mRNA_1933 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163483
Unique NamemRNA_1933
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163483 vs. uniprot
Match: A0A835Z0G3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.590e-16
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 MVNISHRRCSCGKSQPSFGVEEDERATCCALCKSDDM 111
            MVNISHRRCSCGKSQPSFGVEEDERATCCALCKSDDM
Sbjct:    1 MVNISHRRCSCGKSQPSFGVEEDERATCCALCKSDDM 37
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BLAST of jgi.p|Trimin1|163483 vs. uniprot
Match: A0A813LVJ9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LVJ9_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 3.290e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 MVNISHRRCSCGKSQPSFGVEEDERATCCALCKSDDM 111
            MV+I HR+C+CG+SQPSFG  +DER TCCA CKS DM
Sbjct:    1 MVDIRHRKCTCGRSQPSFGFRDDERPTCCAQCKSSDM 37
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BLAST of jgi.p|Trimin1|163483 vs. uniprot
Match: A0A835ZEH2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.430e-6
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   25 CSCGKSQPSFGVEEDERATCCALCKSDDM 111
            C CGK++PSFG E D+RATCCALCK+D+M
Sbjct:    1 CECGKARPSFGFEGDDRATCCALCKADNM 29
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z0G3_9STRA1.590e-16100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A813LVJ9_POLGL3.290e-970.27Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A835ZEH2_9STRA6.430e-672.41Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:545053..545712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163483|e_gw1.26.119.1
Hectar predicted targeting categoryother localisation
TranscriptId163805
TrackFilteredModels1
ProteinId163483
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163483gene_1933Tribonema minus UTEX_B_3156 geneContig_26 545053..545712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1933_1exon_1933_1Tribonema minus UTEX_B_3156 exonContig_26 545053..545712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1933CDS_1933Tribonema minus UTEX_B_3156 CDSContig_26 545053..545712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163483Trimin1|163483|e_gw1.26.119.1Tribonema minus UTEX_B_3156 polypeptideContig_26 545053..545712 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1933 ID=mRNA_1933|Name=jgi.p|Trimin1|163483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_26:545053..545712- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACATCTCCCACAGACGTTGCAGCTGTGGCAAGTCACAACCGAG
CTTCGGTGTTGAGGAAGACGAACGCGCCACCTGCTGTGCACTTTGCAAGT
CAGATGACATGGTCAACATCGTTAGCAGGAGGTGTGAGTGCGGACGAGTG
AGACCGAGCTTTGGTTTTGAGGAGGACGTACGCGCCACTTGCTGTGCGCT
ATGCAAGATGGACAGTATGGTCAACATCGTCAGCCGGCGCTGTGAGTGCG
GAAAGGTAAGACCGAGCTTTGGTTTTGAAAAGGACGAACGTCCCACTTGC
TGTGCACTCTGCAAAAATGACAACATGACAGACATTGCAAACAGACGCTG
