mRNA_1951 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163559
Unique NamemRNA_1951
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A835ZEI1_9STRA (Ribonuclease H-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI1_9STRA)

HSP 1 Score: 502 bits (1293), Expect = 1.300e-179
Identity = 251/256 (98.05%), Postives = 253/256 (98.83%), Query Frame = 1 
Query:    1 MSPSPQLFSTQNRYIALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEEFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768
            M+PSPQLFS+QNRY ALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLE FILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLH YPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV
Sbjct:    1 MTPSPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 256
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BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA)

HSP 1 Score: 303 bits (775), Expect = 5.370e-101
Identity = 156/248 (62.90%), Postives = 190/248 (76.61%), Query Frame = 1 
Query:   34 NRYIALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEEFILKHAKKR--QPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVEST--GMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVS 765
            N+Y A+W+ LDIECT LDY + +FGILEIAA++VD++MEVIDTFHVIV+Q A II  +S+WCK+RF SRLEGGNDLFAQC+ S ITE  AG MLE+FI+KHAK+R  QP    +   QKR  F+AAE E IDA +  E  +   E+         VE T  G+ H+R+MLAGCSVYFDRAVLLH YPRLR  IGHKTIELSSLLEI R+WRPD+L +LPP Q+ HRAL+DV+E+VSLLRWFWR  +V+
Sbjct:    3 NKYAAIWLFLDIECTQLDYQAHNFGILEIAAAIVDNSMEVIDTFHVIVNQPAHIIAAASKWCKKRFCSRLEGGNDLFAQCDASIITEAQAGFMLEQFIMKHAKERHMQP----DEAEQKRRFFQAAELETIDAAIETETSEAFIEK--------DVEKTQGGISHFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWFWRFIVVA 238
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BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.780e-74
Identity = 124/244 (50.82%), Postives = 158/244 (64.75%), Query Frame = 1 
Query:   37 RYIALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEEFILKHAKKRQPAAGSEHDAQ----KRNLFRAAEFEPI----DALVAH-EVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741
            RY A W+  DIECT LD TSP FG+LEIAA+V  D + V DTFHVI+HQ  R++  +S WC + F  R  GGNDLF QC  S I+E  AG +LE FI+KHAK R+  A +  +      KRN+F+ AEF  +    DA+    E  D       P   + +  +   + YR+M AGCS YFDR V+L+R+P LR YI HKTI+++S+LEI RRWRPDLLRSLP  Q  HRAL DV+E++ LLRW
Sbjct:   17 RYDATWIWCDIECTGLDPTSPGFGVLEIAAAVTGDDLTVQDTFHVIIHQPDRVLAGASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEVPEAVVKRNVFKTAEFGDVIEDGDAMAGDIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRW 260
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 231 bits (588), Expect = 4.660e-72
Identity = 125/248 (50.40%), Postives = 162/248 (65.32%), Query Frame = 1 
Query:   37 RYIALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEEFILKHAKKRQPAAGSEHD----AQKRNLFRAAEFEPIDALVAHEVV--DGPAEEVAPPKQQM-------KVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741
            RY A+W+  DIECT LD  +P FGILEIAA++  D + V DTFHV+VHQ  R++  +SRWC + F  R  GGNDLF Q + S I+E  AG MLE FI+KHAK R+  A +  +    A KR++F+ AEF      V  EVV  +GPA E A  +Q         + ++   + +R+M AGCS YFDR  +L R+P LR Y+ HKTI+++S+LEI RRWRPDLLR LP  Q  HRAL DV+E+V LLRW
