mRNA_1939 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163593
Unique Name	mRNA_1939
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|163593 vs. uniprot
Match: A0A835Z869_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z869_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.310e-31
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query:    1 MHPSTGAQCRSSARFSKSGTGVPDRCVAHGGGNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXQFTDPITGAACXXXXXXXXXXXXXXXHSAQFSKSGTGAHDXXXXXXXXXXXQFADPITGAVCGTS 453
            MHPSTGAQCRSSARFSKSGTGVPDRCVAHGGGNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXQFTDPITGAACXXXXXXXXXXXXXXXHSAQFSKSGTGAHDXXXXXXXXXXXQFADPITGAVCGTS
Sbjct:    1 MHPSTGAQCRSSARFSKSGTGVPDRCVAHGGGNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXQFTDPITGAACXXXXXXXXXXXXXXXHSAQFSKSGTGAHDXXXXXXXXXXXQFADPITGAVCGTS 151

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163593 vs. uniprot

BLAST of jgi.p|Trimin1|163593 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z869_9STRA	2.310e-31	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_26	contig	Contig_26:577950..579401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163593\|e_gw1.26.17.1
Hectar predicted targeting category	other localisation
TranscriptId	163915
Track	FilteredModels1
ProteinId	163593

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163593	gene_1939	Tribonema minus UTEX_B_3156	gene	Contig_26 577950..579401 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163593	Trimin1\|163593\|e_gw1.26.17.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_26 577950..579401 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1939_1	exon_1939_1	Tribonema minus UTEX_B_3156	exon	Contig_26 577950..578056 +
exon_1939_2	exon_1939_2	Tribonema minus UTEX_B_3156	exon	Contig_26 578090..578167 +
exon_1939_3	exon_1939_3	Tribonema minus UTEX_B_3156	exon	Contig_26 578204..578323 +
exon_1939_4	exon_1939_4	Tribonema minus UTEX_B_3156	exon	Contig_26 578357..578389 +
exon_1939_5	exon_1939_5	Tribonema minus UTEX_B_3156	exon	Contig_26 578426..578944 +
exon_1939_6	exon_1939_6	Tribonema minus UTEX_B_3156	exon	Contig_26 579314..579401 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1939	CDS_1939	Tribonema minus UTEX_B_3156	CDS	Contig_26 577950..578056 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_26:577950..579401+
coding sequence from alignment at Contig_26:577950..579401+

spliced messenger RNA

>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Trimin1|163593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=945bp|location=Sequence derived from alignment at Contig_26:577950..579401+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCTAGCACGGGCGCCCAGTGCCGCAGCTCCGCAAGATTCAGCAA
GTCTGGCACCGGGGTACCCGACAGGTGCGTTGCTCACGGCGGTGGAAACC
GGTGCCACAAATACGCACAGTGCAGCAAGTCTGGCACCGGGGTACCCGAC
AGGTGCATCGGTCATGGAGGTGGCGATAGGTGCCATTCCGCACAGTGCAG
CAAATCGGGCACAGGGGCAGCCGCCAGGTGCAAGGGTCATGGAGGTGGGG
ACAGGTGCCAGTTCACCGACCCCATCACCGGCGCCGCGTGCGGCAGTTCC
GCACAGTGCAAAATGCACGGAGGTGGCGATAGGTGCCATTCCGCACAGTT
CAGCAAATCGGGCACAGGGGCGCACGACAGGTGCATTGGTCATGGGGGTG
GCGACAGGTGCCAGTTTGCGGACCCCATCACCGGCGCCGTATGCGGCACT
TCAGCACAGCACAGCAAGACAGGCACTGGGGCACCCGACAGGTGCATTGG
CCATGGGGGTGGCGACCGGTGCCAGTTTGCGGACCCCATCACCGGCGCCG
TATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACAGGGGCACCCGAC
AGGTGCGTCGGTCATGGAGGTGGCGACAGGTGCCAGTTTACGGACCCCAT
CACCGGCGCCGTATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACTG
GGGCACCCGACAGGTGCATTGGTCATGGGGGTGGCGACCGGTGCCAGTTT
GCGGACCCCATCACAGGCGCCGTATGCGGCACTTCAGCACAGCACAGCAA
GACAGGCACAGGGGCACCCGACAGGTGCGTCGGTCATGGAGGTGGCGACA
GGTGCCACTCGGCAATGTCCAGCAAGACTGGCACAGGGGCACCTGACAGG
TGCGTCGCTCATGGGGGTGGCGATAGGTGCGAGATGGAGTGCTGC

protein sequence of jgi.p|Trimin1|163593

>Trimin1|163593|e_gw1.26.17.1 ID=Trimin1|163593|e_gw1.26.17.1|Name=jgi.p|Trimin1|163593|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=315bp
MHPSTGAQCRSSARFSKSGTGVPDRCVAHGGGNRCHKYAQCSKSGTGVPD
RCIGHGGGDRCHSAQCSKSGTGAAARCKGHGGGDRCQFTDPITGAACGSS
AQCKMHGGGDRCHSAQFSKSGTGAHDRCIGHGGGDRCQFADPITGAVCGT
SAQHSKTGTGAPDRCIGHGGGDRCQFADPITGAVCGTSAQHSKTGTGAPD
RCVGHGGGDRCQFTDPITGAVCGTSAQHSKTGTGAPDRCIGHGGGDRCQF
ADPITGAVCGTSAQHSKTGTGAPDRCVGHGGGDRCHSAMSSKTGTGAPDR
CVAHGGGDRCEMECC