CAACTGTGGCAAGGCAAGACCGAGCTTCGGTTTTGAGGAGGACTTGCGCG
CCACCTGCTGTGCACATTGCAAGCAGGACAACATGAGCGATATTGTCAAC
AGGCGCTGCATTTGCGGGGAGGCACGACCGAGCTTCGGTTTTAAGGAGGA
CAAACATGCCACTTGCTGTGCACTTTGCAAGGATGACAACATGGTCAATG
TCGTCAATGTTTTGTGCGGGTGTGGTCAGGTGCGACCGATCTTCGGCTTT
GAGGAGGACGAACGCCCCACGTGTTGCTCTAACTGCAAAATTGACGGCAT
GATCGACATC
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protein sequence of jgi.p|Trimin1|163483

>Trimin1|163483|e_gw1.26.119.1 ID=Trimin1|163483|e_gw1.26.119.1|Name=jgi.p|Trimin1|163483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MVNISHRRCSCGKSQPSFGVEEDERATCCALCKSDDMVNIVSRRCECGRV
RPSFGFEEDVRATCCALCKMDSMVNIVSRRCECGKVRPSFGFEKDERPTC
CALCKNDNMTDIANRRCNCGKARPSFGFEEDLRATCCAHCKQDNMSDIVN
RRCICGEARPSFGFKEDKHATCCALCKDDNMVNVVNVLCGCGQVRPIFGF
EEDERPTCCSNCKIDGMIDI
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mRNA from alignment at Contig_26:545053..545712-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1933 ID=mRNA_1933|Name=jgi.p|Trimin1|163483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_26:545053..545712- (Tribonema minus UTEX_B_3156 )
ATGGTCAACATCTCCCACAGACGTTGCAGCTGTGGCAAGTCACAACCGAG
CTTCGGTGTTGAGGAAGACGAACGCGCCACCTGCTGTGCACTTTGCAAGT
CAGATGACATGGTCAACATCGTTAGCAGGAGGTGTGAGTGCGGACGAGTG
AGACCGAGCTTTGGTTTTGAGGAGGACGTACGCGCCACTTGCTGTGCGCT
ATGCAAGATGGACAGTATGGTCAACATCGTCAGCCGGCGCTGTGAGTGCG
GAAAGGTAAGACCGAGCTTTGGTTTTGAAAAGGACGAACGTCCCACTTGC
TGTGCACTCTGCAAAAATGACAACATGACAGACATTGCAAACAGACGCTG
CAACTGTGGCAAGGCAAGACCGAGCTTCGGTTTTGAGGAGGACTTGCGCG
CCACCTGCTGTGCACATTGCAAGCAGGACAACATGAGCGATATTGTCAAC
AGGCGCTGCATTTGCGGGGAGGCACGACCGAGCTTCGGTTTTAAGGAGGA
CAAACATGCCACTTGCTGTGCACTTTGCAAGGATGACAACATGGTCAATG
TCGTCAATGTTTTGTGCGGGTGTGGTCAGGTGCGACCGATCTTCGGCTTT
GAGGAGGACGAACGCCCCACGTGTTGCTCTAACTGCAAAATTGACGGCAT
GATCGACATC
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Coding sequence (CDS) from alignment at Contig_26:545053..545712-

>mRNA_1933 ID=mRNA_1933|Name=jgi.p|Trimin1|163483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_26:545053..545712- (Tribonema minus UTEX_B_3156 )
ATGGTCAACATCTCCCACAGACGTTGCAGCTGTGGCAAGTCACAACCGAG
CTTCGGTGTTGAGGAAGACGAACGCGCCACCTGCTGTGCACTTTGCAAGT
CAGATGACATGGTCAACATCGTTAGCAGGAGGTGTGAGTGCGGACGAGTG
AGACCGAGCTTTGGTTTTGAGGAGGACGTACGCGCCACTTGCTGTGCGCT
ATGCAAGATGGACAGTATGGTCAACATCGTCAGCCGGCGCTGTGAGTGCG
GAAAGGTAAGACCGAGCTTTGGTTTTGAAAAGGACGAACGTCCCACTTGC
TGTGCACTCTGCAAAAATGACAACATGACAGACATTGCAAACAGACGCTG
CAACTGTGGCAAGGCAAGACCGAGCTTCGGTTTTGAGGAGGACTTGCGCG
CCACCTGCTGTGCACATTGCAAGCAGGACAACATGAGCGATATTGTCAAC
AGGCGCTGCATTTGCGGGGAGGCACGACCGAGCTTCGGTTTTAAGGAGGA
CAAACATGCCACTTGCTGTGCACTTTGCAAGGATGACAACATGGTCAATG
TCGTCAATGTTTTGTGCGGGTGTGGTCAGGTGCGACCGATCTTCGGCTTT
GAGGAGGACGAACGCCCCACGTGTTGCTCTAACTGCAAAATTGACGGCAT
GATCGACATC
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