Sbjct:   28 RYDAIWLWCDIECTGLDPAAPGFGILEIAAAITGDDLTVQDTFHVVVHQPPRVLAGASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEGPEAACKRSMFKTAEF----GDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRW 271
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A835Z6J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J6_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.150e-53
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:  508 MEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768
            MEHYRIMLAGCSVYFDRAVLLHRYPRLR+Y+GHKTIELSSLL IVRRWRPDLLRSLPPTQECHRAL+DVMEAVSLLRWFWRSFLV V
Sbjct:    1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV 87
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.560e-27
Identity = 76/238 (31.93%), Postives = 127/238 (53.36%), Query Frame = 1 
Query:   52 WMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQ-NARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEEFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPID-ALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFL 759
            W  +D+E T LD T  +  ILEI   V D  +  ID+  +++H  ++ ++  SS WC+++F  R EGGN LF  C  S ++   A   +  F   ++K      G  +D  +  +  +  F   D  L A+    G ++      QQ    S    + + +LAG +VYFDR  LL  +P L+ +  ++ +++S+ LE+VRRWRPD+   LP     HRA  D+++++SL+++F  +FL
Sbjct:   43 WFWIDMETTGLD-TDTNL-ILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKD----VGGRYDTTQ--ITSSQPF--FDRTLGANGTFLGASDASRCRHQQQPRRSN---YKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFL 267
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 110 bits (275), Expect = 9.950e-26
Identity = 73/237 (30.80%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:   52 WMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIG-NSSRWCKQRFRSRLEGGNDLFAQCELS-TITEEMAGAMLE--EFILKH---AKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741
            W  +D+E +SLD++  +  +LE+A  V D  + V D+ H+++H    I+   SS WCKQRF S   GGN LF +C  S T   +    ML+  E+   H      R+P         +          P+     H  +         PKQ       G +  + +L G +VYFDR ++   +P L+ Y+ HK I+++++LE  +R+RPDL++  P     HRA+ D+M++++L R+
Sbjct:   12 WFWIDMETSSLDFSQSE--VLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCT--HRDI---------PKQCTTTPG-GSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234
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BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A034WYC5_BACDO (Putative oligoribonuclease n=3 Tax=Bactrocera TaxID=47832 RepID=A0A034WYC5_BACDO)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-10
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  529 LAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768
            LAG S+Y DR  L H  P +  Y+ ++ I++SS+ E+ RRWR DL++S P  +  HR+L D+ +++  L+++  +F  +V
Sbjct:  145 LAGNSIYMDRLFLRHHMPSVDNYLHYRVIDISSIKELCRRWRSDLIKSAPEKRLLHRSLEDLQDSIEELKYYRDNFFKTV 224
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: A0A8B7KWF2_DROEL (probable oligoribonuclease n=1 Tax=Drosophila elegans TaxID=30023 RepID=A0A8B7KWF2_DROEL)

HSP 1 Score: 68.9 bits (167), Expect = 2.100e-10
Identity = 30/77 (38.96%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  529 LAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFL 759
            LAG SVY DR  +    P +  Y+ ++ I++S++ E+ RRWRPD+L++ P     HR+L D++E++S LR++  +F+
Sbjct:  140 LAGNSVYMDRLFIRRFMPSVDEYLHYRIIDVSTIKELARRWRPDVLKAAPKKTFAHRSLDDILESISELRYYKANFI 216