mRNA from alignment at Contig_26:577950..579401+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Trimin1|163593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1452bp|location=Sequence derived from alignment at Contig_26:577950..579401+ (Tribonema minus UTEX_B_3156 )
ATGCATCCTAGCACGGGCGCCCAGTGCCGCAGCTCCGCAAGATTCAGCAA
GTCTGGCACCGGGGTACCCGACAGGTGCGTTGCTCACGGCGGTGGAAACC
GGTGCCAGTTTACGGACCCCATCACCGGCACCGCGTGCAGCAAATACGCA
CAGTGCAGCAAGTCTGGCACCGGGGTACCCGACAGGTGCATCGGTCATGG
AGGTGGCGATAGGTGCCAGTTCACCGACCCCATCACCGGCGCCGCATGCG
GCAGTTCCGCACAGTGCAGCAAATCGGGCACAGGGGCAGCCGCCAGGTGC
AAGGGTCATGGAGGTGGGGACAGGTGCCAGTTCACCGACCCCATCACCGG
CGCCGCGTGCGGCAGTTCCGCACAGTCCAGCAAGACTGGCACAGGGGCGC
ACGACAGGTGCAAAATGCACGGAGGTGGCGATAGGTGCCAGTTCACCGAC
CCCATCACCGGCGCCGCATGCGGCAGTTCCGCACAGTTCAGCAAATCGGG
CACAGGGGCGCACGACAGGTGCATTGGTCATGGGGGTGGCGACAGGTGCC
AGTTTGCGGACCCCATCACCGGCGCCGTATGCGGCACTTCAGCACAGCAC
AGCAAGACAGGCACTGGGGCACCCGACAGGTGCATTGGCCATGGGGGTGG
CGACCGGTGCCAGTTTGCGGACCCCATCACCGGCGCCGTATGCGGCACTT
CAGCACAGCACAGCAAGACAGGCACAGGGGCACCCGACAGGTGCGTCGGT
CATGGAGGTGGCGACAGGTGCCAGTTTACGGACCCCATCACCGGCGCCGT
ATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACTGGGGCACCCGACA
GGTGCATTGGTCATGGGGGTGGCGACCGGTGCCAGTTTGCGGACCCCATC
ACAGGCGCCGTATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACAGG
GGCACCCGACAGGTGCGTCGGTCATGGAGGTGGCGACAGGTGCCAGTTTA
CGGACCCCATCACCGGCGCCCAGTGCCGCAGCTCCGCAAGATTCAGCAAG
TTTGGCACTGGGGCACCCGACAGGTGCATTGGTCATGGGGGTGGCGACAG
GTGCCAGTTTGCGGACCCCATCACCGGCGCCGTATGCGGCACTTCAGCAC
AGCACAGCAAGACAGGCACTGGGGCACCCGACAGGTGCATTGGTCATGGG
GGTGGCGATAGGTGCCAGTTTACGGACCCCATATCCGGCGCCACATGCGC
CAGCTCCGCACAGCGCAGCAAGACAGGCACAGGGGCACCCGACAGGTGCG
TCGGTCATGGAGGTGGCGACAGGTGCCAGTTTACGGACCCCATCACCGGC
GCCGCGTGCGCCAGCTCGGCAATGTCCAGCAAGACTGGCACAGGGGCACC
TGACAGGTGCGTCGCTCATGGGGGTGGCGATAGGTGCGAGATGGAGTGCT
GC

Coding sequence (CDS) from alignment at Contig_26:577950..579401+

>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Trimin1|163593|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=945bp|location=Sequence derived from alignment at Contig_26:577950..579401+ (Tribonema minus UTEX_B_3156 )
ATGCATCCTAGCACGGGCGCCCAGTGCCGCAGCTCCGCAAGATTCAGCAA
GTCTGGCACCGGGGTACCCGACAGGTGCGTTGCTCACGGCGGTGGAAACC
GGTGCCACAAATACGCACAGTGCAGCAAGTCTGGCACCGGGGTACCCGAC
AGGTGCATCGGTCATGGAGGTGGCGATAGGTGCCATTCCGCACAGTGCAG
CAAATCGGGCACAGGGGCAGCCGCCAGGTGCAAGGGTCATGGAGGTGGGG
ACAGGTGCCAGTTCACCGACCCCATCACCGGCGCCGCGTGCGGCAGTTCC
GCACAGTGCAAAATGCACGGAGGTGGCGATAGGTGCCATTCCGCACAGTT
CAGCAAATCGGGCACAGGGGCGCACGACAGGTGCATTGGTCATGGGGGTG
GCGACAGGTGCCAGTTTGCGGACCCCATCACCGGCGCCGTATGCGGCACT
TCAGCACAGCACAGCAAGACAGGCACTGGGGCACCCGACAGGTGCATTGG
CCATGGGGGTGGCGACCGGTGCCAGTTTGCGGACCCCATCACCGGCGCCG
TATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACAGGGGCACCCGAC
AGGTGCGTCGGTCATGGAGGTGGCGACAGGTGCCAGTTTACGGACCCCAT
CACCGGCGCCGTATGCGGCACTTCAGCACAGCACAGCAAGACAGGCACTG
GGGCACCCGACAGGTGCATTGGTCATGGGGGTGGCGACCGGTGCCAGTTT
GCGGACCCCATCACAGGCGCCGTATGCGGCACTTCAGCACAGCACAGCAA
GACAGGCACAGGGGCACCCGACAGGTGCGTCGGTCATGGAGGTGGCGACA
GGTGCCACTCGGCAATGTCCAGCAAGACTGGCACAGGGGCACCTGACAGG
TGCGTCGCTCATGGGGGTGGCGATAGGTGCGAGATGGAGTGCTGC