonema minus UTEX_B_3156 polypeptideContig_26 605989..606489 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Trimin1|137116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=501bp|location=Sequence derived from alignment at Contig_26:605989..606489- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGCAAGGATTGCGG
GGGAAAGGGTGTTTGTGAACATGGGAGGTTCCGGTACCGATGCAAGCTCT
GCGGCGGCGCAAGTATCTGCCACCATAATAGAATGCGTATCACATGTAGA
GAATGTCAGGGTTCAGGCATATGCGAACACAATCGAAGGCGAAGTGAATG
TCGTGAATGCGGTGGAGCAAGCGTCTGTGAGCATGATCGGCTGCGTGCTC
AGTGCAGGGACTGTGACGGCTCCGCAATTTGCGAACATGGGCGAAAAAGG
AGTCACTGCAAGGAATGCGATGGGTCTCAGATGTGTGAACATAACAGACA
GCGGCACAAGTGTAAGGAATGTGATGGCGCTAGCATATGCCCACATGGCA
AACGACAACACCGCTGCCACGAGTGTGGAGGTGTGAGTATATGCGAACAT
AACATTAACCGTGTCAGCTGTCGTGTGTGCAATCCTGCATGTGCGTGTCA
G
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protein sequence of jgi.p|Trimin1|137116

>Trimin1|137116|gw1.26.109.1 ID=Trimin1|137116|gw1.26.109.1|Name=jgi.p|Trimin1|137116|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=167bp
GGKCPHGRQQSQCKDCGGKGVCEHGRFRYRCKLCGGASICHHNRMRITCR
ECQGSGICEHNRRRSECRECGGASVCEHDRLRAQCRDCDGSAICEHGRKR
SHCKECDGSQMCEHNRQRHKCKECDGASICPHGKRQHRCHECGGVSICEH
NINRVSCRVCNPACACQ
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mRNA from alignment at Contig_26:605989..606489-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Trimin1|137116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=501bp|location=Sequence derived from alignment at Contig_26:605989..606489- (Tribonema minus UTEX_B_3156 )
GGCGGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGCAAGGATTGCGG
GGGAAAGGGTGTTTGTGAACATGGGAGGTTCCGGTACCGATGCAAGCTCT
GCGGCGGCGCAAGTATCTGCCACCATAATAGAATGCGTATCACATGTAGA
GAATGTCAGGGTTCAGGCATATGCGAACACAATCGAAGGCGAAGTGAATG
TCGTGAATGCGGTGGAGCAAGCGTCTGTGAGCATGATCGGCTGCGTGCTC
AGTGCAGGGACTGTGACGGCTCCGCAATTTGCGAACATGGGCGAAAAAGG
AGTCACTGCAAGGAATGCGATGGGTCTCAGATGTGTGAACATAACAGACA
GCGGCACAAGTGTAAGGAATGTGATGGCGCTAGCATATGCCCACATGGCA
AACGACAACACCGCTGCCACGAGTGTGGAGGTGTGAGTATATGCGAACAT
AACATTAACCGTGTCAGCTGTCGTGTGTGCAATCCTGCATGTGCGTGTCA
G
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Coding sequence (CDS) from alignment at Contig_26:605989..606489-

>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Trimin1|137116|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=501bp|location=Sequence derived from alignment at Contig_26:605989..606489- (Tribonema minus UTEX_B_3156 )
GGCGGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGCAAGGATTGCGG
GGGAAAGGGTGTTTGTGAACATGGGAGGTTCCGGTACCGATGCAAGCTCT
GCGGCGGCGCAAGTATCTGCCACCATAATAGAATGCGTATCACATGTAGA
GAATGTCAGGGTTCAGGCATATGCGAACACAATCGAAGGCGAAGTGAATG
TCGTGAATGCGGTGGAGCAAGCGTCTGTGAGCATGATCGGCTGCGTGCTC
AGTGCAGGGACTGTGACGGCTCCGCAATTTGCGAACATGGGCGAAAAAGG
AGTCACTGCAAGGAATGCGATGGGTCTCAGATGTGTGAACATAACAGACA
GCGGCACAAGTGTAAGGAATGTGATGGCGCTAGCATATGCCCACATGGCA
AACGACAACACCGCTGCCACGAGTGTGGAGGTGTGAGTATATGCGAACAT
AACATTAACCGTGTCAGCTGTCGTGTGTGCAATCCTGCATGTGCGTGTCA
G
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