[Close]
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Match: UPI0006B71C16 (probable oligoribonuclease n=1 Tax=Bactrocera oleae TaxID=104688 RepID=UPI0006B71C16)

HSP 1 Score: 68.6 bits (166), Expect = 3.160e-10
Identity = 29/76 (38.16%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  529 LAGCSVYFDRAVLLHRYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSF 756
            LAG S+Y DR  L H  P +  Y+ ++ I++SS+ E+ RRWRPD+ +S P  +  HR+L D+ +++  L+++  +F
Sbjct:  144 LAGNSIYMDRLFLRHHMPSVNDYMHYRVIDISSIKELCRRWRPDVQKSAPEKRLLHRSLEDLQDSIEELKYYRDNF 219
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163559 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEI1_9STRA1.300e-17998.05Ribonuclease H-like domain-containing protein n=2 ... [more]
A0A835Z4U2_9STRA5.370e-10162.90Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A836CDV0_9STRA1.780e-7450.82Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YX31_9STRA4.660e-7250.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6J6_9STRA2.150e-5394.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPG5_ECTSI9.560e-2731.93EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
Q6XM84_9PHYC9.950e-2630.80FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A034WYC5_BACDO1.690e-1037.50Putative oligoribonuclease n=3 Tax=Bactrocera TaxI... [more]
A0A8B7KWF2_DROEL2.100e-1038.96probable oligoribonuclease n=1 Tax=Drosophila eleg... [more]
UPI0006B71C163.160e-1038.16probable oligoribonuclease n=1 Tax=Bactrocera olea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:602712..603482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163559|e_gw1.26.190.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
KEGG rclassRC00408
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG ModuleM00549
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG koko:K01179,ko:K01835,ko:K13288
EC3.2.1.4,5.4.2.2
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
Preferred nameREXO2
DescriptionRNA phosphodiester bond hydrolysis, exonucleolytic
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1949@1|root,KOG3242@2759|Eukaryota
Evalue1.57e-27
Seed ortholog2880.D8LPG5
Hectar predicted targeting categoryother localisation
TranscriptId163881
TrackFilteredModels1
ProteinId163559
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163559gene_1951Tribonema minus UTEX_B_3156 geneContig_26 602712..603482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1951_1exon_1951_1Tribonema minus UTEX_B_3156 exonContig_26 602712..603482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1951CDS_1951Tribonema minus UTEX_B_3156 CDSContig_26 602712..603482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163559Trimin1|163559|e_gw1.26.190.1Tribonema minus UTEX_B_3156 polypeptideContig_26 602712..603482 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1951 ID=mRNA_1951|Name=jgi.p|Trimin1|163559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_26:602712..603482- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCCTCGCCTCAGCTTTTCAGCACTCAAAACCGGTACATTGCGCT
GTGGATGATGTTGGACATTGAGTGCACTTCACTTGACTACACAAGCCCGG
ACTTTGGCATCCTTGAAATAGCTGCCAGCGTAGTGGATGATGCCATGGAA
GTCATTGACACATTTCATGTCATTGTCCACCAGAATGCCCGCATCATTGG
CAATTCTTCACGGTGGTGCAAACAGCGCTTCCGCTCTCGATTGGAAGGCG
GCAACGACTTGTTCGCGCAATGTGAGCTGTCTACGATCACAGAGGAGATG
GCTGGGGCCATGCTGGAGGAGTTTATACTTAAGCATGCAAAGAAGCGTCA
GCCGGCTGCAGGATCGGAACATGATGCGCAAAAGAGGAATCTGTTCCGTG
CAGCAGAGTTCGAGCCTATCGATGCTCTTGTAGCGCATGAAGTTGTTGAC
GGTCCTGCAGAGGAAGTTGCTCCCCCCAAGCAACAGATGAAGGTGGAGTC
GACAGGGATGGAGCATTACCGCATTATGCTAGCTGGATGCTCTGTCTACT
TTGATAGAGCAGTCCTGTTGCATCGCTACCCCAGACTCAGAATGTATATC
GGCCATAAAACGATAGAGCTGTCAAGCCTGCTTGAAATTGTGAGGCGGTG
GCGGCCGGACTTACTTCGATCACTGCCGCCTACTCAAGAATGCCACCGCG
CTTTGGTGGACGTCATGGAGGCTGTTTCGCTTCTGCGCTGGTTCTGGAGG
TCATTCCTTGTGAGTGTCTAG
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protein sequence of jgi.p|Trimin1|163559

>Trimin1|163559|e_gw1.26.190.1 ID=Trimin1|163559|e_gw1.26.190.1|Name=jgi.p|Trimin1|163559|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp
MSPSPQLFSTQNRYIALWMMLDIECTSLDYTSPDFGILEIAASVVDDAME
VIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEM
AGAMLEEFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVD
GPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHRYPRLRMYI
GHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWR
SFLVSV*
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mRNA from alignment at Contig_26:602712..603482-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1951 ID=mRNA_1951|Name=jgi.p|Trimin1|163559|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_26:602712..603482- (Tribonema minus UTEX_B_3156 )
ATGAGCCCCTCGCCTCAGCTTTTCAGCACTCAAAACCGGTACATTGCGCT
GTGGATGATGTTGGACATTGAGTGCACTTCACTTGACTACACAAGCCCGG
ACTTTGGCATCCTTGAAATAGCTGCCAGCGTAGTGGATGATGCCATGGAA
GTCATTGACACATTTCATGTCATTGTCCACCAGAATGCCCGCATCATTGG
CAATTCTTCACGGTGGTGCAAACAGCGCTTCCGCTCTCGATTGGAAGGCG
GCAACGACTTGTTCGCGCAATGTGAGCTGTCTACGATCACAGAGGAGATG
GCTGGGGCCATGCTGGAGGAGTTTATACTTAAGCATGCAAAGAAGCGTCA
GCCGGCTGCAGGATCGGAACATGATGCGCAAAAGAGGAATCTGTTCCGTG
CAGCAGAGTTCGAGCCTATCGATGCTCTTGTAGCGCATGAAGTTGTTGAC
GGTCCTGCAGAGGAAGTTGCTCCCCCCAAGCAACAGATGAAGGTGGAGTC
GACAGGGATGGAGCATTACCGCATTATGCTAGCTGGATGCTCTGTCTACT
TTGATAGAGCAGTCCTGTTGCATCGCTACCCCAGACTCAGAATGTATATC
GGCCATAAAACGATAGAGCTGTCAAGCCTGCTTGAAATTGTGAGGCGGTG
GCGGCCGGACTTACTTCGATCACTGCCGCCTACTCAAGAATGCCACCGCG
CTTTGGTGGACGTCATGGAGGCTGTTTCGCTTCTGCGCTGGTTCTGGAGG
TCATTCCTTGTGAGTGTCTAG
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Coding sequence (CDS) from alignment at Contig_26:602712..603482-

>mRNA_1951 ID=mRNA_1951|Name=jgi.p|Trimin1|163559|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_26:602712..603482- (Tribonema minus UTEX_B_3156 )
ATGAGCCCCTCGCCTCAGCTTTTCAGCACTCAAAACCGGTACATTGCGCT
GTGGATGATGTTGGACATTGAGTGCACTTCACTTGACTACACAAGCCCGG
ACTTTGGCATCCTTGAAATAGCTGCCAGCGTAGTGGATGATGCCATGGAA
GTCATTGACACATTTCATGTCATTGTCCACCAGAATGCCCGCATCATTGG
CAATTCTTCACGGTGGTGCAAACAGCGCTTCCGCTCTCGATTGGAAGGCG
GCAACGACTTGTTCGCGCAATGTGAGCTGTCTACGATCACAGAGGAGATG
GCTGGGGCCATGCTGGAGGAGTTTATACTTAAGCATGCAAAGAAGCGTCA
GCCGGCTGCAGGATCGGAACATGATGCGCAAAAGAGGAATCTGTTCCGTG
CAGCAGAGTTCGAGCCTATCGATGCTCTTGTAGCGCATGAAGTTGTTGAC
GGTCCTGCAGAGGAAGTTGCTCCCCCCAAGCAACAGATGAAGGTGGAGTC
GACAGGGATGGAGCATTACCGCATTATGCTAGCTGGATGCTCTGTCTACT
TTGATAGAGCAGTCCTGTTGCATCGCTACCCCAGACTCAGAATGTATATC
GGCCATAAAACGATAGAGCTGTCAAGCCTGCTTGAAATTGTGAGGCGGTG
GCGGCCGGACTTACTTCGATCACTGCCGCCTACTCAAGAATGCCACCGCG
CTTTGGTGGACGTCATGGAGGCTGTTTCGCTTCTGCGCTGGTTCTGGAGG
TCATTCCTTGTGAGTGTCTAG
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